Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55337 * 2 1 4 4 C 1.52999 * 117.50264 * 145.70363 * 2 1 3 5 5 C 1.52994 * 117.50137 * 214.32853 * 2 1 3 6 6 H 1.09000 * 117.49794 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.50063 * 145.02144 * 5 2 1 8 8 O 1.21275 * 120.00075 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00056 * 179.97438 * 7 5 2 10 10 C 1.47485 * 127.03261 * 0.02806 * 9 7 5 11 11 C 1.54006 * 107.08355 * 154.51698 * 10 9 7 12 12 H 1.08996 * 110.32882 * 120.19651 * 11 10 9 13 13 C 1.53006 * 110.32384 * 242.40897 * 11 10 9 14 14 C 1.54612 * 105.04682 * 1.30034 * 11 10 9 15 15 H 1.08994 * 110.73988 * 263.33778 * 14 11 10 16 16 N 1.46895 * 110.73964 * 140.18841 * 14 11 10 17 17 C 1.46897 * 110.99893 * 155.00364 * 16 14 11 18 18 C 1.50703 * 109.47176 * 180.02562 * 17 16 14 19 19 O 1.21293 * 120.00044 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00125 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99759 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00393 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99791 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00114 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99999 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47326 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47138 * 120.00257 * 25 23 21 28 28 H 1.48503 * 109.47392 * 239.99636 * 25 23 21 29 29 C 1.48111 * 127.03653 * 179.70487 * 9 7 5 30 30 H 1.09002 * 109.47153 * 205.67152 * 1 2 3 31 31 H 1.09001 * 109.46832 * 85.67343 * 1 2 3 32 32 H 1.09004 * 109.47261 * 325.67324 * 1 2 3 33 33 H 1.08994 * 117.50345 * 214.98309 * 4 2 1 34 34 H 1.09008 * 117.49719 * 0.02562 * 4 2 1 35 35 H 1.09002 * 109.91142 * 273.87407 * 10 9 7 36 36 H 1.08996 * 109.91817 * 35.15203 * 10 9 7 37 37 H 1.08999 * 109.46830 * 58.54538 * 13 11 10 38 38 H 1.08996 * 109.47385 * 178.54404 * 13 11 10 39 39 H 1.08996 * 109.47466 * 298.54589 * 13 11 10 40 40 H 1.00900 * 110.99884 * 278.95448 * 16 14 11 41 41 H 1.09000 * 109.47442 * 299.99519 * 17 16 14 42 42 H 1.09001 * 109.47664 * 60.00244 * 17 16 14 43 43 H 0.96999 * 119.99916 * 359.97438 * 20 18 17 44 44 H 0.97007 * 120.00467 * 179.97438 * 24 23 21 45 45 H 1.09003 * 110.66134 * 337.77756 * 29 9 7 46 46 H 1.09008 * 110.66150 * 100.88698 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6112 -1.8578 -1.2692 7 6 3.5293 -0.7806 -1.4610 8 8 3.9716 0.3471 -1.4014 9 7 4.1941 -1.7296 -2.1494 10 6 3.8009 -3.1405 -2.3231 11 6 4.4468 -3.6323 -3.6318 12 1 5.1124 -4.4722 -3.4333 13 6 3.3673 -4.0346 -4.6388 14 6 5.2513 -2.4229 -4.1616 15 1 4.6755 -1.8720 -4.9051 16 7 6.5378 -2.8587 -4.7210 17 6 7.0306 -1.8988 -5.7177 18 6 8.3487 -2.3787 -6.2686 19 8 8.8303 -3.4180 -5.8698 20 7 8.9928 -1.6527 -7.2038 21 6 10.1915 -2.0896 -7.7052 22 1 10.6200 -3.0154 -7.3507 23 6 10.8553 -1.3414 -8.6697 24 7 10.3338 -0.2151 -9.1015 25 14 12.4891 -1.9364 -9.3525 26 1 12.8571 -3.2218 -8.7064 27 1 12.3696 -2.1354 -10.8193 28 1 13.5399 -0.9245 -9.0744 29 6 5.4655 -1.5676 -2.8916 30 1 -0.3633 -0.9262 0.4452 31 1 -0.3633 0.0775 -1.0248 32 1 -0.3634 0.8487 0.5795 33 1 3.1715 -0.8755 1.2680 34 1 1.6113 -1.8591 1.2675 35 1 4.1647 -3.7333 -1.4839 36 1 2.7159 -3.2177 -2.3927 37 1 2.7186 -3.1813 -4.8363 38 1 3.8385 -4.3556 -5.5678 39 1 2.7758 -4.8536 -4.2296 40 1 7.2190 -3.0038 -3.9910 41 1 6.3076 -1.8138 -6.5290 42 1 7.1659 -0.9245 -5.2481 43 1 8.6078 -0.8213 -7.5225 44 1 10.7973 0.3075 -9.7745 45 1 5.6263 -0.5223 -3.1555 46 1 6.3028 -1.9514 -2.3086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215326808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = -47.724762 kcal Electronic energy + Delta-G solvation = -25252.228853 eV Core-core repulsion = 21563.302472 eV Total energy + Delta-G solvation = -3688.926381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54673 -38.90200 -38.03307 -36.79309 -34.74258 -33.79609 -32.55247 -31.22630 -29.66730 -28.71589 -26.64375 -26.37448 -24.54486 -23.53271 -22.24352 -21.06981 -20.50300 -19.36052 -19.08754 -17.91247 -17.61527 -16.54744 -16.13884 -15.67319 -15.41726 -14.87036 -14.52885 -14.23668 -14.18990 -14.11306 -13.68689 -13.61230 -13.42453 -13.36557 -13.11647 -12.89450 -12.46218 -12.32964 -12.21538 -12.02513 -11.77598 -11.66378 -11.53264 -11.20029 -11.12454 -11.03024 -10.84582 -10.70302 -10.43320 -10.34556 -10.22874 -9.99245 -9.52718 -8.96486 -8.47671 -8.09838 -7.96806 -6.42114 -3.83048 2.27128 2.64675 3.16229 3.26919 3.34077 3.46593 3.89309 3.98350 4.14104 4.26619 4.38216 4.41182 4.44061 4.61528 4.67021 4.84368 4.94327 5.03224 5.08633 5.16070 5.23824 5.25970 5.30612 5.33068 5.37770 5.39689 5.54418 5.60507 5.62563 5.67536 5.69355 5.74434 5.82554 5.91868 5.95793 5.98624 6.09125 6.17966 6.28782 7.14477 7.32885 7.55027 7.55934 7.96821 8.05630 8.60188 9.17246 9.53505 10.04449 10.75589 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.002315 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.369415 B =12089.636495 C =12600.794141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.187 4.187 6 H 0.123 0.877 7 C 0.560 3.440 8 O -0.542 6.542 9 N -0.614 5.614 10 C 0.105 3.895 11 C -0.097 4.097 12 H 0.097 0.903 13 C -0.139 4.139 14 C 0.080 3.920 15 H 0.091 0.909 16 N -0.652 5.652 17 C 0.048 3.952 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.073 3.927 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.352 0.648 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.084 0.916 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.442 -2.561 15.854 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.208 4.208 6 H 0.141 0.859 7 C 0.349 3.651 8 O -0.419 6.419 9 N -0.348 5.348 10 C -0.019 4.019 11 C -0.117 4.117 12 H 0.115 0.885 13 C -0.196 4.196 14 C -0.032 4.032 15 H 0.109 0.891 16 N -0.283 5.283 17 C -0.084 4.084 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.051 4.051 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.173 0.827 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.114 -2.875 15.579 25.604 hybrid contribution 0.935 0.947 -0.155 1.340 sum -19.179 -1.928 15.423 24.687 Atomic orbital electron populations 1.21402 0.92123 1.02243 1.02275 1.22400 0.95284 0.95131 1.01319 0.86481 1.23103 1.03155 1.01557 0.90726 1.22256 0.97487 1.05340 0.95739 0.85935 1.19314 0.84311 0.83553 0.77875 1.90710 1.68831 1.20640 1.61758 1.48594 1.24134 1.10560 1.51535 1.22317 1.00190 0.81316 0.98051 1.22106 0.97325 0.98711 0.93512 0.88489 1.21790 0.97569 1.00829 0.99449 1.22745 0.92471 0.93900 0.94062 0.89084 1.60177 1.04211 1.45983 1.17959 1.21753 0.97061 0.93568 0.96059 1.19767 0.86876 0.86638 0.84112 1.90524 1.68672 1.25002 1.62611 1.41872 1.20244 1.22454 1.35385 1.19751 0.96420 1.07649 1.19028 0.87834 1.25278 0.99982 0.95636 0.97124 1.69621 1.39795 1.13921 1.30883 0.85795 0.81147 0.78844 0.78520 1.19204 1.20739 1.20773 1.23312 0.86230 1.02436 0.93136 0.92331 0.91888 0.91606 0.88298 0.87721 0.91278 0.90626 0.92964 0.91369 0.92620 0.82743 0.89453 0.93635 0.77436 0.91897 0.89756 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.19 37.16 0.38 -0.34 16 2 C -0.12 -1.00 5.92 -90.62 -0.54 -1.54 16 3 H 0.12 1.17 7.67 -51.93 -0.40 0.77 16 4 C -0.15 -1.08 9.88 -26.73 -0.26 -1.34 16 5 C -0.19 -1.64 5.31 -91.77 -0.49 -2.13 16 6 H 0.12 0.84 7.14 -51.93 -0.37 0.47 16 7 C 0.56 7.00 7.68 -10.98 -0.08 6.91 16 8 O -0.54 -8.91 16.47 5.56 0.09 -8.82 16 9 N -0.61 -6.88 3.29 -169.98 -0.56 -7.44 16 10 C 0.10 0.88 6.42 -2.98 -0.02 0.86 16 11 C -0.10 -0.93 3.34 -89.24 -0.30 -1.23 16 12 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 13 C -0.14 -1.21 8.89 37.16 0.33 -0.88 16 14 C 0.08 0.96 2.93 -66.03 -0.19 0.76 16 15 H 0.09 1.11 7.54 -51.93 -0.39 0.72 16 16 N -0.65 -9.91 5.95 -106.22 -0.63 -10.54 16 17 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 18 C 0.44 10.29 7.82 -10.98 -0.09 10.21 16 19 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 20 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.07 0.89 6.65 -2.32 -0.02 0.88 16 30 H 0.06 0.28 7.90 -51.93 -0.41 -0.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.54 8.05 -51.92 -0.42 0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.51 6.60 -51.93 -0.34 0.16 16 37 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.35 5.53 7.91 -39.29 -0.31 5.22 16 41 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.08 1.16 7.85 -51.93 -0.41 0.75 16 46 H 0.07 0.89 7.77 -51.92 -0.40 0.49 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -33.05 379.96 -8.69 -41.74 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.50 Total: 12.11 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.55 Total: 4.94 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.53 Total: -56.22 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.18 Total: -24.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.05 -8.69 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215326808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.985 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds