Wall clock time and date at job start Tue Mar 31 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50700 * 119.99988 * 2 1 4 4 C 1.32997 * 120.00217 * 180.02562 * 2 1 3 5 5 C 1.47104 * 119.99526 * 5.62869 * 4 2 1 6 6 O 1.21609 * 120.00298 * 354.71274 * 5 4 2 7 7 N 1.34779 * 119.99630 * 174.72476 * 5 4 2 8 8 C 1.47428 * 125.64862 * 359.96775 * 7 5 4 9 9 C 1.54910 * 104.82940 * 204.16904 * 8 7 5 10 10 C 1.55152 * 101.58421 * 322.99320 * 9 8 7 11 11 H 1.09007 * 110.71690 * 276.95931 * 10 9 8 12 12 N 1.46900 * 110.72305 * 153.86686 * 10 9 8 13 13 C 1.46904 * 110.99650 * 86.45408 * 12 10 9 14 14 C 1.50704 * 109.46622 * 180.02562 * 13 12 10 15 15 O 1.21292 * 120.00187 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99886 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99988 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00030 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99632 * 179.72588 * 17 16 14 20 20 N 1.31410 * 120.00214 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99622 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47558 * 59.99922 * 21 19 17 23 23 H 1.48500 * 109.47081 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47176 * 299.99506 * 21 19 17 25 25 C 1.47021 * 125.64658 * 180.02562 * 7 5 4 26 26 H 1.09002 * 109.88652 * 298.31564 * 25 7 5 27 27 C 1.52998 * 109.88257 * 59.48435 * 25 7 5 28 28 H 1.08999 * 109.46321 * 238.24905 * 1 2 3 29 29 H 1.08998 * 109.47068 * 358.24503 * 1 2 3 30 30 H 1.08998 * 109.47468 * 118.25117 * 1 2 3 31 31 H 1.08995 * 109.47005 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47272 * 300.00252 * 3 2 1 33 33 H 1.08998 * 109.47367 * 60.00680 * 3 2 1 34 34 H 1.07997 * 120.00209 * 185.63305 * 4 2 1 35 35 H 1.08993 * 110.36510 * 85.33143 * 8 7 5 36 36 H 1.08995 * 110.45663 * 323.05354 * 8 7 5 37 37 H 1.09002 * 111.00083 * 204.91806 * 9 8 7 38 38 H 1.09000 * 111.03900 * 81.08081 * 9 8 7 39 39 H 1.00899 * 111.00014 * 210.40420 * 12 10 9 40 40 H 1.08997 * 109.47505 * 60.00191 * 13 12 10 41 41 H 1.09005 * 109.46834 * 299.99601 * 13 12 10 42 42 H 0.97001 * 119.99934 * 359.97438 * 16 14 13 43 43 H 0.96998 * 119.99826 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.47110 * 177.80810 * 27 25 7 45 45 H 1.09003 * 109.47097 * 297.80591 * 27 25 7 46 46 H 1.08997 * 109.47549 * 57.80688 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1721 -1.1518 -0.0005 5 6 1.4418 -2.4226 -0.1260 6 8 0.2258 -2.4270 -0.1325 7 7 2.1206 -3.5820 -0.2336 8 6 3.5883 -3.7210 -0.2400 9 6 3.8571 -5.0540 -0.9820 10 6 2.6777 -5.9308 -0.4844 11 1 2.9082 -6.3732 0.4848 12 7 2.3556 -6.9746 -1.4666 13 6 3.1885 -8.1669 -1.2599 14 6 2.8308 -9.2131 -2.2839 15 8 1.9673 -8.9876 -3.1053 16 7 3.4711 -10.3992 -2.2876 17 6 3.1460 -11.3507 -3.2195 18 1 2.3772 -11.1499 -3.9509 19 6 3.8101 -12.5712 -3.2268 20 7 4.7500 -12.8132 -2.3409 21 14 3.3677 -13.8675 -4.4970 22 1 3.5994 -13.3248 -5.8597 23 1 4.2149 -15.0699 -4.2929 24 1 1.9374 -14.2383 -4.3484 25 6 1.5199 -4.9174 -0.3652 26 1 0.9197 -5.1425 0.5164 27 6 0.6474 -4.9741 -1.6207 28 1 -0.3632 -0.5408 0.8739 29 1 -0.3633 1.0272 0.0315 30 1 -0.3634 -0.4864 -0.9052 31 1 3.3321 1.1059 -0.0005 32 1 1.9972 1.8767 -0.8900 33 1 1.9973 1.8766 0.8900 34 1 3.2481 -1.1541 0.0913 35 1 3.9690 -3.7711 0.7800 36 1 4.0473 -2.8897 -0.7751 37 1 4.8145 -5.4810 -0.6835 38 1 3.8128 -4.9163 -2.0624 39 1 1.3747 -7.2092 -1.4364 40 1 3.0145 -8.5628 -0.2594 41 1 4.2397 -7.8988 -1.3669 42 1 4.1624 -10.5792 -1.6314 43 1 5.2139 -13.6651 -2.3463 44 1 0.2369 -5.9777 -1.7329 45 1 -0.1677 -4.2562 -1.5294 46 1 1.2513 -4.7289 -2.4943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178065613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:00 Heat of formation + Delta-G solvation = -71.186406 kcal Electronic energy + Delta-G solvation = -25389.061458 eV Core-core repulsion = 21699.117704 eV Total energy + Delta-G solvation = -3689.943754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41428 -40.16362 -39.15647 -36.38011 -36.11181 -35.54382 -33.27589 -32.36946 -31.77362 -28.90636 -28.62319 -27.98113 -26.54867 -25.40273 -24.12598 -21.78815 -21.07257 -20.36466 -19.90665 -19.07250 -18.24253 -17.77073 -17.11714 -16.91918 -16.36935 -16.35124 -16.02137 -15.64711 -15.40050 -15.10600 -14.74382 -14.69078 -14.33190 -14.11194 -14.00694 -13.56281 -13.47987 -13.39501 -13.27100 -13.08931 -13.03745 -12.90140 -12.76082 -12.57026 -12.43688 -12.42616 -12.23867 -12.12325 -11.85689 -11.62762 -11.49650 -10.57209 -10.32890 -10.13623 -10.00750 -9.55536 -9.35268 -8.46058 -5.94488 0.42863 1.39982 1.41974 1.52604 1.97782 2.06747 2.29264 2.32197 2.92640 3.21387 3.34065 3.52161 3.68580 3.80751 3.93666 4.04288 4.24330 4.26661 4.31144 4.34270 4.45039 4.52691 4.57976 4.60896 4.64814 4.68930 4.69786 4.76526 4.80705 4.92986 4.98838 5.02458 5.08028 5.19315 5.26406 5.31340 5.41250 5.41794 5.55671 5.68525 5.89608 6.10888 6.32599 6.60216 6.61480 7.13530 7.22752 7.57488 8.13171 8.70969 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.042534 B = 0.002203 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.142684 B =12706.317189 C =13058.586407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.030 4.030 3 C -0.122 4.122 4 C -0.244 4.244 5 C 0.548 3.452 6 O -0.580 6.580 7 N -0.612 5.612 8 C 0.102 3.898 9 C -0.120 4.120 10 C 0.079 3.921 11 H 0.077 0.923 12 N -0.669 5.669 13 C 0.066 3.934 14 C 0.437 3.563 15 O -0.624 6.624 16 N -0.572 5.572 17 C -0.334 4.334 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.139 3.861 26 H 0.067 0.933 27 C -0.142 4.142 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.345 0.655 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 24.856 9.973 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.032 4.032 3 C -0.179 4.179 4 C -0.264 4.264 5 C 0.342 3.658 6 O -0.462 6.462 7 N -0.345 5.345 8 C -0.020 4.020 9 C -0.158 4.158 10 C -0.031 4.031 11 H 0.095 0.905 12 N -0.304 5.304 13 C -0.066 4.066 14 C 0.225 3.775 15 O -0.511 6.511 16 N -0.210 5.210 17 C -0.464 4.464 18 H 0.095 0.905 19 C -0.213 4.213 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.198 1.198 25 C 0.035 3.965 26 H 0.086 0.914 27 C -0.200 4.200 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.170 0.830 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.167 0.833 40 H 0.087 0.913 41 H 0.127 0.873 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.430 25.138 8.990 26.735 hybrid contribution -0.469 -1.657 0.328 1.753 sum 0.962 23.481 9.318 25.281 Atomic orbital electron populations 1.20949 0.92032 1.01763 1.02451 1.22903 0.96424 0.95849 0.88017 1.21072 1.00187 0.92649 1.03949 1.22496 1.01212 0.90337 1.12364 1.18848 0.86714 0.84188 0.76017 1.90749 1.15278 1.87306 1.52888 1.48486 1.08605 1.05204 1.72232 1.22558 0.78821 0.98705 1.01925 1.22877 0.98312 0.93771 1.00850 1.22630 0.95005 0.91151 0.94294 0.90473 1.60376 1.09796 1.08965 1.51233 1.21587 1.00011 0.89206 0.95844 1.20911 0.84473 0.83899 0.88250 1.90501 1.36499 1.80484 1.43613 1.41914 1.35523 1.12934 1.30617 1.19610 1.20363 0.95013 1.11384 0.90461 1.26014 0.95626 0.99785 0.99828 1.69657 1.24222 1.25944 1.36145 0.85009 0.78288 0.77145 0.78017 1.19820 1.19432 1.19813 1.21464 0.94414 0.82775 0.97896 0.91448 1.21834 0.99404 1.01454 0.97332 0.91907 0.90723 0.92173 0.90011 0.89417 0.89281 0.83036 0.88995 0.88440 0.87832 0.91189 0.83308 0.91332 0.87250 0.76882 0.91296 0.91871 0.93274 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.34 71.24 0.59 -1.55 16 2 C -0.03 -0.46 6.11 -17.61 -0.11 -0.56 16 3 C -0.12 -0.92 10.04 71.24 0.72 -0.20 16 4 C -0.24 -4.16 9.03 23.43 0.21 -3.95 16 5 C 0.55 13.52 7.54 86.57 0.65 14.18 16 6 O -0.58 -18.25 12.01 -4.06 -0.05 -18.30 16 7 N -0.61 -13.47 3.08 -792.29 -2.44 -15.91 16 8 C 0.10 1.49 6.49 86.85 0.56 2.05 16 9 C -0.12 -2.17 6.71 31.98 0.21 -1.96 16 10 C 0.08 1.78 3.11 46.10 0.14 1.93 16 11 H 0.08 1.49 7.89 -2.38 -0.02 1.48 16 12 N -0.67 -20.40 5.21 -489.43 -2.55 -22.96 16 13 C 0.07 2.14 6.02 85.56 0.52 2.65 16 14 C 0.44 20.51 7.82 87.66 0.69 21.19 16 15 O -0.62 -34.62 15.78 -3.07 -0.05 -34.66 16 16 N -0.57 -29.05 5.29 -306.97 -1.62 -30.68 16 17 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 18 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 20 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 21 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.14 3.44 3.41 45.34 0.15 3.59 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 C -0.14 -4.15 8.40 71.98 0.60 -3.54 16 28 H 0.06 1.40 7.32 -2.39 -0.02 1.38 16 29 H 0.07 0.98 8.00 -2.39 -0.02 0.96 16 30 H 0.06 1.41 7.14 -2.39 -0.02 1.39 16 31 H 0.08 0.42 7.82 -2.39 -0.02 0.40 16 32 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.15 1.66 6.77 -2.91 -0.02 1.64 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.07 7.22 -2.39 -0.02 1.05 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.35 11.53 6.14 -89.69 -0.55 10.98 16 40 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.11 3.10 8.13 -2.38 -0.02 3.08 16 42 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 43 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.06 1.90 6.23 -2.38 -0.01 1.89 16 45 H 0.05 1.56 6.76 -2.39 -0.02 1.54 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -72.78 371.39 1.54 -71.24 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -0.29 Total: 39.69 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 6.23 Total: 15.48 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -6.33 Total: -118.46 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.10 Total: -52.96 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.78 1.54 -71.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178065613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.055 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds