Wall clock time and date at job start Tue Mar 31 2020 03:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 H 1.08994 * 109.47908 * 56.46435 * 3 2 1 5 5 C 1.50701 * 109.47326 * 176.46432 * 3 2 1 6 6 N 1.34777 * 120.00121 * 299.99974 * 5 3 2 7 7 O 1.21283 * 120.00269 * 119.99234 * 5 3 2 8 8 N 1.46504 * 109.46780 * 296.46144 * 3 2 1 9 9 C 1.33343 * 117.29135 * 302.87631 * 8 3 2 10 10 O 1.21285 * 118.80307 * 359.76430 * 9 8 3 11 11 C 1.50349 * 122.40187 * 179.73554 * 9 8 3 12 12 C 1.52888 * 109.30663 * 338.37055 * 11 9 8 13 13 C 1.53118 * 109.33557 * 52.84584 * 12 11 9 14 14 H 1.08999 * 111.25506 * 60.12765 * 13 12 11 15 15 C 1.44635 * 117.28526 * 122.61906 * 8 3 2 16 16 H 1.09000 * 110.33365 * 46.41563 * 15 8 3 17 17 C 1.54339 * 110.91939 * 283.29466 * 15 8 3 18 18 C 1.54526 * 102.64654 * 203.27908 * 17 15 8 19 19 N 1.47665 * 107.05087 * 22.92271 * 18 17 15 20 20 C 1.46893 * 111.00327 * 123.12413 * 19 18 17 21 21 C 1.50710 * 109.46995 * 49.43009 * 20 19 18 22 22 H 1.07994 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.37874 * 119.99541 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00813 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99478 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47358 * 60.00088 * 25 23 21 27 27 H 1.48500 * 109.47066 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46782 * 299.99924 * 25 23 21 29 29 H 1.08995 * 109.47066 * 186.27859 * 1 2 3 30 30 H 1.08998 * 109.47114 * 306.28509 * 1 2 3 31 31 H 1.09005 * 109.46864 * 66.28317 * 1 2 3 32 32 H 1.09005 * 109.47042 * 119.99851 * 2 1 3 33 33 H 1.09003 * 109.47638 * 239.99195 * 2 1 3 34 34 H 0.96996 * 119.99776 * 359.97438 * 6 5 3 35 35 H 0.97004 * 120.00274 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.49310 * 98.31403 * 11 9 8 37 37 H 1.09004 * 109.49851 * 218.41810 * 11 9 8 38 38 H 1.08993 * 109.49473 * 172.80933 * 12 11 9 39 39 H 1.09003 * 109.49158 * 292.86219 * 12 11 9 40 40 H 1.09000 * 110.82819 * 84.95737 * 17 15 8 41 41 H 1.09001 * 110.86156 * 321.62041 * 17 15 8 42 42 H 1.08997 * 109.91862 * 263.56836 * 18 17 15 43 43 H 1.09002 * 109.91522 * 142.27093 * 18 17 15 44 44 H 1.08996 * 109.47331 * 169.43150 * 20 19 18 45 45 H 1.08995 * 109.47005 * 289.43390 * 20 19 18 46 46 H 0.96991 * 120.00230 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6259 1.9744 0.8565 5 6 3.5445 1.4434 0.0876 6 7 4.1581 0.8811 1.1477 7 8 4.2031 1.9500 -0.7959 8 7 1.6225 2.1080 -1.2366 9 6 1.9960 1.5488 -2.3880 10 8 2.6578 0.5329 -2.3567 11 6 1.6262 2.1312 -3.7238 12 6 0.4020 3.0325 -3.5609 13 6 0.6682 4.0534 -2.4512 14 1 1.5296 4.6782 -2.6873 15 6 0.8345 3.3139 -1.1070 16 1 1.2762 3.9769 -0.3631 17 6 -0.6278 2.9802 -0.7431 18 6 -1.3924 4.2300 -1.2344 19 7 -0.5571 4.8687 -2.2712 20 6 -1.2940 4.9976 -3.5354 21 6 -2.6431 5.6147 -3.2697 22 1 -2.9246 5.8844 -2.2626 23 6 -3.5178 5.8347 -4.3125 24 7 -3.1752 5.5057 -5.5389 25 14 -5.1897 6.6002 -3.9833 26 1 -5.0083 7.9438 -3.3776 27 1 -5.9352 6.7293 -5.2611 28 1 -5.9548 5.7354 -3.0495 29 1 -0.3633 -1.0215 0.1124 30 1 -0.3633 0.6082 0.8284 31 1 -0.3633 0.4134 -0.9409 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5140 -0.8899 34 1 3.6314 0.4762 1.8544 35 1 5.1265 0.8814 1.2039 36 1 2.4608 2.7173 -4.1087 37 1 1.3947 1.3255 -4.4206 38 1 0.2081 3.5554 -4.4973 39 1 -0.4640 2.4255 -3.2971 40 1 -0.7406 2.8565 0.3340 41 1 -0.9653 2.0881 -1.2707 42 1 -1.5475 4.9202 -0.4052 43 1 -2.3515 3.9350 -1.6600 44 1 -0.7324 5.6329 -4.2202 45 1 -1.4268 4.0116 -3.9806 46 1 -3.7905 5.6608 -6.2724 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:25 Heat of formation + Delta-G solvation = -77.931396 kcal Electronic energy + Delta-G solvation = -27947.488415 eV Core-core repulsion = 24257.252176 eV Total energy + Delta-G solvation = -3690.236239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.54737 -40.47860 -39.36047 -36.86935 -35.49171 -34.64719 -34.38475 -33.21486 -31.74295 -29.38185 -28.37940 -27.72568 -25.14160 -24.58435 -23.24887 -22.93513 -21.86641 -20.76449 -19.25663 -18.47408 -18.35075 -18.27732 -17.35081 -17.18111 -16.66280 -16.45512 -16.08039 -15.89860 -15.45687 -15.22173 -15.01982 -14.70213 -14.59571 -14.39306 -14.19238 -13.68005 -13.61564 -13.38625 -13.13477 -12.98031 -12.81242 -12.61673 -12.52353 -12.39015 -12.19936 -12.06867 -11.98298 -11.84518 -11.64188 -11.44890 -11.13227 -11.00116 -10.60821 -10.59185 -10.38840 -9.69792 -8.91740 -8.17344 -6.25214 1.43661 1.45941 1.53391 1.58344 1.69750 1.84921 2.42982 2.67982 3.16586 3.26501 3.42859 3.60242 3.68848 3.88991 3.93628 3.95987 4.08319 4.15364 4.22813 4.31100 4.37041 4.49466 4.51800 4.62170 4.72486 4.78801 4.84586 4.91632 4.99339 5.06654 5.11240 5.18802 5.23321 5.31424 5.36585 5.44173 5.47605 5.54579 5.69464 5.93791 6.03632 6.33612 6.41957 6.48809 6.60546 6.91746 7.16305 7.41211 7.43505 8.93857 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.003878 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.819738 B = 7218.390185 C = 7520.349894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.121 3.879 4 H 0.149 0.851 5 C 0.507 3.493 6 N -0.834 5.834 7 O -0.581 6.581 8 N -0.570 5.570 9 C 0.530 3.470 10 O -0.571 6.571 11 C -0.129 4.129 12 C -0.131 4.131 13 C 0.064 3.936 14 H 0.088 0.912 15 C 0.150 3.850 16 H 0.110 0.890 17 C -0.139 4.139 18 C 0.049 3.951 19 N -0.530 5.530 20 C 0.197 3.803 21 C -0.527 4.527 22 H 0.067 0.933 23 C 0.005 3.995 24 N -0.932 5.932 25 Si 0.963 3.037 26 H -0.270 1.270 27 H -0.288 1.288 28 H -0.265 1.265 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.418 0.582 35 H 0.406 0.594 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.048 0.952 44 H -0.005 1.005 45 H -0.007 1.007 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.385 -10.966 17.579 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.014 3.986 4 H 0.166 0.834 5 C 0.291 3.709 6 N -0.399 5.399 7 O -0.459 6.459 8 N -0.300 5.300 9 C 0.320 3.680 10 O -0.451 6.451 11 C -0.170 4.170 12 C -0.170 4.170 13 C -0.045 4.045 14 H 0.106 0.894 15 C 0.046 3.954 16 H 0.128 0.872 17 C -0.178 4.178 18 C -0.079 4.079 19 N -0.254 5.254 20 C 0.071 3.929 21 C -0.566 4.566 22 H 0.085 0.915 23 C -0.194 4.194 24 N -0.573 5.573 25 Si 0.788 3.212 26 H -0.195 1.195 27 H -0.214 1.214 28 H -0.190 1.190 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.250 0.750 35 H 0.237 0.763 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.013 0.987 45 H 0.011 0.989 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.014 -10.573 16.899 21.878 hybrid contribution -0.821 -0.263 -0.816 1.187 sum 8.194 -10.836 16.084 21.053 Atomic orbital electron populations 1.21846 0.94042 1.02553 1.01960 1.21945 0.97474 0.93270 1.04609 1.21371 0.90610 0.97316 0.89313 0.83397 1.21195 0.91566 0.76748 0.81398 1.43588 1.11743 1.60941 1.23643 1.90729 1.67807 1.47142 1.40269 1.46584 1.52248 1.25944 1.05177 1.20104 0.77910 0.83509 0.86484 1.90577 1.40278 1.26307 1.87946 1.21616 0.99706 1.00934 0.94718 1.22055 0.96844 0.97440 1.00684 1.22840 0.95155 0.92688 0.93791 0.89396 1.21634 0.91541 0.84653 0.97587 0.87223 1.23272 0.93215 0.97912 1.03422 1.22794 0.96292 0.94216 0.94646 1.63872 1.05614 1.46465 1.09451 1.19659 0.91902 0.94539 0.86821 1.21553 1.00258 1.40434 0.94308 0.91490 1.25831 1.02510 0.96276 0.94753 1.70070 1.37905 1.49215 1.00071 0.85533 0.79158 0.79214 0.77309 1.19537 1.21357 1.19023 0.91752 0.90298 0.94556 0.87785 0.91601 0.75003 0.76256 0.88156 0.88090 0.91671 0.92204 0.87131 0.91350 0.90406 0.93328 0.98656 0.98945 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.72 71.98 0.63 -1.75 16 2 C -0.13 -2.36 5.11 30.59 0.16 -2.20 16 3 C 0.12 2.37 2.29 44.24 0.10 2.47 16 4 H 0.15 1.75 7.81 -2.39 -0.02 1.73 16 5 C 0.51 11.90 6.69 87.66 0.59 12.48 16 6 N -0.83 -10.68 8.75 -173.53 -1.52 -12.20 16 7 O -0.58 -20.37 15.58 15.83 0.25 -20.12 16 8 N -0.57 -14.90 1.77 -779.98 -1.38 -16.28 16 9 C 0.53 17.17 6.16 87.77 0.54 17.72 16 10 O -0.57 -21.15 12.86 15.82 0.20 -20.94 16 11 C -0.13 -4.09 6.08 29.70 0.18 -3.91 16 12 C -0.13 -4.58 3.73 30.60 0.11 -4.47 16 13 C 0.06 2.16 3.54 45.14 0.16 2.32 16 14 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 15 C 0.15 3.89 2.99 46.24 0.14 4.02 16 16 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 17 C -0.14 -3.36 4.80 31.57 0.15 -3.21 16 18 C 0.05 1.63 5.75 86.68 0.50 2.13 16 19 N -0.53 -21.12 5.30 -864.04 -4.58 -25.70 16 20 C 0.20 9.91 3.85 85.56 0.33 10.24 16 21 C -0.53 -28.38 7.92 25.60 0.20 -28.18 16 22 H 0.07 3.47 6.88 -2.91 -0.02 3.45 16 23 C 0.00 0.25 5.46 84.65 0.46 0.72 16 24 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 25 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.91 7.82 -2.39 -0.02 0.89 16 31 H 0.04 0.78 5.76 -2.38 -0.01 0.77 16 32 H 0.10 1.06 7.47 -2.38 -0.02 1.04 16 33 H 0.07 1.71 5.59 -2.39 -0.01 1.70 16 34 H 0.42 1.99 8.20 -92.71 -0.76 1.23 16 35 H 0.41 4.77 8.93 -92.71 -0.83 3.95 16 36 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 37 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.06 2.61 6.54 -2.39 -0.02 2.59 16 39 H 0.06 2.18 6.53 -2.39 -0.02 2.17 16 40 H 0.11 1.83 7.90 -2.39 -0.02 1.81 16 41 H 0.07 1.79 5.39 -2.39 -0.01 1.78 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.05 1.91 6.52 -2.39 -0.02 1.90 16 44 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H -0.01 -0.37 5.48 -2.39 -0.01 -0.38 16 46 H 0.26 14.68 8.31 -92.72 -0.77 13.91 16 Total: -1.00 -75.84 343.61 -1.04 -76.88 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.57 Total: 19.56 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.25 Total: 8.38 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -7.19 Total: -108.72 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: 0.45 Total: -41.07 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -75.84 -1.04 -76.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.054 kcal (2) G-P(sol) polarization free energy of solvation -75.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds