Wall clock time and date at job start Tue Mar 31 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.86881 * 2 1 4 4 C 1.54315 * 109.88513 * 238.98239 * 2 1 3 5 5 H 1.09003 * 110.71967 * 336.93131 * 4 2 1 6 6 N 1.46499 * 110.72057 * 100.02790 * 4 2 1 7 7 C 1.34784 * 119.99971 * 204.99963 * 6 4 2 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 4 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 4 10 10 N 1.46506 * 109.46874 * 180.02562 * 9 7 6 11 11 C 1.45755 * 117.94143 * 269.73780 * 10 9 7 12 12 C 1.53106 * 110.38306 * 160.74491 * 11 10 9 13 13 C 1.53342 * 108.52730 * 51.11426 * 12 11 10 14 14 C 1.53069 * 108.42704 * 292.30919 * 13 12 11 15 15 C 1.33353 * 117.94916 * 89.99868 * 10 9 7 16 16 O 1.21280 * 118.24301 * 2.25172 * 15 10 9 17 17 C 1.55157 * 102.94553 * 218.39399 * 4 2 1 18 18 C 1.54911 * 101.57886 * 35.50032 * 17 4 2 19 19 N 1.47026 * 109.87855 * 121.17281 * 2 1 3 20 20 C 1.36932 * 125.64949 * 298.32860 * 19 2 1 21 21 H 1.08003 * 120.00360 * 359.97438 * 20 19 2 22 22 C 1.38813 * 120.00218 * 180.02562 * 20 19 2 23 23 N 1.31626 * 119.99945 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00376 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47089 * 59.99888 * 24 22 20 26 26 H 1.48498 * 109.47081 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46807 * 299.99800 * 24 22 20 28 28 H 1.08999 * 109.46999 * 181.01112 * 1 2 3 29 29 H 1.08996 * 109.47295 * 301.01794 * 1 2 3 30 30 H 1.09002 * 109.46892 * 61.01624 * 1 2 3 31 31 H 0.96999 * 119.99984 * 24.99811 * 6 4 2 32 32 H 1.09005 * 109.47403 * 300.00056 * 9 7 6 33 33 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 34 34 H 1.08995 * 109.30367 * 281.23176 * 11 10 9 35 35 H 1.08998 * 109.30193 * 40.61613 * 11 10 9 36 36 H 1.09000 * 109.80591 * 291.32311 * 12 11 10 37 37 H 1.08996 * 109.68229 * 170.82602 * 12 11 10 38 38 H 1.09002 * 109.67528 * 172.57961 * 13 12 11 39 39 H 1.08995 * 109.70618 * 52.06486 * 13 12 11 40 40 H 1.09000 * 109.40035 * 288.77609 * 14 13 12 41 41 H 1.08998 * 109.33585 * 168.98805 * 14 13 12 42 42 H 1.08990 * 111.00809 * 153.57575 * 17 4 2 43 43 H 1.09002 * 110.99865 * 277.42921 * 17 4 2 44 44 H 1.09002 * 110.36368 * 204.15416 * 18 17 4 45 45 H 1.08993 * 110.45960 * 81.88229 * 18 17 4 46 46 H 0.96995 * 120.00459 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2436 5 1 1.3040 -1.4414 -1.6220 6 7 2.4556 0.1992 -2.2871 7 6 2.4584 -0.1834 -3.5795 8 8 2.1339 -1.3132 -3.8780 9 6 2.8700 0.7909 -4.6528 10 7 2.7883 0.1385 -5.9620 11 6 3.9743 -0.5483 -6.4581 12 6 3.5935 -1.5438 -7.5573 13 6 2.7370 -0.8147 -8.5995 14 6 1.3983 -0.4476 -7.9543 15 6 1.6351 0.2147 -6.6275 16 8 0.7295 0.8535 -6.1350 17 6 3.2876 -1.5133 -0.6944 18 6 2.8144 -1.8804 0.7343 19 7 2.0300 -0.7157 1.1830 20 6 1.8048 -0.3591 2.4858 21 1 1.2146 0.5168 2.7117 22 6 2.3359 -1.1227 3.5162 23 7 3.0556 -2.1899 3.2410 24 14 2.0293 -0.6358 5.2934 25 1 0.5689 -0.6370 5.5620 26 1 2.6988 -1.6072 6.1952 27 1 2.5762 0.7234 5.5355 28 1 -0.3633 -1.0275 0.0181 29 1 -0.3634 0.5295 0.8807 30 1 -0.3633 0.4980 -0.8990 31 1 2.7189 1.1016 -2.0479 32 1 2.2041 1.6538 -4.6351 33 1 3.8940 1.1185 -4.4730 34 1 4.6745 0.1850 -6.8581 35 1 4.4495 -1.0852 -5.6371 36 1 3.0242 -2.3682 -7.1279 37 1 4.4958 -1.9302 -8.0312 38 1 2.5650 -1.4679 -9.4550 39 1 3.2475 0.0911 -8.9262 40 1 0.8072 -1.3515 -7.8073 41 1 0.8577 0.2361 -8.6088 42 1 3.4852 -2.4092 -1.2827 43 1 4.1654 -0.8679 -0.6614 44 1 3.6715 -2.0358 1.3896 45 1 2.1891 -2.7728 0.7109 46 1 3.4264 -2.7237 3.9609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088697716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:50 Heat of formation + Delta-G solvation = -69.622598 kcal Electronic energy + Delta-G solvation = -26379.815866 eV Core-core repulsion = 22689.939924 eV Total energy + Delta-G solvation = -3689.875942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81210 -40.62324 -39.09581 -37.46112 -35.61047 -34.99355 -33.84421 -32.09696 -30.82784 -30.53207 -28.92184 -26.33488 -25.82275 -25.23121 -23.36867 -22.22574 -21.61774 -21.30219 -19.55706 -18.74859 -18.35749 -17.90803 -17.54735 -17.20182 -16.59477 -16.30273 -15.98205 -15.72078 -15.41155 -15.09877 -15.08261 -14.59511 -14.34123 -14.28803 -14.12186 -14.01512 -13.78600 -13.27828 -13.09535 -12.95476 -12.74342 -12.67774 -12.62852 -12.26387 -12.21493 -12.12483 -12.03499 -11.84286 -11.80973 -11.59786 -11.46423 -11.12732 -10.73726 -10.72887 -10.02753 -9.75695 -8.91555 -7.75522 -5.20862 1.46234 1.48470 1.50794 1.56947 1.61384 1.89993 2.32660 2.53008 3.34596 3.53752 3.60758 3.80746 3.83700 3.87579 3.93214 3.93830 3.95204 4.18142 4.23078 4.39088 4.46983 4.53816 4.57611 4.59560 4.64121 4.66860 4.76285 4.87114 4.90959 4.95386 5.02133 5.06183 5.09914 5.15383 5.30332 5.31584 5.40050 5.48688 5.58281 5.60514 5.78727 6.29533 6.41278 6.55169 7.09904 7.10427 7.24794 7.77719 8.41453 9.26234 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.035285 B = 0.002797 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.340959 B =10008.939651 C =10424.688318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.151 3.849 3 H 0.055 0.945 4 C 0.153 3.847 5 H 0.070 0.930 6 N -0.703 5.703 7 C 0.496 3.504 8 O -0.579 6.579 9 C 0.090 3.910 10 N -0.585 5.585 11 C 0.108 3.892 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.132 4.132 15 C 0.510 3.490 16 O -0.605 6.605 17 C -0.134 4.134 18 C 0.157 3.843 19 N -0.613 5.613 20 C -0.229 4.229 21 H 0.084 0.916 22 C -0.068 4.068 23 N -0.951 5.951 24 Si 0.979 3.021 25 H -0.282 1.282 26 H -0.296 1.296 27 H -0.274 1.274 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.415 0.585 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.080 0.920 45 H -0.019 1.019 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 6.541 -24.852 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.073 0.927 4 C 0.047 3.953 5 H 0.088 0.912 6 N -0.356 5.356 7 C 0.282 3.718 8 O -0.458 6.458 9 C -0.037 4.037 10 N -0.315 5.315 11 C -0.014 4.014 12 C -0.173 4.173 13 C -0.151 4.151 14 C -0.171 4.171 15 C 0.300 3.700 16 O -0.487 6.487 17 C -0.173 4.173 18 C 0.032 3.968 19 N -0.338 5.338 20 C -0.358 4.358 21 H 0.102 0.898 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.808 3.192 25 H -0.208 1.208 26 H -0.222 1.222 27 H -0.200 1.200 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.253 0.747 32 H 0.135 0.865 33 H 0.169 0.831 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.098 0.902 45 H -0.001 1.001 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.711 5.991 -24.653 25.804 hybrid contribution -0.443 -0.050 1.711 1.768 sum 4.269 5.941 -22.942 24.081 Atomic orbital electron populations 1.22129 0.97095 1.00464 1.00953 1.21190 0.93165 0.95258 0.85985 0.92746 1.21655 0.96228 0.90864 0.86589 0.91206 1.45836 1.67975 1.16381 1.05374 1.21774 0.76662 0.89207 0.84108 1.90667 1.49534 1.22849 1.82775 1.21492 1.06505 0.94674 0.81022 1.47086 1.13427 1.53747 1.17247 1.21764 0.85643 0.95937 0.98031 1.21928 1.02236 0.97412 0.95739 1.21659 0.93063 1.02028 0.98351 1.21696 1.01368 1.02085 0.91991 1.20910 0.81110 0.79663 0.88292 1.90686 1.42882 1.44586 1.70552 1.23165 0.97608 0.99868 0.96692 1.21678 0.95694 0.87630 0.91817 1.44719 1.59741 1.28571 1.00809 1.19358 1.26543 1.08152 0.81754 0.89805 1.25616 1.00769 0.97675 1.01967 1.70030 1.40299 1.18879 1.30879 0.85135 0.77443 0.77212 0.79436 1.20793 1.22222 1.19971 0.94868 0.93204 0.91748 0.74748 0.86546 0.83123 0.88203 0.91178 0.92811 0.87014 0.88520 0.89634 0.88645 0.87356 0.91731 0.90545 0.90232 1.00102 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 9.13 71.98 0.66 -5.00 16 2 C 0.15 6.07 3.48 45.34 0.16 6.23 16 3 H 0.05 2.03 7.71 -2.39 -0.02 2.01 16 4 C 0.15 5.61 2.84 46.18 0.13 5.75 16 5 H 0.07 2.92 7.26 -2.39 -0.02 2.90 16 6 N -0.70 -19.63 5.18 -436.93 -2.26 -21.89 16 7 C 0.50 14.28 7.88 87.65 0.69 14.97 16 8 O -0.58 -21.87 16.07 -3.01 -0.05 -21.92 16 9 C 0.09 1.77 5.70 85.63 0.49 2.26 16 10 N -0.58 -11.82 2.30 -830.62 -1.91 -13.73 16 11 C 0.11 1.39 6.33 86.56 0.55 1.93 16 12 C -0.14 -1.43 6.03 30.74 0.19 -1.25 16 13 C -0.11 -1.00 6.03 30.73 0.19 -0.82 16 14 C -0.13 -2.12 6.03 29.71 0.18 -1.94 16 15 C 0.51 12.55 7.45 87.71 0.65 13.21 16 16 O -0.60 -20.39 16.18 -3.03 -0.05 -20.44 16 17 C -0.13 -5.28 6.77 31.99 0.22 -5.06 16 18 C 0.16 7.95 5.89 86.86 0.51 8.46 16 19 N -0.61 -31.10 3.13 -668.27 -2.09 -33.19 16 20 C -0.23 -12.59 9.89 84.03 0.83 -11.76 16 21 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 22 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 23 N -0.95 -56.74 10.09 21.65 0.22 -56.52 16 24 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.42 8.83 8.37 -92.71 -0.78 8.06 16 32 H 0.12 2.38 7.13 -2.38 -0.02 2.37 16 33 H 0.15 1.62 8.01 -2.39 -0.02 1.60 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 36 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 0.55 8.12 -2.39 -0.02 0.53 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.08 4.51 5.87 -2.39 -0.01 4.50 16 45 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -79.11 367.06 1.98 -77.13 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.19 Total: 19.43 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 5.90 Total: 23.62 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -6.05 Total: -125.33 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.10 Total: -42.36 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -79.11 1.98 -77.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088697716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.509 kcal (2) G-P(sol) polarization free energy of solvation -79.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds