Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55337 * 2 1 4 4 C 1.52999 * 117.50264 * 145.70363 * 2 1 3 5 5 C 1.52994 * 117.50137 * 214.32853 * 2 1 3 6 6 H 1.09000 * 117.49794 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.50063 * 145.02144 * 5 2 1 8 8 O 1.21275 * 120.00075 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00056 * 179.97438 * 7 5 2 10 10 C 1.47485 * 127.03261 * 0.02806 * 9 7 5 11 11 C 1.54006 * 107.08355 * 154.51698 * 10 9 7 12 12 H 1.08996 * 110.32882 * 120.19651 * 11 10 9 13 13 C 1.53006 * 110.32384 * 242.40897 * 11 10 9 14 14 C 1.54612 * 105.04682 * 1.30034 * 11 10 9 15 15 H 1.08994 * 110.73988 * 263.33778 * 14 11 10 16 16 N 1.46895 * 110.73964 * 140.18841 * 14 11 10 17 17 C 1.46897 * 110.99893 * 155.00364 * 16 14 11 18 18 C 1.50703 * 109.47176 * 180.02562 * 17 16 14 19 19 O 1.21293 * 120.00044 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00125 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99759 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00393 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99791 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00114 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99999 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47326 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47138 * 120.00257 * 25 23 21 28 28 H 1.48503 * 109.47392 * 239.99636 * 25 23 21 29 29 C 1.48111 * 127.03653 * 179.70487 * 9 7 5 30 30 H 1.09002 * 109.47153 * 205.67152 * 1 2 3 31 31 H 1.09001 * 109.46832 * 85.67343 * 1 2 3 32 32 H 1.09004 * 109.47261 * 325.67324 * 1 2 3 33 33 H 1.08994 * 117.50345 * 214.98309 * 4 2 1 34 34 H 1.09008 * 117.49719 * 0.02562 * 4 2 1 35 35 H 1.09002 * 109.91142 * 273.87407 * 10 9 7 36 36 H 1.08996 * 109.91817 * 35.15203 * 10 9 7 37 37 H 1.08999 * 109.46830 * 58.54538 * 13 11 10 38 38 H 1.08996 * 109.47385 * 178.54404 * 13 11 10 39 39 H 1.08996 * 109.47466 * 298.54589 * 13 11 10 40 40 H 1.00900 * 110.99884 * 278.95448 * 16 14 11 41 41 H 1.09000 * 109.47442 * 299.99519 * 17 16 14 42 42 H 1.09001 * 109.47664 * 60.00244 * 17 16 14 43 43 H 0.96999 * 119.99916 * 359.97438 * 20 18 17 44 44 H 0.97007 * 120.00467 * 179.97438 * 24 23 21 45 45 H 1.09003 * 110.66134 * 337.77756 * 29 9 7 46 46 H 1.09008 * 110.66150 * 100.88698 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6112 -1.8578 -1.2692 7 6 3.5293 -0.7806 -1.4610 8 8 3.9716 0.3471 -1.4014 9 7 4.1941 -1.7296 -2.1494 10 6 3.8009 -3.1405 -2.3231 11 6 4.4468 -3.6323 -3.6318 12 1 5.1124 -4.4722 -3.4333 13 6 3.3673 -4.0346 -4.6388 14 6 5.2513 -2.4229 -4.1616 15 1 4.6755 -1.8720 -4.9051 16 7 6.5378 -2.8587 -4.7210 17 6 7.0306 -1.8988 -5.7177 18 6 8.3487 -2.3787 -6.2686 19 8 8.8303 -3.4180 -5.8698 20 7 8.9928 -1.6527 -7.2038 21 6 10.1915 -2.0896 -7.7052 22 1 10.6200 -3.0154 -7.3507 23 6 10.8553 -1.3414 -8.6697 24 7 10.3338 -0.2151 -9.1015 25 14 12.4891 -1.9364 -9.3525 26 1 12.8571 -3.2218 -8.7064 27 1 12.3696 -2.1354 -10.8193 28 1 13.5399 -0.9245 -9.0744 29 6 5.4655 -1.5676 -2.8916 30 1 -0.3633 -0.9262 0.4452 31 1 -0.3633 0.0775 -1.0248 32 1 -0.3634 0.8487 0.5795 33 1 3.1715 -0.8755 1.2680 34 1 1.6113 -1.8591 1.2675 35 1 4.1647 -3.7333 -1.4839 36 1 2.7159 -3.2177 -2.3927 37 1 2.7186 -3.1813 -4.8363 38 1 3.8385 -4.3556 -5.5678 39 1 2.7758 -4.8536 -4.2296 40 1 7.2190 -3.0038 -3.9910 41 1 6.3076 -1.8138 -6.5290 42 1 7.1659 -0.9245 -5.2481 43 1 8.6078 -0.8213 -7.5225 44 1 10.7973 0.3075 -9.7745 45 1 5.6263 -0.5223 -3.1555 46 1 6.3028 -1.9514 -2.3086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215326808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = -71.138577 kcal Electronic energy + Delta-G solvation = -25253.244152 eV Core-core repulsion = 21563.302472 eV Total energy + Delta-G solvation = -3689.941680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45462 -40.25236 -39.44093 -37.60362 -36.23203 -35.55916 -33.48172 -33.23891 -30.60052 -29.47074 -27.89083 -27.36316 -26.07369 -24.61173 -23.13036 -21.66966 -21.53923 -20.97349 -20.05084 -19.88382 -18.50525 -17.82400 -17.31905 -17.00169 -16.65622 -16.37980 -15.95768 -15.66380 -15.36289 -14.99232 -14.79478 -14.58799 -14.50742 -14.10735 -14.04188 -13.91321 -13.68523 -13.51628 -13.35748 -13.07349 -13.00545 -12.86260 -12.79632 -12.42040 -12.33235 -12.12310 -12.02817 -11.93642 -11.69584 -11.52859 -11.34268 -11.06820 -10.88307 -10.37023 -10.03665 -9.89969 -9.34513 -8.48186 -5.97164 1.35753 1.38251 1.41123 1.55555 1.77791 2.02604 2.27926 2.81156 2.85613 3.18799 3.31058 3.47245 3.62541 3.75260 3.76677 3.85361 3.88417 4.12251 4.20465 4.21219 4.30833 4.39359 4.41391 4.50227 4.53793 4.66475 4.72032 4.73830 4.81379 4.84438 4.90752 4.95033 4.98045 5.06452 5.17544 5.21666 5.32278 5.39922 5.41954 5.45837 5.86403 6.05745 6.29885 6.45494 6.57491 7.03636 7.10635 7.53846 8.08389 8.69430 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.002315 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.369415 B =12089.636495 C =12600.794141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.131 4.131 3 H 0.088 0.912 4 C -0.133 4.133 5 C -0.190 4.190 6 H 0.151 0.849 7 C 0.551 3.449 8 O -0.595 6.595 9 N -0.613 5.613 10 C 0.107 3.893 11 C -0.091 4.091 12 H 0.093 0.907 13 C -0.135 4.135 14 C 0.085 3.915 15 H 0.091 0.909 16 N -0.658 5.658 17 C 0.063 3.937 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.074 3.926 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.348 0.652 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.062 0.938 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.395 -3.747 16.497 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.150 4.150 3 H 0.106 0.894 4 C -0.171 4.171 5 C -0.210 4.210 6 H 0.169 0.831 7 C 0.342 3.658 8 O -0.476 6.476 9 N -0.346 5.346 10 C -0.015 4.015 11 C -0.111 4.111 12 H 0.112 0.888 13 C -0.192 4.192 14 C -0.027 4.027 15 H 0.109 0.891 16 N -0.289 5.289 17 C -0.070 4.070 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.052 4.052 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.154 0.846 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.168 0.832 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.103 -4.075 16.219 27.716 hybrid contribution 1.534 1.320 -0.316 2.048 sum -20.569 -2.755 15.903 26.145 Atomic orbital electron populations 1.21394 0.89992 1.03475 1.02597 1.22431 0.96811 0.93995 1.01792 0.89361 1.23204 1.02795 1.01466 0.89611 1.22313 0.95821 1.06366 0.96518 0.83135 1.20068 0.85280 0.82913 0.77566 1.90682 1.70372 1.22846 1.63684 1.48691 1.23434 1.11717 1.50710 1.22490 1.01820 0.79448 0.97717 1.22080 0.97274 0.97354 0.94378 0.88849 1.21764 0.97295 1.01820 0.98352 1.22767 0.91001 0.95184 0.93705 0.89099 1.60222 1.05208 1.45663 1.17831 1.21601 0.93897 0.94347 0.97122 1.20780 0.88187 0.85633 0.82723 1.90491 1.70117 1.26609 1.63478 1.41952 1.20063 1.22890 1.36179 1.19715 0.98112 1.07699 1.20665 0.90140 1.26083 1.03064 0.95579 0.96774 1.69684 1.41014 1.14448 1.31072 0.84847 0.77053 0.78220 0.78066 1.19639 1.19570 1.19699 1.23186 0.87183 1.01149 0.93637 0.90394 0.91880 0.91223 0.89736 0.84568 0.89634 0.87870 0.92470 0.93194 0.90293 0.83225 0.87698 0.92084 0.77049 0.91307 0.91944 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.19 71.98 0.73 -0.35 16 2 C -0.13 -1.99 5.92 -10.80 -0.06 -2.05 16 3 H 0.09 1.85 7.67 -2.38 -0.02 1.83 16 4 C -0.13 -1.65 9.88 30.59 0.30 -1.34 16 5 C -0.19 -2.92 5.31 -11.54 -0.06 -2.98 16 6 H 0.15 1.44 7.14 -2.39 -0.02 1.42 16 7 C 0.55 13.47 7.68 87.66 0.67 14.14 16 8 O -0.59 -20.30 16.47 -3.01 -0.05 -20.35 16 9 N -0.61 -12.99 3.29 -810.08 -2.67 -15.66 16 10 C 0.11 1.47 6.42 86.53 0.56 2.03 16 11 C -0.09 -1.56 3.34 -9.90 -0.03 -1.59 16 12 H 0.09 1.72 8.05 -2.39 -0.02 1.70 16 13 C -0.13 -2.00 8.89 71.98 0.64 -1.36 16 14 C 0.08 1.94 2.93 46.01 0.13 2.08 16 15 H 0.09 2.11 7.54 -2.39 -0.02 2.09 16 16 N -0.66 -19.80 5.95 -489.96 -2.91 -22.72 16 17 C 0.06 2.15 6.03 85.56 0.52 2.67 16 18 C 0.44 20.92 7.82 87.66 0.69 21.60 16 19 O -0.62 -34.12 15.78 -3.07 -0.05 -34.17 16 20 N -0.57 -29.75 5.29 -306.98 -1.62 -31.37 16 21 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 24 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 25 Si 0.99 43.30 29.55 68.60 2.03 45.32 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 C 0.07 1.79 6.65 86.61 0.58 2.36 16 30 H 0.08 0.43 7.90 -2.39 -0.02 0.41 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.14 0.84 8.05 -2.38 -0.02 0.82 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 0.91 6.60 -2.39 -0.02 0.89 16 37 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.35 11.00 7.91 -89.69 -0.71 10.29 16 41 H 0.10 3.27 8.08 -2.39 -0.02 3.25 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.40 19.62 7.90 -92.71 -0.73 18.88 16 44 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 45 H 0.06 1.78 7.85 -2.39 -0.02 1.76 16 46 H 0.07 1.80 7.77 -2.38 -0.02 1.79 16 Total: -1.00 -74.08 379.96 0.49 -73.59 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.45 Total: 38.79 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 5.94 Total: 16.63 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -6.92 Total: -119.82 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -0.10 Total: -54.52 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -74.08 0.49 -73.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215326808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.452 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds