Wall clock time and date at job start Tue Mar 31 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.58705 * 2 1 4 4 C 1.53193 * 109.58763 * 239.71384 * 2 1 3 5 5 C 1.53036 * 109.34243 * 185.56365 * 4 2 1 6 6 C 1.53110 * 109.50412 * 61.34603 * 5 4 2 7 7 H 1.08992 * 109.48739 * 178.70411 * 6 5 4 8 8 N 1.46504 * 109.50925 * 58.63046 * 6 5 4 9 9 C 1.34776 * 119.99346 * 155.12623 * 8 6 5 10 10 O 1.21353 * 120.00482 * 0.02562 * 9 8 6 11 11 C 1.49452 * 119.99985 * 179.97438 * 9 8 6 12 12 O 1.21346 * 119.99959 * 0.02562 * 11 9 8 13 13 N 1.34770 * 120.00120 * 180.02562 * 11 9 8 14 14 C 1.46500 * 120.00002 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47413 * 179.97438 * 14 13 11 16 16 C 1.53000 * 117.50134 * 243.62237 * 15 14 13 17 17 C 1.52993 * 59.99930 * 252.50844 * 16 15 14 18 18 C 1.53191 * 109.32916 * 298.66061 * 6 5 4 19 19 N 1.46928 * 109.58427 * 120.42755 * 2 1 3 20 20 C 1.36938 * 120.63317 * 353.41554 * 19 2 1 21 21 H 1.08000 * 120.00005 * 29.54168 * 20 19 2 22 22 C 1.38813 * 120.00008 * 209.54646 * 20 19 2 23 23 N 1.31614 * 120.00094 * 16.10568 * 22 20 19 24 24 Si 1.86797 * 119.99917 * 196.11360 * 22 20 19 25 25 H 1.48503 * 109.47026 * 92.95396 * 24 22 20 26 26 H 1.48495 * 109.47320 * 212.95726 * 24 22 20 27 27 H 1.48501 * 109.47026 * 332.95755 * 24 22 20 28 28 H 1.08994 * 109.46789 * 180.28713 * 1 2 3 29 29 H 1.09004 * 109.46527 * 300.28509 * 1 2 3 30 30 H 1.08999 * 109.46827 * 60.28303 * 1 2 3 31 31 H 1.09000 * 109.49757 * 305.53330 * 4 2 1 32 32 H 1.09003 * 109.49185 * 65.59498 * 4 2 1 33 33 H 1.08995 * 109.46042 * 181.40489 * 5 4 2 34 34 H 1.09005 * 109.45895 * 301.35972 * 5 4 2 35 35 H 0.97000 * 120.00597 * 335.12912 * 8 6 5 36 36 H 0.96998 * 120.00478 * 0.02562 * 13 11 9 37 37 H 1.09004 * 109.47269 * 300.00006 * 14 13 11 38 38 H 1.09004 * 109.47148 * 60.00146 * 14 13 11 39 39 H 1.09000 * 115.54932 * 29.32718 * 15 14 13 40 40 H 1.09004 * 117.49298 * 0.02562 * 16 15 14 41 41 H 1.08999 * 117.50188 * 145.01160 * 16 15 14 42 42 H 1.08997 * 117.49932 * 252.50650 * 17 16 15 43 43 H 1.09006 * 117.51770 * 107.48214 * 17 16 15 44 44 H 1.08995 * 109.58817 * 294.84431 * 18 6 5 45 45 H 1.09003 * 109.58283 * 174.42189 * 18 6 5 46 46 H 0.96997 * 120.00299 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5676 -0.8466 -1.1720 6 6 3.9570 -1.6659 0.0615 7 1 5.0412 -1.7698 0.1015 8 7 3.3410 -2.9928 -0.0181 9 6 3.8964 -4.0335 0.6336 10 8 4.9064 -3.8715 1.2867 11 6 3.2679 -5.3871 0.5530 12 8 2.2578 -5.5491 -0.0996 13 7 3.8230 -6.4277 1.2052 14 6 3.2072 -7.7546 1.1257 15 6 4.0292 -8.7486 1.9486 16 6 4.6992 -9.9023 1.1995 17 6 3.4837 -10.1711 2.0890 18 6 3.4651 -0.9486 1.3225 19 7 2.0226 -0.7011 1.1936 20 6 1.1536 -1.1162 2.1672 21 1 0.1384 -1.3787 1.9087 22 6 1.5777 -1.1995 3.4864 23 7 2.6845 -0.5941 3.8613 24 14 0.5774 -2.1709 4.7294 25 1 1.0936 -3.5615 4.8018 26 1 0.6903 -1.5308 6.0645 27 1 -0.8469 -2.1929 4.3098 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3632 0.5183 0.8875 30 1 -0.3633 0.5094 -0.8925 31 1 1.6030 -1.7237 -1.2935 32 1 1.7656 -0.1644 -2.1370 33 1 3.9374 -1.3421 -2.0696 34 1 4.0063 0.1487 -1.1000 35 1 2.5336 -3.1223 -0.5398 36 1 4.6302 -6.2982 1.7271 37 1 2.1919 -7.7082 1.5197 38 1 3.1789 -8.0804 0.0858 39 1 4.5601 -8.3267 2.8020 40 1 4.5545 -9.9529 0.1203 41 1 5.6711 -10.2394 1.5599 42 1 3.6559 -10.6851 3.0346 43 1 2.5389 -10.3988 1.5954 44 1 3.9904 0.0002 1.4317 45 1 3.6519 -1.5745 2.1952 46 1 2.9811 -0.6526 4.7830 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132383686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:31 Heat of formation + Delta-G solvation = -48.060990 kcal Electronic energy + Delta-G solvation = -26812.460301 eV Core-core repulsion = 23123.519340 eV Total energy + Delta-G solvation = -3688.940961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76040 -40.22629 -39.00934 -38.44416 -36.07967 -35.20461 -34.48648 -32.24917 -31.75287 -28.96321 -27.89317 -26.85618 -25.01911 -23.87656 -23.25767 -22.18139 -22.07006 -21.45034 -20.42671 -19.52338 -18.35932 -17.77442 -17.31488 -17.05834 -16.88916 -16.34603 -15.95220 -15.64101 -15.51949 -15.30705 -15.03809 -14.78891 -14.61582 -14.47672 -14.06671 -14.02843 -13.66303 -13.03694 -12.89020 -12.80504 -12.60719 -12.58177 -12.46230 -12.42113 -12.37753 -12.12961 -12.07545 -11.58792 -11.43173 -11.23647 -11.21810 -11.07533 -10.66464 -10.52433 -10.28443 -10.09942 -8.57825 -7.83679 -5.27911 0.38518 1.36519 1.38489 1.41331 1.48262 2.19793 2.48756 2.64948 2.89500 3.31318 3.48602 3.61508 3.62938 3.95203 3.98690 4.04776 4.08851 4.18167 4.20535 4.46521 4.56043 4.62046 4.64404 4.72531 4.79487 4.79660 4.94848 5.00214 5.01211 5.04184 5.05222 5.11473 5.25158 5.25328 5.26746 5.31476 5.50830 5.55889 5.62051 5.70558 5.73144 5.96053 6.40432 6.43878 6.75230 7.02643 7.18517 7.92157 8.42344 9.21503 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.004534 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.657130 B = 6173.999149 C = 7299.419013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.021 0.979 4 C -0.123 4.123 5 C -0.110 4.110 6 C 0.123 3.877 7 H 0.081 0.919 8 N -0.661 5.661 9 C 0.499 3.501 10 O -0.554 6.554 11 C 0.510 3.490 12 O -0.543 6.543 13 N -0.689 5.689 14 C 0.149 3.851 15 C -0.185 4.185 16 C -0.168 4.168 17 C -0.163 4.163 18 C 0.171 3.829 19 N -0.596 5.596 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.049 4.049 23 N -0.932 5.932 24 Si 0.945 3.055 25 H -0.297 1.297 26 H -0.295 1.295 27 H -0.266 1.266 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.411 0.589 36 H 0.418 0.582 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.008 0.992 45 H 0.049 0.951 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 -13.118 -10.553 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.038 0.962 4 C -0.162 4.162 5 C -0.148 4.148 6 C 0.017 3.983 7 H 0.099 0.901 8 N -0.313 5.313 9 C 0.279 3.721 10 O -0.433 6.433 11 C 0.290 3.710 12 O -0.420 6.420 13 N -0.343 5.343 14 C 0.026 3.974 15 C -0.204 4.204 16 C -0.205 4.205 17 C -0.200 4.200 18 C 0.044 3.956 19 N -0.320 5.320 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.244 4.244 23 N -0.579 5.579 24 Si 0.775 3.225 25 H -0.225 1.225 26 H -0.222 1.222 27 H -0.190 1.190 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.249 0.751 36 H 0.255 0.745 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.006 -13.087 -10.421 16.997 hybrid contribution -0.311 -0.145 1.516 1.554 sum 2.695 -13.232 -8.905 16.175 Atomic orbital electron populations 1.21728 0.95006 1.01058 1.00853 1.20772 0.94015 0.93416 0.86897 0.96168 1.21986 0.95072 1.00812 0.98338 1.21698 0.97038 1.00237 0.95836 1.21784 0.96966 0.81245 0.98273 0.90131 1.45682 1.29257 1.07785 1.48541 1.20227 0.84807 0.86424 0.80648 1.90711 1.25969 1.85453 1.41186 1.20135 0.84408 0.85968 0.80439 1.90712 1.24597 1.85008 1.41727 1.45766 1.30273 1.08344 1.49870 1.21115 0.96273 0.79382 1.00599 1.22386 1.04907 0.90483 1.02616 1.23181 0.97887 1.00455 0.98970 1.23063 0.98780 0.95545 1.02622 1.20882 0.84156 0.95759 0.94828 1.44264 1.02356 1.65410 1.19971 1.19389 0.95266 1.35752 0.86578 0.91202 1.25651 0.99032 1.01108 0.98655 1.70140 1.25977 1.45471 1.16296 0.85575 0.79388 0.78272 0.79278 1.22515 1.22212 1.19041 0.93559 0.94538 0.90539 0.92619 0.88955 0.89488 0.89913 0.75100 0.74500 0.91531 0.90323 0.86827 0.88109 0.87463 0.87297 0.87939 0.97415 0.93280 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 7.95 71.98 0.57 -3.97 16 2 C 0.15 5.89 3.50 44.98 0.16 6.04 16 3 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.12 -3.59 5.20 30.67 0.16 -3.43 16 5 C -0.11 -3.13 5.59 30.64 0.17 -2.96 16 6 C 0.12 4.56 2.81 45.09 0.13 4.69 16 7 H 0.08 2.99 7.58 -2.39 -0.02 2.97 16 8 N -0.66 -24.48 4.91 -443.38 -2.18 -26.66 16 9 C 0.50 19.33 7.86 87.27 0.69 20.02 16 10 O -0.55 -23.74 16.14 -3.26 -0.05 -23.80 16 11 C 0.51 17.76 7.89 87.27 0.69 18.45 16 12 O -0.54 -20.45 16.48 -3.23 -0.05 -20.51 16 13 N -0.69 -19.17 5.55 -464.41 -2.58 -21.75 16 14 C 0.15 3.31 5.96 86.38 0.51 3.82 16 15 C -0.19 -3.11 5.85 -10.79 -0.06 -3.17 16 16 C -0.17 -2.20 10.18 30.59 0.31 -1.88 16 17 C -0.16 -2.14 10.25 30.59 0.31 -1.83 16 18 C 0.17 8.23 4.89 86.36 0.42 8.65 16 19 N -0.60 -28.66 2.90 -675.20 -1.96 -30.62 16 20 C -0.24 -12.94 8.58 84.03 0.72 -12.21 16 21 H 0.07 3.71 6.22 -2.91 -0.02 3.69 16 22 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 23 N -0.93 -56.65 11.25 21.65 0.24 -56.41 16 24 Si 0.94 46.79 29.58 68.60 2.03 48.82 16 25 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 26 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 H 0.05 1.67 7.40 -2.39 -0.02 1.66 16 29 H 0.04 1.43 7.66 -2.39 -0.02 1.41 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.68 6.41 -2.39 -0.02 1.66 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.41 14.51 6.25 -92.71 -0.58 13.93 16 36 H 0.42 10.84 7.87 -92.71 -0.73 10.11 16 37 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.08 1.66 7.87 -2.38 -0.02 1.64 16 39 H 0.11 1.91 8.04 -2.39 -0.02 1.89 16 40 H 0.10 1.25 8.03 -2.39 -0.02 1.23 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.05 2.83 6.14 -2.39 -0.01 2.81 16 46 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -69.75 368.77 0.34 -69.41 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.31 Total: 31.68 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 5.20 Total: 29.83 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -6.47 Total: -135.43 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.11 Total: -44.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -69.75 0.34 -69.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132383686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.346 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds