Wall clock time and date at job start Tue Mar 31 2020 04:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 N 1.46496 * 109.47172 * 120.00506 * 2 1 3 5 5 C 1.34767 * 120.00144 * 84.99813 * 4 2 1 6 6 O 1.21588 * 120.00453 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00078 * 179.97438 * 5 4 2 8 8 C 1.47851 * 134.33834 * 179.97438 * 7 5 4 9 9 C 1.52677 * 85.64603 * 203.65282 * 8 7 5 10 10 C 1.52226 * 122.20463 * 104.35344 * 9 8 7 11 11 N 1.47319 * 87.60564 * 99.87428 * 10 9 8 12 12 C 1.34777 * 135.86836 * 205.94740 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72709 * 12 11 10 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00078 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46986 * 89.99876 * 20 18 16 22 22 H 1.48492 * 109.47096 * 210.00138 * 20 18 16 23 23 H 1.48506 * 109.46749 * 330.00135 * 20 18 16 24 24 C 1.47313 * 88.25850 * 26.20896 * 11 10 9 25 25 C 1.47847 * 134.33380 * 0.02562 * 7 5 4 26 26 H 1.09004 * 109.46784 * 299.99998 * 1 2 3 27 27 H 1.09001 * 109.47283 * 59.99268 * 1 2 3 28 28 H 1.08992 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46662 * 240.00540 * 2 1 3 30 30 H 1.09003 * 109.46491 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47219 * 299.99948 * 3 2 1 32 32 H 1.08993 * 109.47002 * 60.00633 * 3 2 1 33 33 H 0.96998 * 119.99272 * 264.99384 * 4 2 1 34 34 H 1.09000 * 113.84227 * 89.46946 * 8 7 5 35 35 H 1.08999 * 113.84180 * 317.83363 * 8 7 5 36 36 H 1.08994 * 113.53262 * 345.19312 * 10 9 8 37 37 H 1.09004 * 113.53035 * 214.55340 * 10 9 8 38 38 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 39 39 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 40 40 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 41 41 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 42 42 H 0.97008 * 119.99515 * 180.02562 * 19 18 16 43 43 H 1.09006 * 113.52951 * 88.47172 * 24 11 10 44 44 H 1.08991 * 113.53102 * 219.10906 * 24 11 10 45 45 H 1.08998 * 113.84951 * 42.16135 * 25 7 5 46 46 H 1.09003 * 113.84288 * 270.52310 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1470 -2.0322 1.1942 6 8 1.8583 -2.6693 0.1997 7 7 2.5968 -2.6676 2.2944 8 6 2.8540 -4.0824 2.6380 9 6 2.6739 -3.6417 4.0887 10 6 1.4092 -3.9482 4.8786 11 7 2.1417 -5.0656 5.4992 12 6 1.8117 -6.2460 6.0598 13 8 0.6481 -6.5815 6.1264 14 6 2.8891 -7.1520 6.5977 15 6 2.2510 -8.4199 7.1690 16 6 3.3283 -9.3257 7.7075 17 1 4.3645 -9.0271 7.6478 18 6 2.9911 -10.5355 8.2764 19 7 1.7293 -10.8992 8.3485 20 14 4.3265 -11.6586 8.9433 21 1 4.5750 -11.3382 10.3718 22 1 3.8903 -13.0728 8.8217 23 1 5.5760 -11.4575 8.1662 24 6 3.3914 -4.3278 5.2463 25 6 3.0283 -2.2270 3.6381 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.2491 -0.1824 1.9893 34 1 3.8641 -4.4167 2.4012 35 1 2.0831 -4.7683 2.2868 36 1 0.5739 -4.2681 4.2557 37 1 1.1351 -3.1629 5.5831 38 1 3.5733 -7.4207 5.7928 39 1 3.4387 -6.6357 7.3847 40 1 1.5667 -8.1513 7.9738 41 1 1.7013 -8.9363 6.3821 42 1 1.4921 -11.7503 8.7491 43 1 3.6659 -3.6475 6.0525 44 1 4.2172 -4.9657 4.9315 45 1 2.3945 -1.4543 4.0732 46 1 4.0915 -1.9964 3.7059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271256629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:42 Heat of formation + Delta-G solvation = 3.073240 kcal Electronic energy + Delta-G solvation = -25090.551252 eV Core-core repulsion = 21403.827638 eV Total energy + Delta-G solvation = -3686.723614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52517 -39.81843 -38.36536 -36.51637 -35.83079 -33.46005 -32.00744 -31.09874 -29.49395 -27.62676 -27.04584 -26.71740 -26.22401 -25.02491 -21.89155 -21.36193 -20.56828 -19.03065 -18.59651 -18.10739 -16.95931 -16.80647 -16.43842 -15.94240 -15.76500 -15.22893 -14.92103 -14.77763 -14.42657 -14.33338 -14.15374 -13.68096 -13.29163 -12.98712 -12.75150 -12.72138 -12.66831 -12.54433 -12.22069 -12.14226 -12.07185 -11.79238 -11.36230 -11.19544 -11.11512 -10.93418 -10.82729 -10.60283 -10.31906 -9.97102 -9.67608 -9.49000 -9.21286 -9.05736 -8.90605 -8.53820 -8.32172 -5.96371 -4.01027 2.11446 2.95798 2.96323 3.16319 3.33100 3.39293 3.41858 3.46070 3.93228 3.98176 4.34819 4.44592 4.46713 4.64829 4.82692 4.90487 4.93670 4.96534 5.12562 5.15371 5.19906 5.27762 5.30287 5.33715 5.37709 5.38531 5.41214 5.51494 5.54106 5.60886 5.69258 5.71865 5.90411 6.02820 6.21205 6.24598 6.28195 6.84854 6.87925 7.73308 7.73568 7.84820 7.96143 8.06560 8.35097 8.37205 8.69799 9.07181 9.62514 11.14547 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.002111 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.487667 B =13261.331317 C =13391.112696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 C -0.160 4.160 4 N -0.741 5.741 5 C 0.729 3.271 6 O -0.588 6.588 7 N -0.663 5.663 8 C 0.161 3.839 9 C -0.141 4.141 10 C 0.130 3.870 11 N -0.655 5.655 12 C 0.541 3.459 13 O -0.529 6.529 14 C -0.121 4.121 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.121 3.879 25 C 0.122 3.878 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.394 0.606 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 28.067 -13.112 31.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 C -0.217 4.217 4 N -0.396 5.396 5 C 0.432 3.568 6 O -0.466 6.466 7 N -0.403 5.403 8 C 0.038 3.962 9 C -0.143 4.143 10 C 0.007 3.993 11 N -0.394 5.394 12 C 0.333 3.667 13 O -0.403 6.403 14 C -0.161 4.161 15 C -0.002 4.002 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.003 4.003 25 C -0.002 4.002 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.227 0.773 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.572 27.109 -13.857 30.655 hybrid contribution 0.826 -0.262 0.873 1.230 sum 4.398 26.847 -12.985 30.145 Atomic orbital electron populations 1.22219 0.95411 1.02834 1.01901 1.20804 0.93997 0.92261 0.88008 1.22077 1.01688 0.95034 1.02940 1.45193 1.72002 1.05136 1.17288 1.15401 0.78086 0.81667 0.81666 1.90942 1.57641 1.65726 1.32246 1.49125 1.68946 1.09794 1.12421 1.22604 1.02223 0.82750 0.88593 1.23191 0.99873 0.96251 0.94936 1.22423 0.94744 0.88583 0.93561 1.49946 1.09878 1.17377 1.62216 1.21301 0.91284 0.79019 0.75116 1.90697 1.21134 1.72866 1.55647 1.21827 0.96197 0.97499 1.00533 1.18929 0.95752 0.88939 0.96547 1.21199 0.93127 1.02885 1.39335 0.92577 1.25032 0.95341 0.97970 0.96070 1.70002 1.16212 1.22088 1.44462 0.86579 0.81973 0.80048 0.79266 1.20684 1.21213 1.19880 1.22699 0.89695 0.93385 0.94503 1.22902 1.00632 0.96282 0.80367 0.92593 0.91681 0.91915 0.89448 0.92005 0.90801 0.92096 0.77278 0.88943 0.89426 0.90331 0.89680 0.90230 0.90295 0.95833 0.95760 0.92927 0.89182 0.89572 0.89804 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.15 1.09 3.18 -67.93 -0.22 0.88 16 3 C -0.16 -0.66 9.38 37.16 0.35 -0.31 16 4 N -0.74 -5.72 5.08 -58.68 -0.30 -6.02 16 5 C 0.73 8.34 8.72 -86.93 -0.76 7.58 16 6 O -0.59 -9.42 16.73 5.29 0.09 -9.33 16 7 N -0.66 -6.08 3.61 -191.36 -0.69 -6.77 16 8 C 0.16 1.51 8.67 -3.47 -0.03 1.48 16 9 C -0.14 -1.11 1.47 -155.82 -0.23 -1.34 16 10 C 0.13 1.41 8.43 -7.52 -0.06 1.35 16 11 N -0.66 -9.17 3.69 -184.96 -0.68 -9.86 16 12 C 0.54 10.63 8.08 -10.98 -0.09 10.54 16 13 O -0.53 -12.92 16.75 5.55 0.09 -12.82 16 14 C -0.12 -2.46 5.46 -27.88 -0.15 -2.61 16 15 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 16 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.12 1.04 8.26 -7.38 -0.06 0.98 16 25 C 0.12 0.64 8.26 -3.48 -0.03 0.61 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.80 7.58 -51.93 -0.39 0.40 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.39 1.99 8.20 -40.82 -0.33 1.66 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -38.55 386.54 -9.28 -47.83 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.88 Total: -4.22 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.46 Total: 5.51 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.94 Total: -49.41 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.18 Total: -22.15 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.55 -9.28 -47.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271256629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.904 kcal (2) G-P(sol) polarization free energy of solvation -38.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds