Wall clock time and date at job start Tue Mar 31 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 115.56098 * 2 1 4 4 C 1.52995 * 117.49891 * 145.69203 * 2 1 3 5 5 C 1.52994 * 60.00242 * 107.48848 * 4 2 1 6 6 H 1.08997 * 117.50074 * 252.48482 * 5 4 2 7 7 C 1.50702 * 117.50037 * 107.48689 * 5 4 2 8 8 O 1.21280 * 119.99916 * 291.39905 * 7 5 4 9 9 N 1.34775 * 120.00103 * 111.38983 * 7 5 4 10 10 C 1.47030 * 125.64659 * 359.96257 * 9 7 5 11 11 C 1.54372 * 107.28731 * 181.12542 * 10 9 7 12 12 C 1.55149 * 102.92096 * 22.14115 * 11 10 9 13 13 H 1.08995 * 111.00863 * 82.64012 * 12 11 10 14 14 N 1.46898 * 111.00391 * 206.45438 * 12 11 10 15 15 C 1.46902 * 111.00283 * 171.46699 * 14 12 11 16 16 C 1.46906 * 110.99888 * 295.41661 * 14 12 11 17 17 C 1.50701 * 109.46965 * 170.00033 * 16 14 12 18 18 O 1.21289 * 120.00042 * 0.02562 * 17 16 14 19 19 N 1.34780 * 119.99669 * 180.02562 * 17 16 14 20 20 C 1.37097 * 120.00007 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99870 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00222 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99640 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99972 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47317 * 90.00302 * 24 22 20 26 26 H 1.48506 * 109.47007 * 210.00287 * 24 22 20 27 27 H 1.48503 * 109.47242 * 329.99897 * 24 22 20 28 28 C 1.47418 * 125.65140 * 180.02562 * 9 7 5 29 29 H 1.08997 * 109.47204 * 205.68321 * 1 2 3 30 30 H 1.09005 * 109.46924 * 325.69087 * 1 2 3 31 31 H 1.09007 * 109.47076 * 85.68706 * 1 2 3 32 32 H 1.09007 * 117.49878 * 359.97438 * 4 2 1 33 33 H 1.09002 * 117.51985 * 214.97247 * 4 2 1 34 34 H 1.08997 * 109.88475 * 300.51273 * 10 9 7 35 35 H 1.09001 * 109.88067 * 61.52030 * 10 9 7 36 36 H 1.09005 * 110.70140 * 263.79322 * 11 10 9 37 37 H 1.08998 * 110.75319 * 140.51041 * 11 10 9 38 38 H 1.09004 * 109.47457 * 183.95363 * 15 14 12 39 39 H 1.09001 * 109.46615 * 303.95014 * 15 14 12 40 40 H 1.08990 * 109.47358 * 63.94680 * 15 14 12 41 41 H 1.08993 * 109.47164 * 289.99976 * 16 14 12 42 42 H 1.08996 * 109.46920 * 50.00010 * 16 14 12 43 43 H 0.97001 * 120.00106 * 359.97438 * 19 17 16 44 44 H 0.96999 * 119.99752 * 179.97438 * 23 22 20 45 45 H 1.09003 * 110.36709 * 36.99936 * 28 9 7 46 46 H 1.09002 * 110.37153 * 274.67452 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8587 -1.2683 7 6 3.5292 -0.7810 -1.4609 8 8 3.9719 0.3465 -1.4010 9 7 4.1936 -1.7301 -2.1496 10 6 3.7729 -3.1306 -2.3024 11 6 4.8527 -3.8449 -3.1431 12 6 6.1010 -2.9461 -2.9403 13 1 6.6100 -3.1889 -2.0076 14 7 7.0193 -3.0552 -4.0817 15 6 8.0959 -2.0600 -3.9883 16 6 7.5668 -4.4142 -4.1890 17 6 8.3022 -4.5577 -5.4965 18 8 8.3647 -3.6200 -6.2633 19 7 8.8906 -5.7281 -5.8137 20 6 9.5592 -5.8589 -7.0034 21 1 9.6149 -5.0239 -7.6862 22 6 10.1663 -7.0653 -7.3303 23 7 10.0990 -8.0810 -6.4992 24 14 11.0779 -7.2432 -8.9510 25 1 12.5011 -6.8632 -8.7627 26 1 10.9986 -8.6528 -9.4113 27 1 10.4587 -6.3550 -9.9673 28 6 5.4631 -1.5362 -2.8735 29 1 -0.3633 -0.9261 0.4454 30 1 -0.3633 0.8489 0.5793 31 1 -0.3633 0.0773 -1.0248 32 1 1.6111 -1.8583 1.2686 33 1 3.1716 -0.8756 1.2683 34 1 3.6938 -3.6028 -1.3232 35 1 2.8114 -3.1751 -2.8139 36 1 4.5655 -3.8747 -4.1942 37 1 5.0355 -4.8501 -2.7635 38 1 8.7207 -2.1157 -4.8797 39 1 7.6628 -1.0627 -3.9099 40 1 8.7027 -2.2629 -3.1060 41 1 8.2549 -4.5949 -3.3633 42 1 6.7528 -5.1379 -4.1486 43 1 8.8409 -6.4779 -5.2003 44 1 10.5224 -8.9233 -6.7276 45 1 6.1113 -0.8520 -2.3260 46 1 5.2731 -1.1581 -3.8781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191764211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:25 Heat of formation + Delta-G solvation = -34.916079 kcal Electronic energy + Delta-G solvation = -25395.542803 eV Core-core repulsion = 21707.171848 eV Total energy + Delta-G solvation = -3688.370955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.50538 -39.01971 -37.97587 -36.77843 -35.46531 -33.84117 -31.26806 -31.06496 -29.60165 -28.84273 -27.51771 -25.66638 -24.57344 -23.22771 -22.57844 -21.10074 -20.24547 -19.32925 -19.04091 -17.86256 -17.63912 -16.76500 -15.98744 -15.91203 -15.23767 -14.74315 -14.65348 -14.33364 -14.17775 -13.97954 -13.78590 -13.60057 -13.51895 -13.36896 -12.92349 -12.77597 -12.64598 -12.33057 -12.20949 -11.90464 -11.76554 -11.52077 -11.43286 -11.15344 -11.03033 -10.95107 -10.80568 -10.70598 -10.42494 -10.39815 -10.22860 -9.98776 -9.49067 -8.82332 -8.49327 -8.00470 -7.90084 -6.43020 -3.83683 2.28269 2.67542 3.16920 3.25813 3.31712 3.48384 3.88708 3.92331 4.08240 4.22167 4.39782 4.42787 4.50640 4.51391 4.76998 4.91307 4.95406 5.04992 5.13020 5.17981 5.25486 5.27072 5.33992 5.36850 5.39624 5.55898 5.60248 5.64775 5.68018 5.70846 5.79069 5.85898 5.87111 5.94150 5.95587 6.05598 6.13314 6.26610 6.54600 7.17566 7.32613 7.33949 7.54251 7.98554 8.05168 8.60528 9.17104 9.53055 10.04932 10.74703 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.040776 B = 0.002230 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.514539 B =12550.926828 C =12869.947247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.187 4.187 6 H 0.123 0.877 7 C 0.558 3.442 8 O -0.543 6.543 9 N -0.614 5.614 10 C 0.104 3.896 11 C -0.127 4.127 12 C 0.069 3.931 13 H 0.055 0.945 14 N -0.507 5.507 15 C 0.019 3.981 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.116 3.884 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.076 0.924 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 7.544 15.141 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.208 4.208 6 H 0.141 0.859 7 C 0.347 3.653 8 O -0.420 6.420 9 N -0.348 5.348 10 C -0.019 4.019 11 C -0.165 4.165 12 C -0.041 4.041 13 H 0.072 0.928 14 N -0.231 5.231 15 C -0.129 4.129 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.006 4.006 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.359 8.737 14.232 23.378 hybrid contribution 0.973 -1.100 0.274 1.493 sum -15.386 7.637 14.506 22.483 Atomic orbital electron populations 1.21403 0.92142 1.02236 1.02275 1.22394 0.95272 0.95111 1.01355 0.86493 1.23100 1.03141 1.01574 0.90750 1.22268 0.97495 1.05311 0.95738 0.85916 1.19308 0.84461 0.83666 0.77861 1.90700 1.68691 1.20652 1.61961 1.48340 1.24290 1.10569 1.51615 1.22075 0.98554 0.81053 1.00231 1.22763 0.93413 0.98554 1.01799 1.22772 0.93586 0.94769 0.92984 0.92755 1.61630 1.18469 1.04059 1.38940 1.22596 0.93645 0.94482 1.02164 1.21879 0.98815 0.90550 0.97293 1.19699 0.84456 0.84370 0.88523 1.90488 1.64077 1.39317 1.52182 1.41860 1.47312 1.11501 1.19422 1.19696 1.28478 0.98747 0.95841 0.87901 1.25259 0.98157 0.95105 0.99461 1.69611 1.44970 1.03122 1.36645 0.85860 0.79516 0.77416 0.81512 1.20450 1.20943 1.19403 1.22212 0.84223 0.96778 0.97392 0.92318 0.91634 0.91887 0.87722 0.88313 0.91236 0.91092 0.88863 0.89778 0.88215 0.92013 0.96545 0.93405 0.89248 0.77518 0.91893 0.90556 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.19 37.16 0.38 -0.34 16 2 C -0.12 -1.00 5.92 -90.62 -0.54 -1.54 16 3 H 0.12 1.15 7.67 -51.93 -0.40 0.76 16 4 C -0.15 -1.08 9.88 -26.74 -0.26 -1.35 16 5 C -0.19 -1.65 5.26 -91.77 -0.48 -2.14 16 6 H 0.12 0.86 7.73 -51.93 -0.40 0.46 16 7 C 0.56 7.00 7.63 -10.99 -0.08 6.92 16 8 O -0.54 -8.81 16.51 5.56 0.09 -8.72 16 9 N -0.61 -7.12 3.33 -170.50 -0.57 -7.69 16 10 C 0.10 0.91 6.29 -3.03 -0.02 0.89 16 11 C -0.13 -1.30 5.47 -24.88 -0.14 -1.43 16 12 C 0.07 0.86 2.71 -65.58 -0.18 0.68 16 13 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 14 N -0.51 -8.10 4.40 -233.76 -1.03 -9.13 16 15 C 0.02 0.30 9.01 60.07 0.54 0.84 16 16 C 0.05 0.78 5.34 -4.97 -0.03 0.76 16 17 C 0.44 10.19 7.51 -10.98 -0.08 10.11 16 18 O -0.58 -15.19 13.88 5.55 0.08 -15.11 16 19 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 20 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C 0.12 1.50 5.20 -2.54 -0.01 1.49 16 29 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.55 8.05 -51.92 -0.42 0.13 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 38 H 0.10 1.95 5.88 -51.93 -0.31 1.64 16 39 H 0.06 0.89 6.86 -51.93 -0.36 0.53 16 40 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.09 1.34 6.86 -51.93 -0.36 0.99 16 43 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.08 1.03 7.82 -51.93 -0.41 0.63 16 46 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -32.51 374.26 -8.80 -41.31 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.52 Total: 8.34 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.14 Total: 7.04 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.93 Total: -54.34 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.51 -8.80 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191764211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.392 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds