Wall clock time and date at job start Tue Mar 31 2020 04:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 N 1.46496 * 109.47172 * 120.00506 * 2 1 3 5 5 C 1.34767 * 120.00144 * 84.99813 * 4 2 1 6 6 O 1.21588 * 120.00453 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00078 * 179.97438 * 5 4 2 8 8 C 1.47851 * 134.33834 * 179.97438 * 7 5 4 9 9 C 1.52677 * 85.64603 * 203.65282 * 8 7 5 10 10 C 1.52226 * 122.20463 * 104.35344 * 9 8 7 11 11 N 1.47319 * 87.60564 * 99.87428 * 10 9 8 12 12 C 1.34777 * 135.86836 * 205.94740 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72709 * 12 11 10 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00078 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46986 * 89.99876 * 20 18 16 22 22 H 1.48492 * 109.47096 * 210.00138 * 20 18 16 23 23 H 1.48506 * 109.46749 * 330.00135 * 20 18 16 24 24 C 1.47313 * 88.25850 * 26.20896 * 11 10 9 25 25 C 1.47847 * 134.33380 * 0.02562 * 7 5 4 26 26 H 1.09004 * 109.46784 * 299.99998 * 1 2 3 27 27 H 1.09001 * 109.47283 * 59.99268 * 1 2 3 28 28 H 1.08992 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46662 * 240.00540 * 2 1 3 30 30 H 1.09003 * 109.46491 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47219 * 299.99948 * 3 2 1 32 32 H 1.08993 * 109.47002 * 60.00633 * 3 2 1 33 33 H 0.96998 * 119.99272 * 264.99384 * 4 2 1 34 34 H 1.09000 * 113.84227 * 89.46946 * 8 7 5 35 35 H 1.08999 * 113.84180 * 317.83363 * 8 7 5 36 36 H 1.08994 * 113.53262 * 345.19312 * 10 9 8 37 37 H 1.09004 * 113.53035 * 214.55340 * 10 9 8 38 38 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 39 39 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 40 40 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 41 41 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 42 42 H 0.97008 * 119.99515 * 180.02562 * 19 18 16 43 43 H 1.09006 * 113.52951 * 88.47172 * 24 11 10 44 44 H 1.08991 * 113.53102 * 219.10906 * 24 11 10 45 45 H 1.08998 * 113.84951 * 42.16135 * 25 7 5 46 46 H 1.09003 * 113.84288 * 270.52310 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1470 -2.0322 1.1942 6 8 1.8583 -2.6693 0.1997 7 7 2.5968 -2.6676 2.2944 8 6 2.8540 -4.0824 2.6380 9 6 2.6739 -3.6417 4.0887 10 6 1.4092 -3.9482 4.8786 11 7 2.1417 -5.0656 5.4992 12 6 1.8117 -6.2460 6.0598 13 8 0.6481 -6.5815 6.1264 14 6 2.8891 -7.1520 6.5977 15 6 2.2510 -8.4199 7.1690 16 6 3.3283 -9.3257 7.7075 17 1 4.3645 -9.0271 7.6478 18 6 2.9911 -10.5355 8.2764 19 7 1.7293 -10.8992 8.3485 20 14 4.3265 -11.6586 8.9433 21 1 4.5750 -11.3382 10.3718 22 1 3.8903 -13.0728 8.8217 23 1 5.5760 -11.4575 8.1662 24 6 3.3914 -4.3278 5.2463 25 6 3.0283 -2.2270 3.6381 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.2491 -0.1824 1.9893 34 1 3.8641 -4.4167 2.4012 35 1 2.0831 -4.7683 2.2868 36 1 0.5739 -4.2681 4.2557 37 1 1.1351 -3.1629 5.5831 38 1 3.5733 -7.4207 5.7928 39 1 3.4387 -6.6357 7.3847 40 1 1.5667 -8.1513 7.9738 41 1 1.7013 -8.9363 6.3821 42 1 1.4921 -11.7503 8.7491 43 1 3.6659 -3.6475 6.0525 44 1 4.2172 -4.9657 4.9315 45 1 2.3945 -1.4543 4.0732 46 1 4.0915 -1.9964 3.7059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271256629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:41 Heat of formation + Delta-G solvation = -25.964665 kcal Electronic energy + Delta-G solvation = -25091.810430 eV Core-core repulsion = 21403.827638 eV Total energy + Delta-G solvation = -3687.982792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.35025 -40.77520 -39.65484 -37.39663 -36.70779 -35.56901 -33.10867 -32.66683 -30.58712 -28.34404 -28.08252 -27.34405 -27.02865 -26.69709 -23.39009 -22.35545 -21.41653 -20.25414 -19.36292 -18.84022 -18.74415 -17.69203 -17.52465 -17.15189 -16.89668 -16.52720 -16.29416 -15.82217 -15.62889 -15.48656 -14.97490 -14.45010 -14.38707 -14.07249 -13.94908 -13.77110 -13.55194 -13.38199 -13.19030 -13.08821 -13.06211 -12.98008 -12.80661 -12.46787 -12.29598 -11.94380 -11.92273 -11.82762 -11.70876 -11.62247 -11.31573 -11.26279 -10.68668 -10.57177 -10.27415 -9.76251 -9.50992 -8.17936 -6.32508 1.42480 1.42790 1.45782 1.56639 1.67425 1.85680 2.12522 2.43330 2.86454 3.15041 3.18513 3.26307 3.62700 3.80644 3.95317 4.16475 4.30953 4.33407 4.39261 4.41574 4.50852 4.52615 4.55895 4.59249 4.61703 4.68436 4.70611 4.75828 4.77055 4.89622 4.95168 4.97448 5.00856 5.05730 5.16041 5.27338 5.33965 5.49283 5.61210 5.61876 5.84273 6.16450 6.22036 6.70965 6.87056 7.04052 7.23454 7.38083 7.57074 8.94874 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.002111 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.487667 B =13261.331317 C =13391.112696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 C -0.149 4.149 4 N -0.724 5.724 5 C 0.719 3.281 6 O -0.646 6.646 7 N -0.668 5.668 8 C 0.148 3.852 9 C -0.121 4.121 10 C 0.121 3.879 11 N -0.658 5.658 12 C 0.536 3.464 13 O -0.598 6.598 14 C -0.107 4.107 15 C 0.041 3.959 16 C -0.541 4.541 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.939 5.939 20 Si 0.977 3.023 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.254 1.254 24 C 0.125 3.875 25 C 0.140 3.860 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.112 0.888 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.106 0.894 40 H -0.019 1.019 41 H -0.022 1.022 42 H 0.262 0.738 43 H 0.131 0.869 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 31.333 -12.222 34.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.206 4.206 4 N -0.380 5.380 5 C 0.422 3.578 6 O -0.529 6.529 7 N -0.407 5.407 8 C 0.025 3.975 9 C -0.123 4.123 10 C -0.001 4.001 11 N -0.394 5.394 12 C 0.328 3.672 13 O -0.479 6.479 14 C -0.146 4.146 15 C 0.003 3.997 16 C -0.579 4.579 17 H 0.097 0.903 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.177 1.177 24 C 0.003 3.997 25 C 0.019 3.981 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.247 0.753 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.124 0.876 40 H -0.001 1.001 41 H -0.003 1.003 42 H 0.071 0.929 43 H 0.149 0.851 44 H 0.119 0.881 45 H 0.129 0.871 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.385 30.495 -12.953 33.945 hybrid contribution -0.387 -1.196 0.527 1.363 sum 6.998 29.298 -12.426 32.585 Atomic orbital electron populations 1.22180 0.95587 1.00845 1.03304 1.20891 0.93883 0.93849 0.86872 1.22005 1.01855 0.92523 1.04241 1.45066 1.70973 1.03875 1.18128 1.15703 0.78049 0.82575 0.81499 1.90898 1.60069 1.67169 1.34716 1.49183 1.68409 1.09865 1.13255 1.22731 1.02134 0.82764 0.89896 1.22873 0.97507 0.98440 0.93436 1.22754 0.95273 0.87864 0.94203 1.49852 1.13604 1.16366 1.59554 1.21007 0.89916 0.80780 0.75468 1.90663 1.23385 1.74944 1.58874 1.21539 0.96281 0.95011 1.01813 1.18712 0.94998 0.91963 0.94014 1.21705 0.94214 1.03188 1.38818 0.90295 1.26189 0.97984 1.00134 0.96370 1.70196 1.19157 1.22796 1.45767 0.85280 0.78845 0.76955 0.78906 1.19554 1.21381 1.17724 1.23146 0.87821 0.93186 0.95506 1.23181 1.03296 0.94647 0.76998 0.91230 0.90249 0.95499 0.92155 0.91607 0.89816 0.90463 0.75281 0.87022 0.93027 0.93333 0.86699 0.88009 0.87570 1.00064 1.00348 0.92894 0.85141 0.88056 0.87056 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 71.98 0.68 -1.55 16 2 C 0.15 2.00 3.18 44.99 0.14 2.14 16 3 C -0.15 -0.82 9.38 71.98 0.68 -0.15 16 4 N -0.72 -9.99 5.08 -457.82 -2.33 -12.31 16 5 C 0.72 16.16 8.72 179.06 1.56 17.72 16 6 O -0.65 -21.83 16.73 -3.99 -0.07 -21.89 16 7 N -0.67 -11.02 3.61 -877.60 -3.17 -14.19 16 8 C 0.15 2.63 8.67 86.01 0.75 3.38 16 9 C -0.12 -1.53 1.47 -52.72 -0.08 -1.60 16 10 C 0.12 2.47 8.43 83.68 0.71 3.17 16 11 N -0.66 -17.56 3.69 -857.48 -3.17 -20.72 16 12 C 0.54 21.57 8.08 87.66 0.71 22.28 16 13 O -0.60 -31.29 16.75 -3.04 -0.05 -31.34 16 14 C -0.11 -4.33 5.46 29.85 0.16 -4.17 16 15 C 0.04 2.31 4.26 29.85 0.13 2.44 16 16 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 17 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 18 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 19 N -0.94 -60.36 13.29 21.45 0.28 -60.07 16 20 Si 0.98 44.34 29.54 68.60 2.03 46.37 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 24 C 0.13 1.60 8.26 83.77 0.69 2.29 16 25 C 0.14 0.79 8.26 86.00 0.71 1.50 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 1.14 7.58 -2.39 -0.02 1.13 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.41 2.72 8.20 -92.71 -0.76 1.96 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 39 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 40 H -0.02 -1.23 8.10 -2.39 -0.02 -1.24 16 41 H -0.02 -1.42 8.10 -2.39 -0.02 -1.44 16 42 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 43 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 45 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -94.67 386.54 1.26 -93.41 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.20 Total: 4.10 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 7.53 Total: 16.65 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -8.38 Total: -107.30 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.12 Total: -53.23 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -94.67 1.26 -93.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271256629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.443 kcal (2) G-P(sol) polarization free energy of solvation -94.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds