Wall clock time and date at job start Tue Mar 31 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.87130 * 2 1 4 4 C 1.54318 * 109.88617 * 121.17991 * 2 1 3 5 5 H 1.08999 * 110.71945 * 215.76713 * 4 2 1 6 6 N 1.46900 * 110.71999 * 338.86131 * 4 2 1 7 7 C 1.46908 * 111.00088 * 198.47373 * 6 4 2 8 8 C 1.50703 * 109.46958 * 179.97438 * 7 6 4 9 9 O 1.21297 * 120.00130 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99583 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99446 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00321 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99885 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99996 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00298 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47035 * 59.99883 * 15 13 11 17 17 H 1.48504 * 109.47248 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46955 * 299.99958 * 15 13 11 19 19 C 1.55275 * 103.01158 * 97.29968 * 4 2 1 20 20 C 1.54918 * 101.52515 * 35.36132 * 19 4 2 21 21 N 1.47023 * 109.88130 * 238.98895 * 2 1 3 22 22 C 1.34777 * 125.64892 * 59.54009 * 21 2 1 23 23 O 1.21275 * 120.00510 * 0.02562 * 22 21 2 24 24 C 1.50709 * 119.99810 * 180.02562 * 22 21 2 25 25 C 1.53779 * 113.60940 * 277.49585 * 24 22 21 26 26 C 1.53784 * 87.08101 * 220.02039 * 25 24 22 27 27 C 1.53780 * 113.61113 * 180.02562 * 24 22 21 28 28 H 1.09007 * 109.46953 * 187.14476 * 1 2 3 29 29 H 1.09005 * 109.47223 * 307.13980 * 1 2 3 30 30 H 1.09000 * 109.47332 * 67.14504 * 1 2 3 31 31 H 1.00907 * 110.99941 * 322.42592 * 6 4 2 32 32 H 1.08997 * 109.46552 * 299.99593 * 7 6 4 33 33 H 1.08992 * 109.47149 * 59.99993 * 7 6 4 34 34 H 0.96992 * 120.00144 * 359.97438 * 10 8 7 35 35 H 0.96996 * 120.00698 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.96281 * 277.33900 * 19 4 2 37 37 H 1.09001 * 111.10167 * 153.44824 * 19 4 2 38 38 H 1.08990 * 110.36564 * 204.23254 * 20 19 4 39 39 H 1.09005 * 110.36114 * 82.01909 * 20 19 4 40 40 H 1.09000 * 112.84816 * 48.80196 * 24 22 21 41 41 H 1.08997 * 113.62006 * 334.56550 * 25 24 22 42 42 H 1.09008 * 113.61384 * 105.47412 * 25 24 22 43 43 H 1.08998 * 113.61428 * 270.89036 * 26 25 24 44 44 H 1.08991 * 113.61776 * 139.98188 * 26 25 24 45 45 H 1.09005 * 113.61315 * 254.52749 * 27 24 22 46 46 H 1.08997 * 113.61580 * 25.43008 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2415 5 1 2.9639 -0.2836 1.6196 6 7 1.0266 -0.8061 2.2891 7 6 1.6229 -1.1101 3.5969 8 6 0.5401 -1.1573 4.6440 9 8 -0.6149 -0.9579 4.3315 10 7 0.8549 -1.4222 5.9274 11 6 -0.1302 -1.4657 6.8798 12 1 -1.1584 -1.2873 6.6018 13 6 0.1944 -1.7383 8.2031 14 7 1.4456 -1.9548 8.5415 15 14 -1.1478 -1.7968 9.5011 16 1 -2.1317 -2.8516 9.1484 17 1 -0.5449 -2.1035 10.8231 18 1 -1.8336 -0.4812 9.5636 19 6 2.3546 -2.1715 0.6899 20 6 2.8567 -1.8487 -0.7396 21 7 2.0300 -0.7123 -1.1850 22 6 1.7750 -0.3811 -2.4663 23 8 1.0786 0.5796 -2.7173 24 6 2.3553 -1.2045 -3.5872 25 6 3.8062 -0.8337 -3.9366 26 6 3.4144 -1.0157 -5.4125 27 6 1.9719 -0.6963 -4.9871 28 1 -0.3633 -1.0198 0.1278 29 1 -0.3634 0.6205 0.8193 30 1 -0.3634 0.3991 -0.9470 31 1 0.4990 0.0534 2.3233 32 1 2.1266 -2.0756 3.5508 33 1 2.3447 -0.3356 3.8559 34 1 1.7783 -1.5828 6.1770 35 1 1.6723 -2.1447 9.4653 36 1 1.4486 -2.7768 0.6584 37 1 3.1313 -2.6639 1.2750 38 1 2.7087 -2.7060 -1.3962 39 1 3.9093 -1.5662 -0.7171 40 1 2.1970 -2.2744 -3.4522 41 1 4.0692 0.1920 -3.6780 42 1 4.5391 -1.5607 -3.5865 43 1 3.5470 -2.0343 -5.7770 44 1 3.8497 -0.2679 -6.0752 45 1 1.2234 -1.3124 -5.4854 46 1 1.7336 0.3669 -5.0155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178026043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:53 Heat of formation + Delta-G solvation = -67.646857 kcal Electronic energy + Delta-G solvation = -25632.926071 eV Core-core repulsion = 21943.135803 eV Total energy + Delta-G solvation = -3689.790268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64502 -40.26286 -39.54011 -37.98907 -36.19361 -35.54613 -33.27404 -32.34873 -31.70213 -28.41927 -27.45639 -26.57711 -26.47805 -25.29628 -23.96247 -21.53199 -21.05550 -20.46059 -19.92039 -19.83703 -18.43166 -17.76625 -17.17389 -16.97374 -16.80087 -16.37419 -16.23791 -15.87412 -15.58683 -15.30831 -14.88773 -14.45872 -14.32962 -14.04972 -13.89419 -13.51307 -13.43212 -13.37434 -13.24311 -13.14688 -12.97325 -12.86822 -12.65027 -12.43156 -12.36017 -12.13247 -12.10248 -11.85122 -11.64014 -11.49722 -11.40369 -11.27539 -10.64563 -10.32964 -10.00780 -9.69334 -9.35340 -8.46150 -5.94567 1.39891 1.41932 1.52492 1.60018 1.92168 2.06794 2.29781 2.92285 3.21284 3.30387 3.51797 3.58364 3.65778 3.68457 3.80750 3.93166 4.03762 4.14448 4.26465 4.30894 4.32941 4.44651 4.52191 4.59674 4.63680 4.69456 4.70188 4.77582 4.81368 4.88166 5.00768 5.04048 5.05413 5.10512 5.19513 5.26323 5.29866 5.40388 5.41543 5.54647 5.89503 6.10850 6.31823 6.55301 6.61240 7.13525 7.16467 7.57544 8.13259 8.70876 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.044586 B = 0.002263 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.846918 B =12367.772247 C =12755.685381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.136 3.864 3 H 0.066 0.934 4 C 0.080 3.920 5 H 0.077 0.923 6 N -0.669 5.669 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.120 4.120 20 C 0.102 3.898 21 N -0.610 5.610 22 C 0.529 3.471 23 O -0.587 6.587 24 C -0.133 4.133 25 C -0.116 4.116 26 C -0.130 4.130 27 C -0.129 4.129 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.345 0.655 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.278 0.722 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.135 0.865 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.969 -2.182 -23.101 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.084 0.916 4 C -0.030 4.030 5 H 0.094 0.906 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.198 1.198 19 C -0.159 4.159 20 C -0.020 4.020 21 N -0.343 5.343 22 C 0.320 3.680 23 O -0.468 6.468 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.167 4.167 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.166 0.834 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.152 0.848 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.757 -2.216 -23.445 25.890 hybrid contribution -0.250 1.035 1.421 1.776 sum 10.507 -1.181 -22.024 24.430 Atomic orbital electron populations 1.21835 0.95236 1.02240 1.00954 1.21496 0.94573 0.95553 0.85182 0.91625 1.22640 0.93366 0.97298 0.89690 0.90571 1.60317 1.24616 1.42208 1.03138 1.21576 0.93762 1.03544 0.87697 1.20919 0.90582 0.82243 0.83795 1.90504 1.23041 1.56089 1.81479 1.41911 1.10258 1.62499 1.06332 1.19604 0.90724 1.47468 0.88554 0.90481 1.26010 0.99448 0.96253 0.99531 1.69654 1.18051 1.48008 1.20262 0.85014 0.77694 0.78813 0.76973 1.19794 1.19435 1.19850 1.22909 1.02493 0.95482 0.94985 1.22581 0.95345 0.88650 0.95408 1.48650 1.50417 1.30900 1.04352 1.20936 0.79471 0.84739 0.82874 1.90655 1.40801 1.31352 1.83968 1.22930 0.99330 1.01021 0.92083 1.22797 0.93366 1.02260 0.96915 1.22815 0.94546 1.03366 0.95966 1.22832 0.98704 1.01436 0.93732 0.92517 0.92131 0.93449 0.83447 0.87174 0.91370 0.76875 0.91290 0.91098 0.87718 0.88201 0.88762 0.84775 0.91184 0.88207 0.87800 0.90673 0.90529 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 8.30 71.98 0.60 -3.58 16 2 C 0.14 3.28 3.41 45.34 0.15 3.44 16 3 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.08 1.74 3.10 46.14 0.14 1.88 16 5 H 0.08 1.42 7.92 -2.39 -0.02 1.40 16 6 N -0.67 -19.99 5.12 -489.24 -2.50 -22.49 16 7 C 0.07 2.12 6.02 85.56 0.52 2.64 16 8 C 0.44 20.34 7.82 87.66 0.69 21.02 16 9 O -0.62 -34.43 15.78 -3.08 -0.05 -34.48 16 10 N -0.57 -28.88 5.29 -306.98 -1.62 -30.50 16 11 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 12 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 13 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 14 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 15 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 C -0.12 -2.03 6.65 32.03 0.21 -1.81 16 20 C 0.10 1.31 6.69 86.86 0.58 1.89 16 21 N -0.61 -12.55 3.08 -788.05 -2.43 -14.98 16 22 C 0.53 12.37 7.15 87.66 0.63 13.00 16 23 O -0.59 -19.09 14.71 -3.02 -0.04 -19.13 16 24 C -0.13 -1.94 3.31 -11.01 -0.04 -1.98 16 25 C -0.12 -1.22 7.63 31.12 0.24 -0.98 16 26 C -0.13 -1.22 8.08 31.11 0.25 -0.97 16 27 C -0.13 -1.98 7.40 31.11 0.23 -1.75 16 28 H 0.06 1.75 8.05 -2.38 -0.02 1.73 16 29 H 0.06 1.80 6.72 -2.38 -0.02 1.78 16 30 H 0.05 1.52 6.54 -2.39 -0.02 1.50 16 31 H 0.34 11.37 6.41 -89.69 -0.58 10.80 16 32 H 0.11 3.04 8.07 -2.39 -0.02 3.02 16 33 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 34 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 35 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 0.87 7.24 -2.39 -0.02 0.85 16 39 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.13 1.35 7.47 -2.39 -0.02 1.33 16 41 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 42 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.07 1.41 7.43 -2.39 -0.02 1.40 16 Total: -1.00 -73.39 369.18 0.83 -72.57 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.31 Total: 38.36 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.48 Total: 14.54 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -6.27 Total: -116.71 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.09 Total: -53.61 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -73.39 0.83 -72.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178026043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.919 kcal (2) G-P(sol) polarization free energy of solvation -73.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds