Wall clock time and date at job start Tue Mar 31 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.86881 * 2 1 4 4 C 1.54315 * 109.88513 * 238.98239 * 2 1 3 5 5 H 1.09003 * 110.71967 * 336.93131 * 4 2 1 6 6 N 1.46499 * 110.72057 * 100.02790 * 4 2 1 7 7 C 1.34784 * 119.99971 * 204.99963 * 6 4 2 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 4 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 4 10 10 N 1.46506 * 109.46874 * 180.02562 * 9 7 6 11 11 C 1.45755 * 117.94143 * 269.73780 * 10 9 7 12 12 C 1.53106 * 110.38306 * 160.74491 * 11 10 9 13 13 C 1.53342 * 108.52730 * 51.11426 * 12 11 10 14 14 C 1.53069 * 108.42704 * 292.30919 * 13 12 11 15 15 C 1.33353 * 117.94916 * 89.99868 * 10 9 7 16 16 O 1.21280 * 118.24301 * 2.25172 * 15 10 9 17 17 C 1.55157 * 102.94553 * 218.39399 * 4 2 1 18 18 C 1.54911 * 101.57886 * 35.50032 * 17 4 2 19 19 N 1.47026 * 109.87855 * 121.17281 * 2 1 3 20 20 C 1.36932 * 125.64949 * 298.32860 * 19 2 1 21 21 H 1.08003 * 120.00360 * 359.97438 * 20 19 2 22 22 C 1.38813 * 120.00218 * 180.02562 * 20 19 2 23 23 N 1.31626 * 119.99945 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00376 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47089 * 59.99888 * 24 22 20 26 26 H 1.48498 * 109.47081 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46807 * 299.99800 * 24 22 20 28 28 H 1.08999 * 109.46999 * 181.01112 * 1 2 3 29 29 H 1.08996 * 109.47295 * 301.01794 * 1 2 3 30 30 H 1.09002 * 109.46892 * 61.01624 * 1 2 3 31 31 H 0.96999 * 119.99984 * 24.99811 * 6 4 2 32 32 H 1.09005 * 109.47403 * 300.00056 * 9 7 6 33 33 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 34 34 H 1.08995 * 109.30367 * 281.23176 * 11 10 9 35 35 H 1.08998 * 109.30193 * 40.61613 * 11 10 9 36 36 H 1.09000 * 109.80591 * 291.32311 * 12 11 10 37 37 H 1.08996 * 109.68229 * 170.82602 * 12 11 10 38 38 H 1.09002 * 109.67528 * 172.57961 * 13 12 11 39 39 H 1.08995 * 109.70618 * 52.06486 * 13 12 11 40 40 H 1.09000 * 109.40035 * 288.77609 * 14 13 12 41 41 H 1.08998 * 109.33585 * 168.98805 * 14 13 12 42 42 H 1.08990 * 111.00809 * 153.57575 * 17 4 2 43 43 H 1.09002 * 110.99865 * 277.42921 * 17 4 2 44 44 H 1.09002 * 110.36368 * 204.15416 * 18 17 4 45 45 H 1.08993 * 110.45960 * 81.88229 * 18 17 4 46 46 H 0.96995 * 120.00459 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2436 5 1 1.3040 -1.4414 -1.6220 6 7 2.4556 0.1992 -2.2871 7 6 2.4584 -0.1834 -3.5795 8 8 2.1339 -1.3132 -3.8780 9 6 2.8700 0.7909 -4.6528 10 7 2.7883 0.1385 -5.9620 11 6 3.9743 -0.5483 -6.4581 12 6 3.5935 -1.5438 -7.5573 13 6 2.7370 -0.8147 -8.5995 14 6 1.3983 -0.4476 -7.9543 15 6 1.6351 0.2147 -6.6275 16 8 0.7295 0.8535 -6.1350 17 6 3.2876 -1.5133 -0.6944 18 6 2.8144 -1.8804 0.7343 19 7 2.0300 -0.7157 1.1830 20 6 1.8048 -0.3591 2.4858 21 1 1.2146 0.5168 2.7117 22 6 2.3359 -1.1227 3.5162 23 7 3.0556 -2.1899 3.2410 24 14 2.0293 -0.6358 5.2934 25 1 0.5689 -0.6370 5.5620 26 1 2.6988 -1.6072 6.1952 27 1 2.5762 0.7234 5.5355 28 1 -0.3633 -1.0275 0.0181 29 1 -0.3634 0.5295 0.8807 30 1 -0.3633 0.4980 -0.8990 31 1 2.7189 1.1016 -2.0479 32 1 2.2041 1.6538 -4.6351 33 1 3.8940 1.1185 -4.4730 34 1 4.6745 0.1850 -6.8581 35 1 4.4495 -1.0852 -5.6371 36 1 3.0242 -2.3682 -7.1279 37 1 4.4958 -1.9302 -8.0312 38 1 2.5650 -1.4679 -9.4550 39 1 3.2475 0.0911 -8.9262 40 1 0.8072 -1.3515 -7.8073 41 1 0.8577 0.2361 -8.6088 42 1 3.4852 -2.4092 -1.2827 43 1 4.1654 -0.8679 -0.6614 44 1 3.6715 -2.0358 1.3896 45 1 2.1891 -2.7728 0.7109 46 1 3.4264 -2.7237 3.9609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088697716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:50 Heat of formation + Delta-G solvation = -45.777199 kcal Electronic energy + Delta-G solvation = -26378.781852 eV Core-core repulsion = 22689.939924 eV Total energy + Delta-G solvation = -3688.841928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86446 -39.30657 -37.49285 -36.62010 -34.24696 -33.97313 -32.02738 -30.37504 -29.95597 -29.02767 -27.72546 -24.88374 -24.33668 -23.96363 -22.59487 -20.68987 -20.15086 -19.66697 -18.80079 -17.20185 -17.00169 -16.71177 -16.68876 -15.80868 -15.37869 -14.78061 -14.69345 -14.43492 -14.29546 -13.98341 -13.78907 -13.57387 -13.38901 -13.21200 -12.77808 -12.33986 -12.12454 -12.02158 -11.79930 -11.57539 -11.53500 -11.29961 -11.28140 -11.13745 -10.84205 -10.81852 -10.54977 -10.41716 -10.12452 -9.91849 -9.82026 -9.73262 -9.56685 -8.82200 -8.67237 -8.58290 -6.87384 -5.65330 -3.08121 2.44023 2.72639 2.80259 3.40015 3.43924 3.45489 3.51765 4.29855 4.40673 4.43632 4.48453 4.50000 4.85265 4.93729 5.04372 5.14274 5.18902 5.31206 5.32864 5.40245 5.43056 5.50484 5.54633 5.56848 5.61190 5.64269 5.84234 5.87647 6.07740 6.14483 6.26809 6.34686 6.37643 6.54889 6.63258 6.71371 6.90028 7.13717 7.24985 7.51591 7.62337 7.73744 7.84796 8.01581 8.34353 8.43403 9.20791 9.81673 10.45784 11.38019 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.035285 B = 0.002797 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.340959 B =10008.939651 C =10424.688318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.092 0.908 6 N -0.714 5.714 7 C 0.498 3.502 8 O -0.536 6.536 9 C 0.086 3.914 10 N -0.585 5.585 11 C 0.116 3.884 12 C -0.136 4.136 13 C -0.123 4.123 14 C -0.132 4.132 15 C 0.522 3.478 16 O -0.553 6.553 17 C -0.152 4.152 18 C 0.153 3.847 19 N -0.595 5.595 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.922 5.922 24 Si 0.915 3.085 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.398 0.602 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.014 0.986 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 4.727 -22.956 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.031 3.969 5 H 0.110 0.890 6 N -0.365 5.365 7 C 0.282 3.718 8 O -0.413 6.413 9 C -0.041 4.041 10 N -0.317 5.317 11 C -0.007 4.007 12 C -0.174 4.174 13 C -0.161 4.161 14 C -0.172 4.172 15 C 0.311 3.689 16 O -0.431 6.431 17 C -0.191 4.191 18 C 0.028 3.972 19 N -0.320 5.320 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.232 0.768 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.032 0.968 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.518 4.136 -22.719 23.359 hybrid contribution -0.066 0.533 1.157 1.276 sum 3.452 4.669 -21.562 22.330 Atomic orbital electron populations 1.22238 0.97889 1.01407 0.99952 1.20997 0.92628 0.94765 0.86911 0.94644 1.22139 0.97562 0.90808 0.86376 0.89018 1.46036 1.68196 1.16248 1.06053 1.20975 0.77971 0.89126 0.83704 1.90678 1.47752 1.20679 1.82185 1.21376 1.04127 0.96226 0.82351 1.46860 1.12911 1.54243 1.17648 1.21460 0.86465 0.94978 0.97786 1.21903 1.01246 0.98390 0.95865 1.21666 0.94982 1.01075 0.98346 1.21636 0.99401 1.02548 0.93601 1.20140 0.81386 0.80247 0.87101 1.90723 1.41193 1.42191 1.69022 1.23381 0.96760 0.99210 0.99782 1.21941 0.97361 0.88400 0.89505 1.44483 1.59272 1.28209 1.00074 1.18985 1.27147 1.08157 0.80533 0.90508 1.24787 1.00388 0.97386 0.98048 1.69783 1.39144 1.17823 1.30300 0.86153 0.77661 0.77395 0.84283 1.21232 1.21596 1.21183 0.93001 0.92736 0.94268 0.76803 0.86595 0.87562 0.91519 0.90395 0.90395 0.89737 0.90521 0.91144 0.88104 0.88288 0.92183 0.92016 0.87345 0.96829 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.13 37.16 0.34 -2.70 16 2 C 0.16 3.18 3.48 -66.95 -0.23 2.95 16 3 H 0.04 0.70 7.71 -51.93 -0.40 0.30 16 4 C 0.14 2.53 2.84 -66.10 -0.19 2.35 16 5 H 0.09 1.90 7.26 -51.93 -0.38 1.52 16 6 N -0.71 -10.62 5.18 -52.04 -0.27 -10.89 16 7 C 0.50 7.52 7.88 -10.98 -0.09 7.43 16 8 O -0.54 -10.18 16.07 5.56 0.09 -10.09 16 9 C 0.09 0.95 5.70 -5.19 -0.03 0.92 16 10 N -0.58 -6.47 2.30 -176.22 -0.41 -6.88 16 11 C 0.12 0.91 6.33 -4.39 -0.03 0.88 16 12 C -0.14 -0.90 6.03 -26.50 -0.16 -1.06 16 13 C -0.12 -0.73 6.03 -26.52 -0.16 -0.89 16 14 C -0.13 -1.15 6.03 -28.10 -0.17 -1.32 16 15 C 0.52 6.66 7.45 -11.87 -0.09 6.57 16 16 O -0.55 -9.31 16.18 5.56 0.09 -9.22 16 17 C -0.15 -3.00 6.77 -24.58 -0.17 -3.17 16 18 C 0.15 3.75 5.89 -2.53 -0.01 3.73 16 19 N -0.60 -14.95 3.13 -162.58 -0.51 -15.46 16 20 C -0.22 -6.01 9.89 -15.06 -0.15 -6.16 16 21 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 24 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.40 4.81 8.37 -40.82 -0.34 4.47 16 32 H 0.12 1.31 7.13 -51.93 -0.37 0.93 16 33 H 0.11 0.79 8.01 -51.93 -0.42 0.38 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -34.93 367.06 -8.83 -43.77 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.67 Total: 3.31 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -1.23 Total: 9.15 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.62 Total: -59.39 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.93 -8.83 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088697716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.012 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds