Wall clock time and date at job start Tue Mar 31 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.99837 * 2 1 4 4 C 1.54319 * 109.88586 * 238.90285 * 2 1 3 5 5 H 1.09004 * 110.86966 * 336.82143 * 4 2 1 6 6 N 1.46502 * 110.72193 * 100.02269 * 4 2 1 7 7 C 1.34779 * 120.00012 * 199.97836 * 6 4 2 8 8 O 1.21280 * 119.99934 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99620 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.67311 * 295.18776 * 9 7 6 11 11 C 1.53349 * 109.67836 * 55.72699 * 9 7 6 12 12 C 1.52915 * 108.67204 * 52.19826 * 11 9 7 13 13 N 1.45754 * 110.49188 * 50.75695 * 12 11 9 14 14 C 1.33358 * 124.10192 * 340.92531 * 13 12 11 15 15 O 1.21279 * 118.24315 * 182.21814 * 14 13 12 16 16 C 1.50173 * 123.50844 * 2.21920 * 14 13 12 17 17 C 1.55158 * 102.94744 * 218.38897 * 4 2 1 18 18 C 1.54915 * 101.57801 * 35.49993 * 17 4 2 19 19 N 1.47026 * 109.88366 * 121.09239 * 2 1 3 20 20 C 1.36938 * 125.64840 * 298.39598 * 19 2 1 21 21 H 1.08001 * 119.99917 * 339.93362 * 20 19 2 22 22 C 1.38813 * 119.99768 * 159.93838 * 20 19 2 23 23 N 1.31621 * 120.00101 * 158.82264 * 22 20 19 24 24 Si 1.86801 * 120.00191 * 338.81901 * 22 20 19 25 25 H 1.48509 * 109.47014 * 85.64685 * 24 22 20 26 26 H 1.48498 * 109.47372 * 205.64705 * 24 22 20 27 27 H 1.48504 * 109.47215 * 325.65258 * 24 22 20 28 28 H 1.09003 * 109.46917 * 181.09745 * 1 2 3 29 29 H 1.08999 * 109.46789 * 301.09695 * 1 2 3 30 30 H 1.08996 * 109.47323 * 61.09938 * 1 2 3 31 31 H 0.97003 * 119.99788 * 19.98070 * 6 4 2 32 32 H 1.08997 * 109.47214 * 299.50371 * 10 9 7 33 33 H 1.08999 * 109.46682 * 59.50437 * 10 9 7 34 34 H 1.08998 * 109.47225 * 179.50198 * 10 9 7 35 35 H 1.08995 * 109.60720 * 171.96082 * 11 9 7 36 36 H 1.09000 * 109.59824 * 292.44656 * 11 9 7 37 37 H 1.09001 * 109.30261 * 171.07009 * 12 11 9 38 38 H 1.09001 * 109.30611 * 290.43949 * 12 11 9 39 39 H 0.96989 * 117.95091 * 160.91893 * 13 12 11 40 40 H 1.08996 * 109.40489 * 222.29237 * 16 14 13 41 41 H 1.08997 * 109.39918 * 102.54735 * 16 14 13 42 42 H 1.08998 * 111.00487 * 153.57109 * 17 4 2 43 43 H 1.08994 * 111.00472 * 277.38945 * 17 4 2 44 44 H 1.08995 * 110.36914 * 81.82933 * 18 17 4 45 45 H 1.09005 * 110.36640 * 204.04552 * 18 17 4 46 46 H 0.96997 * 120.00079 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2426 5 1 1.3065 -1.4459 -1.6210 6 7 2.4554 0.1960 -2.2875 7 6 2.5559 -0.2161 -3.5668 8 8 2.3142 -1.3696 -3.8531 9 6 2.9685 0.7565 -4.6414 10 6 1.9033 1.8450 -4.7876 11 6 4.3128 1.3949 -4.2716 12 6 5.3123 0.2821 -3.9537 13 7 5.3298 -0.7087 -5.0226 14 6 4.3552 -0.8569 -5.9207 15 8 4.4608 -1.7439 -6.7410 16 6 3.1341 0.0158 -5.9707 17 6 3.2877 -1.5142 -0.6923 18 6 2.8145 -1.8794 0.7369 19 7 2.0300 -0.7140 1.1840 20 6 1.8038 -0.3563 2.4863 21 1 1.5083 0.6547 2.7251 22 6 1.9544 -1.2931 3.4995 23 7 2.1524 -0.8961 4.7388 24 14 1.8761 -3.1171 3.1044 25 1 3.2187 -3.5899 2.6807 26 1 1.4455 -3.8671 4.3115 27 1 0.9022 -3.3445 2.0066 28 1 -0.3633 -1.0275 0.0197 29 1 -0.3633 0.5308 0.8800 30 1 -0.3634 0.4966 -0.8996 31 1 2.6484 1.1187 -2.0586 32 1 0.9539 1.3890 -5.0681 33 1 1.7881 2.3702 -3.8394 34 1 2.2091 2.5514 -5.5593 35 1 4.6794 1.9872 -5.1099 36 1 4.1861 2.0334 -3.3973 37 1 6.3079 0.7123 -3.8449 38 1 5.0281 -0.2013 -3.0190 39 1 6.0984 -1.2970 -5.0846 40 1 2.2548 -0.6019 -6.1530 41 1 3.2398 0.7403 -6.7782 42 1 3.4852 -2.4110 -1.2795 43 1 4.1656 -0.8690 -0.6610 44 1 2.1887 -2.7714 0.7130 45 1 3.6717 -2.0356 1.3919 46 1 2.2573 -1.5507 5.4468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088657333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:33 Heat of formation + Delta-G solvation = -52.840936 kcal Electronic energy + Delta-G solvation = -27418.254110 eV Core-core repulsion = 23729.105875 eV Total energy + Delta-G solvation = -3689.148235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33953 -39.39929 -38.04014 -36.56885 -34.41979 -34.19487 -32.13466 -30.77006 -30.00301 -29.36730 -28.25778 -25.39131 -24.12283 -23.92971 -23.16626 -21.23729 -20.47786 -20.05451 -18.82135 -17.64835 -17.00830 -16.56104 -16.40296 -16.07391 -15.75527 -15.13136 -14.94537 -14.77139 -14.20670 -14.02627 -13.70042 -13.58267 -13.31000 -13.02102 -12.97220 -12.80225 -12.59526 -12.30768 -12.19227 -11.99242 -11.85507 -11.66655 -11.57603 -11.25343 -11.16608 -10.93923 -10.82679 -10.50340 -10.18117 -10.03744 -9.91628 -9.72855 -9.48394 -9.25967 -8.90904 -8.71779 -7.12184 -5.99724 -3.32436 2.55782 2.57506 3.04703 3.13427 3.32615 3.46906 3.48633 4.06582 4.17212 4.20456 4.40936 4.50675 4.64093 4.88613 4.90723 4.97900 5.08668 5.13935 5.18204 5.21699 5.27653 5.29275 5.34959 5.40787 5.54464 5.57979 5.65721 5.73314 5.79748 5.88633 5.98418 6.11763 6.24696 6.33805 6.40047 6.57142 6.59172 6.67614 6.73986 6.91897 7.16181 7.49718 7.65580 8.09297 8.19272 8.26334 8.77010 9.63219 10.10652 11.16202 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.003870 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.066190 B = 7233.561423 C = 7621.201404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.046 0.954 4 C 0.135 3.865 5 H 0.095 0.905 6 N -0.713 5.713 7 C 0.520 3.480 8 O -0.531 6.531 9 C -0.086 4.086 10 C -0.140 4.140 11 C -0.125 4.125 12 C 0.102 3.898 13 N -0.719 5.719 14 C 0.531 3.469 15 O -0.558 6.558 16 C -0.113 4.113 17 C -0.139 4.139 18 C 0.111 3.889 19 N -0.600 5.600 20 C -0.240 4.240 21 H 0.092 0.908 22 C 0.025 3.975 23 N -0.908 5.908 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.302 1.302 27 H -0.275 1.275 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.028 0.972 45 H 0.062 0.938 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 8.838 -19.287 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.063 0.937 4 C 0.030 3.970 5 H 0.113 0.887 6 N -0.363 5.363 7 C 0.305 3.695 8 O -0.407 6.407 9 C -0.089 4.089 10 C -0.197 4.197 11 C -0.163 4.163 12 C -0.023 4.023 13 N -0.372 5.372 14 C 0.318 3.682 15 O -0.437 6.437 16 C -0.153 4.153 17 C -0.178 4.178 18 C -0.015 4.015 19 N -0.326 5.326 20 C -0.367 4.367 21 H 0.110 0.890 22 C -0.174 4.174 23 N -0.552 5.552 24 Si 0.712 3.288 25 H -0.213 1.213 26 H -0.230 1.230 27 H -0.201 1.201 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.234 0.766 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.876 7.680 -19.607 21.411 hybrid contribution 0.285 -0.870 0.276 0.956 sum 4.160 6.810 -19.332 20.914 Atomic orbital electron populations 1.22205 0.97177 1.01628 1.00496 1.21071 0.92871 0.95155 0.85972 0.93662 1.22133 0.96985 0.91064 0.86797 0.88748 1.46017 1.69498 1.13948 1.06887 1.20267 0.77267 0.88659 0.83292 1.90751 1.49116 1.18887 1.81945 1.20987 0.97311 0.96149 0.94498 1.21837 0.97731 0.96914 1.03230 1.22004 0.92880 0.97567 1.03890 1.21460 1.00560 0.89650 0.90582 1.45376 1.22944 1.37877 1.30968 1.19951 0.83862 0.84339 0.80003 1.90745 1.79073 1.33863 1.40011 1.21575 0.97822 0.99186 0.96680 1.23113 0.97518 1.00090 0.97112 1.21964 0.95250 0.91234 0.93019 1.44801 1.57425 1.28957 1.01453 1.18567 1.43275 0.96160 0.78672 0.89009 1.25010 0.99938 0.97623 0.94798 1.69814 1.51268 1.33900 1.00208 0.87005 0.78215 0.87277 0.76302 1.21266 1.23015 1.20075 0.93048 0.91948 0.94075 0.76647 0.91417 0.91283 0.90995 0.89524 0.88880 0.89896 0.91140 0.76558 0.87067 0.87638 0.91360 0.91063 0.95450 0.92009 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.14 37.16 0.34 -2.33 16 2 C 0.16 2.77 3.48 -66.96 -0.23 2.54 16 3 H 0.05 0.76 7.69 -51.93 -0.40 0.36 16 4 C 0.13 2.10 2.76 -66.10 -0.18 1.92 16 5 H 0.09 1.64 7.41 -51.93 -0.38 1.25 16 6 N -0.71 -8.22 4.99 -52.03 -0.26 -8.48 16 7 C 0.52 6.29 4.82 -10.99 -0.05 6.24 16 8 O -0.53 -8.90 15.04 5.56 0.08 -8.81 16 9 C -0.09 -0.70 0.65 -155.44 -0.10 -0.80 16 10 C -0.14 -0.82 8.44 37.16 0.31 -0.50 16 11 C -0.13 -0.73 4.74 -26.59 -0.13 -0.85 16 12 C 0.10 0.76 6.60 -4.49 -0.03 0.73 16 13 N -0.72 -7.27 5.44 -61.39 -0.33 -7.61 16 14 C 0.53 6.81 6.92 -11.87 -0.08 6.73 16 15 O -0.56 -9.57 17.78 5.56 0.10 -9.48 16 16 C -0.11 -1.11 4.47 -28.10 -0.13 -1.24 16 17 C -0.14 -2.32 6.77 -24.58 -0.17 -2.48 16 18 C 0.11 2.34 4.71 -2.53 -0.01 2.33 16 19 N -0.60 -13.55 2.92 -162.57 -0.48 -14.02 16 20 C -0.24 -6.44 10.19 -15.06 -0.15 -6.60 16 21 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 22 C 0.03 0.71 5.44 -17.43 -0.09 0.62 16 23 N -0.91 -27.32 13.97 55.49 0.78 -26.54 16 24 Si 0.88 22.35 24.28 -169.99 -4.13 18.22 16 25 H -0.29 -7.02 6.59 56.52 0.37 -6.64 16 26 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 27 H -0.27 -6.93 6.56 56.52 0.37 -6.55 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.40 3.54 7.43 -40.82 -0.30 3.24 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.09 0.38 7.61 -51.93 -0.40 -0.01 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.65 7.32 -51.93 -0.38 0.27 16 39 H 0.40 3.78 8.80 -40.82 -0.36 3.42 16 40 H 0.11 1.29 7.66 -51.93 -0.40 0.89 16 41 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.03 0.62 5.46 -51.93 -0.28 0.34 16 45 H 0.06 1.39 6.76 -51.93 -0.35 1.04 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -35.46 355.49 -7.09 -42.55 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.50 Total: 2.51 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.71 Total: 6.30 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.29 Total: -56.65 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.18 Total: -18.29 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.13 Total: 18.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.46 -7.09 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088657333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.289 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds