Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.39189 * 2 1 4 4 C 1.54986 * 110.34747 * 237.75783 * 2 1 3 5 5 C 1.53260 * 104.18382 * 243.62670 * 4 2 1 6 6 H 1.08997 * 110.82542 * 90.54536 * 5 4 2 7 7 C 1.52256 * 113.90892 * 215.57202 * 5 4 2 8 8 C 1.53653 * 107.57548 * 177.25483 * 7 5 4 9 9 C 1.52818 * 110.61144 * 303.87192 * 8 7 5 10 10 H 1.09002 * 109.23018 * 293.43550 * 9 8 7 11 11 C 1.50701 * 109.23426 * 174.02200 * 9 8 7 12 12 O 1.21273 * 120.00157 * 240.00250 * 11 9 8 13 13 N 1.34775 * 119.99602 * 60.00176 * 11 9 8 14 14 C 1.46504 * 119.99695 * 180.02562 * 13 11 9 15 15 C 1.50704 * 109.47300 * 179.97438 * 14 13 11 16 16 O 1.21298 * 119.99445 * 359.97438 * 15 14 13 17 17 N 1.34767 * 120.00232 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00232 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99646 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00302 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00117 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47009 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47336 * 119.99986 * 22 20 18 25 25 H 1.48503 * 109.47121 * 239.99615 * 22 20 18 26 26 C 1.53630 * 110.70207 * 53.74837 * 9 8 7 27 27 N 1.45669 * 107.79965 * 302.63062 * 26 9 8 28 28 C 1.47096 * 116.52883 * 182.67032 * 27 26 9 29 29 H 1.08993 * 109.47461 * 299.20488 * 1 2 3 30 30 H 1.09000 * 109.47439 * 59.20973 * 1 2 3 31 31 H 1.09002 * 109.46769 * 179.20396 * 1 2 3 32 32 H 1.09006 * 110.48823 * 124.95485 * 4 2 1 33 33 H 1.09001 * 110.60768 * 2.35909 * 4 2 1 34 34 H 1.09001 * 109.83251 * 296.77221 * 7 5 4 35 35 H 1.08991 * 109.83781 * 57.73215 * 7 5 4 36 36 H 1.09000 * 109.25179 * 64.16361 * 8 7 5 37 37 H 1.09000 * 109.24914 * 183.61426 * 8 7 5 38 38 H 0.97001 * 120.00537 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.47221 * 299.99545 * 14 13 11 40 40 H 1.08997 * 109.47225 * 59.99627 * 14 13 11 41 41 H 0.97005 * 120.00077 * 359.97438 * 17 15 14 42 42 H 0.97004 * 120.00217 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.79482 * 183.05083 * 26 9 8 44 44 H 1.09002 * 109.79013 * 62.20112 * 26 9 8 45 45 H 1.08996 * 110.61531 * 316.08518 * 28 27 26 46 46 H 1.09002 * 110.61640 * 79.07161 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0689 -0.7753 -1.2291 5 6 2.8184 -1.9666 -0.6226 6 1 2.1544 -2.8230 -0.5051 7 6 4.0664 -2.3692 -1.3962 8 6 4.7360 -3.5205 -0.6300 9 6 5.0336 -3.1067 0.8106 10 1 5.7918 -2.3235 0.8099 11 6 5.5523 -4.2989 1.5726 12 8 4.9558 -4.7008 2.5490 13 7 6.6790 -4.9185 1.1688 14 6 7.1830 -6.0778 1.9092 15 6 8.4449 -6.5809 1.2567 16 8 8.8801 -6.0257 0.2699 17 7 9.0897 -7.6474 1.7695 18 6 10.2379 -8.1047 1.1762 19 1 10.6255 -7.6104 0.2976 20 6 10.9025 -9.2046 1.7046 21 7 10.4306 -9.8062 2.7733 22 14 12.4666 -9.8280 0.8957 23 1 12.7844 -8.9837 -0.2837 24 1 13.5869 -9.7625 1.8683 25 1 12.2717 -11.2340 0.4594 26 6 3.7641 -2.5812 1.4980 27 7 3.2582 -1.4672 0.7074 28 6 2.0697 -0.7764 1.2307 29 1 -0.3634 0.5014 0.8970 30 1 -0.3634 0.5260 -0.8828 31 1 -0.3633 -1.0276 -0.0143 32 1 2.7501 -0.1497 -1.8061 33 1 1.2465 -1.1207 -1.8555 34 1 3.7900 -2.7020 -2.3967 35 1 4.7495 -1.5225 -1.4628 36 1 4.0709 -4.3841 -0.6257 37 1 5.6688 -3.7880 -1.1265 38 1 7.1559 -4.5972 0.3876 39 1 7.3964 -5.7873 2.9379 40 1 6.4316 -6.8674 1.9032 41 1 8.7418 -8.0911 2.5589 42 1 10.8944 -10.5744 3.1420 43 1 4.0038 -2.2403 2.5052 44 1 3.0149 -3.3717 1.5436 45 1 1.3316 -1.4965 1.5838 46 1 2.3466 -0.0868 2.0281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352200140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = -86.481411 kcal Electronic energy + Delta-G solvation = -25502.513304 eV Core-core repulsion = 21811.906308 eV Total energy + Delta-G solvation = -3690.606995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.64205 -39.32559 -38.12648 -35.60150 -34.48873 -33.70879 -32.57107 -31.49799 -31.29964 -28.05511 -27.46000 -26.25880 -24.52986 -22.90951 -22.46090 -20.54508 -20.27595 -19.75817 -19.42713 -18.11746 -17.22872 -15.96364 -15.83647 -15.71658 -15.45397 -15.21547 -14.93451 -14.57229 -14.26032 -14.11687 -13.91345 -13.75246 -13.44782 -13.12059 -12.87026 -12.70368 -12.56020 -12.53604 -12.19644 -11.90550 -11.74412 -11.64867 -11.32191 -11.15378 -11.12288 -11.01982 -10.73072 -10.69615 -10.45799 -10.41930 -10.33642 -9.66103 -9.59679 -8.80332 -8.64622 -8.60750 -8.11571 -6.52825 -3.94877 2.81293 3.09346 3.20596 3.24491 3.30704 3.72627 3.85412 4.10682 4.20864 4.34404 4.62218 4.66670 4.73232 4.76051 4.86638 4.98878 5.09052 5.12604 5.15750 5.26143 5.27772 5.30141 5.34174 5.43340 5.51237 5.59599 5.62881 5.68703 5.73488 5.78992 5.84189 5.88908 5.90133 5.95246 6.01726 6.02448 6.06280 6.17812 6.67419 6.70884 6.98783 7.44976 7.80330 7.90954 8.41799 8.45925 9.03350 9.37956 9.85685 10.64101 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.043623 B = 0.002223 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.711574 B =12593.984875 C =13041.222008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.112 4.112 5 C 0.058 3.942 6 H 0.051 0.949 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.098 4.098 10 H 0.105 0.895 11 C 0.516 3.484 12 O -0.552 6.552 13 N -0.705 5.705 14 C 0.108 3.892 15 C 0.428 3.572 16 O -0.597 6.597 17 N -0.549 5.549 18 C -0.304 4.304 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.078 3.922 27 N -0.526 5.526 28 C 0.047 3.953 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.411 0.589 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.472 16.710 -5.331 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.050 4.050 6 H 0.069 0.931 7 C -0.140 4.140 8 C -0.152 4.152 9 C -0.120 4.120 10 H 0.123 0.877 11 C 0.301 3.699 12 O -0.430 6.430 13 N -0.359 5.359 14 C -0.020 4.020 15 C 0.214 3.786 16 O -0.484 6.484 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.050 4.050 27 N -0.250 5.250 28 C -0.080 4.080 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.249 0.751 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.064 16.932 -5.163 24.587 hybrid contribution 0.242 -1.253 0.077 1.279 sum -16.822 15.679 -5.087 23.551 Atomic orbital electron populations 1.21861 0.94796 1.01802 1.01794 1.22136 0.95198 0.99770 0.94291 0.90215 1.22244 0.99375 0.96371 0.96997 1.22482 0.95644 0.96218 0.90616 0.93107 1.21495 0.96255 0.98425 0.97855 1.21591 1.01884 0.98506 0.93227 1.21293 0.99125 0.96125 0.95449 0.87719 1.20517 0.80327 0.84321 0.84727 1.90677 1.58235 1.66449 1.27639 1.45734 1.26283 1.31233 1.32648 1.20956 0.95914 0.88955 0.96146 1.19751 0.87041 0.84323 0.87514 1.90497 1.69223 1.60122 1.28538 1.41808 1.23265 1.25850 1.27490 1.19782 1.00393 1.11512 1.11703 0.87603 1.25336 0.99831 0.96438 0.96187 1.69623 1.40494 1.21864 1.21484 0.85752 0.80586 0.78581 0.79133 1.19119 1.20603 1.20620 1.21706 0.95002 0.91554 0.96765 1.63839 1.31092 1.26435 1.03652 1.22904 0.90845 0.97111 0.97183 0.92559 0.92427 0.92731 0.90789 0.91280 0.91097 0.90438 0.91732 0.90575 0.75072 0.89872 0.89935 0.77044 0.91633 0.89988 0.93808 0.94011 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.95 37.16 0.33 -0.53 16 2 C -0.09 -0.68 3.69 -88.41 -0.33 -1.00 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.82 6.28 -25.55 -0.16 -0.98 16 5 C 0.06 0.53 2.50 -66.95 -0.17 0.36 16 6 H 0.05 0.50 7.97 -51.93 -0.41 0.09 16 7 C -0.10 -0.91 5.64 -26.77 -0.15 -1.06 16 8 C -0.11 -1.21 5.07 -26.49 -0.13 -1.34 16 9 C -0.10 -1.19 2.69 -91.54 -0.25 -1.43 16 10 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 11 C 0.52 8.06 7.13 -10.99 -0.08 7.98 16 12 O -0.55 -10.28 15.95 5.56 0.09 -10.20 16 13 N -0.71 -11.67 5.43 -61.47 -0.33 -12.00 16 14 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 15 C 0.43 9.80 7.85 -10.99 -0.09 9.72 16 16 O -0.60 -15.20 15.24 5.54 0.08 -15.12 16 17 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 18 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 19 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 21 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 22 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.08 0.93 4.43 -4.16 -0.02 0.91 16 27 N -0.53 -5.35 4.84 -224.49 -1.09 -6.43 16 28 C 0.05 0.41 6.24 -2.55 -0.02 0.40 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.53 8.00 -51.93 -0.42 0.11 16 33 H 0.07 0.45 7.74 -51.93 -0.40 0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 37 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 38 H 0.41 6.67 6.93 -40.82 -0.28 6.39 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.40 9.46 7.90 -40.82 -0.32 9.13 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.04 0.57 7.88 -51.93 -0.41 0.16 16 45 H 0.04 0.37 7.88 -51.93 -0.41 -0.04 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -30.53 367.64 -9.03 -39.55 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -7.64 Total: 12.89 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.32 Total: 7.13 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.75 Total: -55.29 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: 0.17 Total: -25.32 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.53 -9.03 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352200140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.928 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds