Wall clock time and date at job start Tue Mar 31 2020 03:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 H 1.08994 * 109.47908 * 56.46435 * 3 2 1 5 5 C 1.50701 * 109.47326 * 176.46432 * 3 2 1 6 6 N 1.34777 * 120.00121 * 299.99974 * 5 3 2 7 7 O 1.21283 * 120.00269 * 119.99234 * 5 3 2 8 8 N 1.46504 * 109.46780 * 296.46144 * 3 2 1 9 9 C 1.33343 * 117.29135 * 302.87631 * 8 3 2 10 10 O 1.21285 * 118.80307 * 359.76430 * 9 8 3 11 11 C 1.50349 * 122.40187 * 179.73554 * 9 8 3 12 12 C 1.52888 * 109.30663 * 338.37055 * 11 9 8 13 13 C 1.53118 * 109.33557 * 52.84584 * 12 11 9 14 14 H 1.08999 * 111.25506 * 60.12765 * 13 12 11 15 15 C 1.44635 * 117.28526 * 122.61906 * 8 3 2 16 16 H 1.09000 * 110.33365 * 46.41563 * 15 8 3 17 17 C 1.54339 * 110.91939 * 283.29466 * 15 8 3 18 18 C 1.54526 * 102.64654 * 203.27908 * 17 15 8 19 19 N 1.47665 * 107.05087 * 22.92271 * 18 17 15 20 20 C 1.46893 * 111.00327 * 123.12413 * 19 18 17 21 21 C 1.50710 * 109.46995 * 49.43009 * 20 19 18 22 22 H 1.07994 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.37874 * 119.99541 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00813 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99478 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47358 * 60.00088 * 25 23 21 27 27 H 1.48500 * 109.47066 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46782 * 299.99924 * 25 23 21 29 29 H 1.08995 * 109.47066 * 186.27859 * 1 2 3 30 30 H 1.08998 * 109.47114 * 306.28509 * 1 2 3 31 31 H 1.09005 * 109.46864 * 66.28317 * 1 2 3 32 32 H 1.09005 * 109.47042 * 119.99851 * 2 1 3 33 33 H 1.09003 * 109.47638 * 239.99195 * 2 1 3 34 34 H 0.96996 * 119.99776 * 359.97438 * 6 5 3 35 35 H 0.97004 * 120.00274 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.49310 * 98.31403 * 11 9 8 37 37 H 1.09004 * 109.49851 * 218.41810 * 11 9 8 38 38 H 1.08993 * 109.49473 * 172.80933 * 12 11 9 39 39 H 1.09003 * 109.49158 * 292.86219 * 12 11 9 40 40 H 1.09000 * 110.82819 * 84.95737 * 17 15 8 41 41 H 1.09001 * 110.86156 * 321.62041 * 17 15 8 42 42 H 1.08997 * 109.91862 * 263.56836 * 18 17 15 43 43 H 1.09002 * 109.91522 * 142.27093 * 18 17 15 44 44 H 1.08996 * 109.47331 * 169.43150 * 20 19 18 45 45 H 1.08995 * 109.47005 * 289.43390 * 20 19 18 46 46 H 0.96991 * 120.00230 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6259 1.9744 0.8565 5 6 3.5445 1.4434 0.0876 6 7 4.1581 0.8811 1.1477 7 8 4.2031 1.9500 -0.7959 8 7 1.6225 2.1080 -1.2366 9 6 1.9960 1.5488 -2.3880 10 8 2.6578 0.5329 -2.3567 11 6 1.6262 2.1312 -3.7238 12 6 0.4020 3.0325 -3.5609 13 6 0.6682 4.0534 -2.4512 14 1 1.5296 4.6782 -2.6873 15 6 0.8345 3.3139 -1.1070 16 1 1.2762 3.9769 -0.3631 17 6 -0.6278 2.9802 -0.7431 18 6 -1.3924 4.2300 -1.2344 19 7 -0.5571 4.8687 -2.2712 20 6 -1.2940 4.9976 -3.5354 21 6 -2.6431 5.6147 -3.2697 22 1 -2.9246 5.8844 -2.2626 23 6 -3.5178 5.8347 -4.3125 24 7 -3.1752 5.5057 -5.5389 25 14 -5.1897 6.6002 -3.9833 26 1 -5.0083 7.9438 -3.3776 27 1 -5.9352 6.7293 -5.2611 28 1 -5.9548 5.7354 -3.0495 29 1 -0.3633 -1.0215 0.1124 30 1 -0.3633 0.6082 0.8284 31 1 -0.3633 0.4134 -0.9409 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5140 -0.8899 34 1 3.6314 0.4762 1.8544 35 1 5.1265 0.8814 1.2039 36 1 2.4608 2.7173 -4.1087 37 1 1.3947 1.3255 -4.4206 38 1 0.2081 3.5554 -4.4973 39 1 -0.4640 2.4255 -3.2971 40 1 -0.7406 2.8565 0.3340 41 1 -0.9653 2.0881 -1.2707 42 1 -1.5475 4.9202 -0.4052 43 1 -2.3515 3.9350 -1.6600 44 1 -0.7324 5.6329 -4.2202 45 1 -1.4268 4.0116 -3.9806 46 1 -3.7905 5.6608 -6.2724 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:26 Heat of formation + Delta-G solvation = -52.957007 kcal Electronic energy + Delta-G solvation = -27946.405444 eV Core-core repulsion = 24257.252176 eV Total energy + Delta-G solvation = -3689.153268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37636 -39.29723 -38.09793 -35.70730 -34.17938 -33.48456 -32.72880 -32.08910 -30.32974 -27.94650 -27.31174 -26.09600 -23.68289 -23.07160 -22.30097 -21.73903 -20.64907 -19.42519 -18.12742 -17.46630 -17.20475 -16.46138 -16.30249 -15.75183 -15.55275 -14.90992 -14.81815 -14.49211 -14.25687 -14.13745 -13.78139 -13.48035 -13.30268 -12.99087 -12.72148 -12.53684 -12.14497 -12.08671 -11.82987 -11.79107 -11.38551 -11.20244 -11.14197 -11.01873 -10.87545 -10.76894 -10.49789 -10.46993 -10.12442 -9.95220 -9.87844 -9.77687 -9.24885 -9.06572 -8.58131 -8.51046 -7.28263 -6.08996 -4.10078 2.60262 2.78941 2.97872 3.29026 3.34237 3.36365 3.52966 4.37056 4.53005 4.59771 4.75356 4.76166 4.94784 4.95943 5.02691 5.11567 5.22830 5.28292 5.36292 5.44024 5.49058 5.60575 5.62044 5.68576 5.77222 5.82852 5.94116 6.02775 6.07578 6.19033 6.24023 6.38296 6.51228 6.63690 6.65377 6.66996 6.68386 7.15293 7.18615 7.34372 7.61952 7.70872 7.94273 8.12282 8.18599 8.40513 8.44631 8.96537 9.53886 11.01908 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.003878 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.819738 B = 7218.390185 C = 7520.349894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.127 3.873 4 H 0.110 0.890 5 C 0.513 3.487 6 N -0.858 5.858 7 O -0.522 6.522 8 N -0.574 5.574 9 C 0.534 3.466 10 O -0.547 6.547 11 C -0.133 4.133 12 C -0.146 4.146 13 C 0.070 3.930 14 H 0.093 0.907 15 C 0.139 3.861 16 H 0.090 0.910 17 C -0.157 4.157 18 C 0.050 3.950 19 N -0.521 5.521 20 C 0.180 3.820 21 C -0.517 4.517 22 H 0.063 0.937 23 C 0.059 3.941 24 N -0.895 5.895 25 Si 0.896 3.104 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.398 0.602 35 H 0.400 0.600 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.032 0.968 45 H 0.009 0.991 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 -10.324 13.938 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.019 3.981 4 H 0.127 0.873 5 C 0.296 3.704 6 N -0.423 5.423 7 O -0.395 6.395 8 N -0.306 5.306 9 C 0.324 3.676 10 O -0.426 6.426 11 C -0.173 4.173 12 C -0.185 4.185 13 C -0.039 4.039 14 H 0.111 0.889 15 C 0.035 3.965 16 H 0.108 0.892 17 C -0.196 4.196 18 C -0.078 4.078 19 N -0.245 5.245 20 C 0.054 3.946 21 C -0.556 4.556 22 H 0.081 0.919 23 C -0.143 4.143 24 N -0.534 5.534 25 Si 0.724 3.276 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.226 0.774 35 H 0.230 0.770 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.500 -9.904 13.165 19.017 hybrid contribution -1.035 -0.432 0.274 1.155 sum 8.465 -10.336 13.439 18.950 Atomic orbital electron populations 1.21866 0.94667 1.01664 1.02485 1.22006 0.97081 0.94236 1.04649 1.21011 0.91199 0.96332 0.89605 0.87266 1.20890 0.90999 0.77192 0.81307 1.43799 1.11137 1.62813 1.24592 1.90745 1.66668 1.44197 1.37914 1.46662 1.52989 1.26274 1.04626 1.20123 0.77935 0.83679 0.85817 1.90581 1.39099 1.25324 1.87556 1.21654 1.00457 1.01090 0.94105 1.22303 0.96601 0.97652 1.01960 1.22790 0.96655 0.92734 0.91771 0.88926 1.21723 0.90848 0.84609 0.99347 0.89240 1.23367 0.94833 1.00302 1.01097 1.22790 0.97409 0.92257 0.95352 1.64029 1.04856 1.44578 1.11057 1.20068 0.92630 0.96417 0.85449 1.21182 0.99344 1.40893 0.94146 0.91913 1.24955 0.98613 0.95725 0.95010 1.69930 1.36539 1.47794 0.99136 0.86595 0.83733 0.79916 0.77381 1.20158 1.21345 1.20302 0.92575 0.92615 0.91983 0.91340 0.88019 0.77362 0.76967 0.88414 0.88589 0.88894 0.91176 0.91305 0.90805 0.91739 0.90530 0.95019 0.97323 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.72 37.16 0.32 -1.14 16 2 C -0.14 -1.46 5.11 -26.73 -0.14 -1.60 16 3 C 0.13 1.45 2.29 -69.08 -0.16 1.29 16 4 H 0.11 0.96 7.81 -51.93 -0.41 0.56 16 5 C 0.51 6.62 6.69 -10.98 -0.07 6.55 16 6 N -0.86 -6.89 8.75 31.22 0.27 -6.62 16 7 O -0.52 -9.33 15.58 -14.18 -0.22 -9.55 16 8 N -0.57 -8.00 1.77 -160.21 -0.28 -8.28 16 9 C 0.53 8.68 6.16 -11.79 -0.07 8.60 16 10 O -0.55 -10.08 12.86 -14.18 -0.18 -10.27 16 11 C -0.13 -2.02 6.08 -28.11 -0.17 -2.19 16 12 C -0.15 -2.43 3.73 -26.73 -0.10 -2.53 16 13 C 0.07 1.16 3.54 -66.21 -0.23 0.93 16 14 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 15 C 0.14 1.95 2.99 -67.54 -0.20 1.75 16 16 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 17 C -0.16 -2.12 4.80 -25.23 -0.12 -2.24 16 18 C 0.05 0.88 5.75 -2.60 -0.01 0.86 16 19 N -0.52 -10.27 5.30 -224.45 -1.19 -11.46 16 20 C 0.18 4.31 3.85 -4.98 -0.02 4.29 16 21 C -0.52 -13.66 7.92 -34.44 -0.27 -13.93 16 22 H 0.06 1.63 6.88 -52.49 -0.36 1.27 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.90 -25.52 13.29 55.43 0.74 -24.79 16 25 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.47 7.82 -51.93 -0.41 0.06 16 31 H 0.06 0.74 5.76 -51.93 -0.30 0.44 16 32 H 0.07 0.51 7.47 -51.93 -0.39 0.12 16 33 H 0.10 1.40 5.59 -51.93 -0.29 1.11 16 34 H 0.40 1.84 8.20 -40.82 -0.33 1.51 16 35 H 0.40 2.88 8.93 -40.82 -0.36 2.52 16 36 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.71 6.54 -51.93 -0.34 1.37 16 39 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 40 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 41 H 0.07 1.04 5.39 -51.93 -0.28 0.76 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.52 6.52 -51.93 -0.34 1.18 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.01 0.23 5.48 -51.93 -0.28 -0.06 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -33.09 343.61 -8.99 -42.09 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.94 Total: 5.71 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.35 Total: 2.15 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.46 Total: -51.15 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.40 Total: -19.82 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.09 -8.99 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.869 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds