Wall clock time and date at job start Tue Mar 31 2020 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.58705 * 2 1 4 4 C 1.53193 * 109.58763 * 239.71384 * 2 1 3 5 5 C 1.53036 * 109.34243 * 185.56365 * 4 2 1 6 6 C 1.53110 * 109.50412 * 61.34603 * 5 4 2 7 7 H 1.08992 * 109.48739 * 178.70411 * 6 5 4 8 8 N 1.46504 * 109.50925 * 58.63046 * 6 5 4 9 9 C 1.34776 * 119.99346 * 155.12623 * 8 6 5 10 10 O 1.21353 * 120.00482 * 0.02562 * 9 8 6 11 11 C 1.49452 * 119.99985 * 179.97438 * 9 8 6 12 12 O 1.21346 * 119.99959 * 0.02562 * 11 9 8 13 13 N 1.34770 * 120.00120 * 180.02562 * 11 9 8 14 14 C 1.46500 * 120.00002 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47413 * 179.97438 * 14 13 11 16 16 C 1.53000 * 117.50134 * 243.62237 * 15 14 13 17 17 C 1.52993 * 59.99930 * 252.50844 * 16 15 14 18 18 C 1.53191 * 109.32916 * 298.66061 * 6 5 4 19 19 N 1.46928 * 109.58427 * 120.42755 * 2 1 3 20 20 C 1.36938 * 120.63317 * 353.41554 * 19 2 1 21 21 H 1.08000 * 120.00005 * 29.54168 * 20 19 2 22 22 C 1.38813 * 120.00008 * 209.54646 * 20 19 2 23 23 N 1.31614 * 120.00094 * 16.10568 * 22 20 19 24 24 Si 1.86797 * 119.99917 * 196.11360 * 22 20 19 25 25 H 1.48503 * 109.47026 * 92.95396 * 24 22 20 26 26 H 1.48495 * 109.47320 * 212.95726 * 24 22 20 27 27 H 1.48501 * 109.47026 * 332.95755 * 24 22 20 28 28 H 1.08994 * 109.46789 * 180.28713 * 1 2 3 29 29 H 1.09004 * 109.46527 * 300.28509 * 1 2 3 30 30 H 1.08999 * 109.46827 * 60.28303 * 1 2 3 31 31 H 1.09000 * 109.49757 * 305.53330 * 4 2 1 32 32 H 1.09003 * 109.49185 * 65.59498 * 4 2 1 33 33 H 1.08995 * 109.46042 * 181.40489 * 5 4 2 34 34 H 1.09005 * 109.45895 * 301.35972 * 5 4 2 35 35 H 0.97000 * 120.00597 * 335.12912 * 8 6 5 36 36 H 0.96998 * 120.00478 * 0.02562 * 13 11 9 37 37 H 1.09004 * 109.47269 * 300.00006 * 14 13 11 38 38 H 1.09004 * 109.47148 * 60.00146 * 14 13 11 39 39 H 1.09000 * 115.54932 * 29.32718 * 15 14 13 40 40 H 1.09004 * 117.49298 * 0.02562 * 16 15 14 41 41 H 1.08999 * 117.50188 * 145.01160 * 16 15 14 42 42 H 1.08997 * 117.49932 * 252.50650 * 17 16 15 43 43 H 1.09006 * 117.51770 * 107.48214 * 17 16 15 44 44 H 1.08995 * 109.58817 * 294.84431 * 18 6 5 45 45 H 1.09003 * 109.58283 * 174.42189 * 18 6 5 46 46 H 0.96997 * 120.00299 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5676 -0.8466 -1.1720 6 6 3.9570 -1.6659 0.0615 7 1 5.0412 -1.7698 0.1015 8 7 3.3410 -2.9928 -0.0181 9 6 3.8964 -4.0335 0.6336 10 8 4.9064 -3.8715 1.2867 11 6 3.2679 -5.3871 0.5530 12 8 2.2578 -5.5491 -0.0996 13 7 3.8230 -6.4277 1.2052 14 6 3.2072 -7.7546 1.1257 15 6 4.0292 -8.7486 1.9486 16 6 4.6992 -9.9023 1.1995 17 6 3.4837 -10.1711 2.0890 18 6 3.4651 -0.9486 1.3225 19 7 2.0226 -0.7011 1.1936 20 6 1.1536 -1.1162 2.1672 21 1 0.1384 -1.3787 1.9087 22 6 1.5777 -1.1995 3.4864 23 7 2.6845 -0.5941 3.8613 24 14 0.5774 -2.1709 4.7294 25 1 1.0936 -3.5615 4.8018 26 1 0.6903 -1.5308 6.0645 27 1 -0.8469 -2.1929 4.3098 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3632 0.5183 0.8875 30 1 -0.3633 0.5094 -0.8925 31 1 1.6030 -1.7237 -1.2935 32 1 1.7656 -0.1644 -2.1370 33 1 3.9374 -1.3421 -2.0696 34 1 4.0063 0.1487 -1.1000 35 1 2.5336 -3.1223 -0.5398 36 1 4.6302 -6.2982 1.7271 37 1 2.1919 -7.7082 1.5197 38 1 3.1789 -8.0804 0.0858 39 1 4.5601 -8.3267 2.8020 40 1 4.5545 -9.9529 0.1203 41 1 5.6711 -10.2394 1.5599 42 1 3.6559 -10.6851 3.0346 43 1 2.5389 -10.3988 1.5954 44 1 3.9904 0.0002 1.4317 45 1 3.6519 -1.5745 2.1952 46 1 2.9811 -0.6526 4.7830 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132383686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:32 Heat of formation + Delta-G solvation = -26.667659 kcal Electronic energy + Delta-G solvation = -26811.532616 eV Core-core repulsion = 23123.519340 eV Total energy + Delta-G solvation = -3688.013277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31694 -38.81037 -37.73391 -37.27888 -34.60893 -33.81822 -32.71098 -30.70732 -29.89317 -27.85418 -26.28041 -25.04498 -23.63886 -22.67015 -22.17614 -21.20482 -20.58351 -20.08335 -18.76730 -18.22161 -16.73925 -16.34040 -15.93628 -15.57397 -15.40479 -14.88307 -14.52202 -14.30542 -14.07230 -13.86237 -13.77412 -13.41606 -13.18946 -12.98239 -12.69284 -12.47741 -11.91672 -11.82452 -11.68690 -11.37025 -11.18268 -11.14569 -10.97021 -10.86911 -10.75236 -10.70909 -10.46917 -10.35280 -10.30501 -9.94583 -9.55886 -9.46093 -9.16332 -9.12897 -8.49219 -8.44054 -6.59617 -5.74395 -3.17888 1.84652 2.68262 3.39661 3.46173 3.47270 3.47507 3.69068 4.03427 4.36510 4.51922 4.61139 4.69533 4.91122 4.99263 5.30959 5.33871 5.35342 5.39535 5.41520 5.51109 5.56423 5.59477 5.60403 5.81533 5.88678 6.00563 6.11334 6.13932 6.31825 6.33813 6.37171 6.44361 6.49337 6.63088 6.64321 6.81805 7.06121 7.13301 7.22850 7.33693 7.63397 7.83124 7.86844 8.11867 8.49249 8.52917 9.24536 9.88744 10.44864 11.33838 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.004534 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.657130 B = 6173.999149 C = 7299.419013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.026 0.974 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.115 3.885 7 H 0.080 0.920 8 N -0.665 5.665 9 C 0.506 3.494 10 O -0.531 6.531 11 C 0.511 3.489 12 O -0.524 6.524 13 N -0.704 5.704 14 C 0.150 3.850 15 C -0.171 4.171 16 C -0.176 4.176 17 C -0.170 4.170 18 C 0.162 3.838 19 N -0.583 5.583 20 C -0.249 4.249 21 H 0.069 0.931 22 C 0.006 3.994 23 N -0.899 5.899 24 Si 0.895 3.105 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.407 0.593 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.030 0.970 45 H 0.095 0.905 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -11.906 -8.406 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.173 4.173 5 C -0.156 4.156 6 C 0.009 3.991 7 H 0.098 0.902 8 N -0.317 5.317 9 C 0.285 3.715 10 O -0.408 6.408 11 C 0.292 3.708 12 O -0.399 6.399 13 N -0.358 5.358 14 C 0.026 3.974 15 C -0.190 4.190 16 C -0.213 4.213 17 C -0.207 4.207 18 C 0.035 3.965 19 N -0.306 5.306 20 C -0.379 4.379 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.544 5.544 24 Si 0.725 3.275 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.244 0.756 36 H 0.249 0.751 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.048 0.952 45 H 0.113 0.887 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.503 -11.856 -8.247 14.861 hybrid contribution -0.460 -0.532 0.875 1.123 sum 3.043 -12.388 -7.372 14.733 Atomic orbital electron populations 1.21799 0.96052 1.01381 1.00136 1.20470 0.93002 0.93589 0.87044 0.95657 1.22094 0.95032 1.00959 0.99187 1.21704 0.97218 1.00136 0.96565 1.21983 0.97073 0.81118 0.98898 0.90217 1.45687 1.29199 1.07964 1.48818 1.19779 0.85024 0.85437 0.81230 1.90728 1.24900 1.84891 1.40307 1.20422 0.84476 0.86062 0.79869 1.90727 1.23838 1.84872 1.40471 1.45697 1.30620 1.08066 1.51402 1.20955 0.96400 0.80321 0.99688 1.22469 1.03915 0.90283 1.02299 1.23094 0.97321 1.02189 0.98731 1.22954 0.98479 0.97270 1.02019 1.21175 0.84026 0.97173 0.94079 1.44047 1.02608 1.64704 1.19240 1.19123 0.94990 1.37685 0.86068 0.91356 1.25040 0.97849 0.99471 0.96921 1.69993 1.24271 1.43398 1.16693 0.86391 0.79893 0.80048 0.81153 1.21660 1.21784 1.20398 0.92845 0.92062 0.94390 0.92456 0.92666 0.92828 0.90805 0.75595 0.75065 0.90597 0.90975 0.86845 0.88492 0.88562 0.88385 0.88375 0.95242 0.88682 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.95 37.16 0.30 -2.23 16 2 C 0.17 3.29 3.50 -67.59 -0.24 3.05 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.17 5.20 -26.61 -0.14 -2.31 16 5 C -0.12 -1.86 5.59 -26.66 -0.15 -2.01 16 6 C 0.11 2.17 2.81 -67.77 -0.19 1.97 16 7 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 8 N -0.67 -12.50 4.91 -54.08 -0.27 -12.77 16 9 C 0.51 9.77 7.86 -11.58 -0.09 9.68 16 10 O -0.53 -11.16 16.14 5.49 0.09 -11.08 16 11 C 0.51 8.96 7.89 -11.59 -0.09 8.86 16 12 O -0.52 -10.02 16.48 5.50 0.09 -9.93 16 13 N -0.70 -9.93 5.55 -60.73 -0.34 -10.27 16 14 C 0.15 1.73 5.96 -4.04 -0.02 1.71 16 15 C -0.17 -1.56 5.85 -90.62 -0.53 -2.08 16 16 C -0.18 -1.34 10.18 -26.73 -0.27 -1.62 16 17 C -0.17 -1.29 10.25 -26.74 -0.27 -1.57 16 18 C 0.16 3.82 4.89 -3.71 -0.02 3.80 16 19 N -0.58 -13.93 2.90 -164.77 -0.48 -14.40 16 20 C -0.25 -6.65 8.58 -15.06 -0.13 -6.78 16 21 H 0.07 1.81 6.22 -52.49 -0.33 1.49 16 22 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 23 N -0.90 -26.26 11.25 55.49 0.62 -25.64 16 24 Si 0.89 22.26 29.58 -169.99 -5.03 17.23 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 28 H 0.05 1.02 7.40 -51.93 -0.38 0.63 16 29 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.96 6.41 -51.93 -0.33 0.63 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.41 7.44 6.25 -40.82 -0.26 7.19 16 36 H 0.41 5.41 7.87 -40.82 -0.32 5.08 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 39 H 0.11 1.02 8.04 -51.93 -0.42 0.60 16 40 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 2.63 6.14 -51.93 -0.32 2.31 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -31.23 368.77 -9.02 -40.25 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -7.34 Total: 10.47 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -1.93 Total: 10.56 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.46 Total: -63.08 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.18 Total: -21.00 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.23 -9.02 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132383686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.586 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds