Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.39189 * 2 1 4 4 C 1.54986 * 110.34747 * 237.75783 * 2 1 3 5 5 C 1.53260 * 104.18382 * 243.62670 * 4 2 1 6 6 H 1.08997 * 110.82542 * 90.54536 * 5 4 2 7 7 C 1.52256 * 113.90892 * 215.57202 * 5 4 2 8 8 C 1.53653 * 107.57548 * 177.25483 * 7 5 4 9 9 C 1.52818 * 110.61144 * 303.87192 * 8 7 5 10 10 H 1.09002 * 109.23018 * 293.43550 * 9 8 7 11 11 C 1.50701 * 109.23426 * 174.02200 * 9 8 7 12 12 O 1.21273 * 120.00157 * 240.00250 * 11 9 8 13 13 N 1.34775 * 119.99602 * 60.00176 * 11 9 8 14 14 C 1.46504 * 119.99695 * 180.02562 * 13 11 9 15 15 C 1.50704 * 109.47300 * 179.97438 * 14 13 11 16 16 O 1.21298 * 119.99445 * 359.97438 * 15 14 13 17 17 N 1.34767 * 120.00232 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00232 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99646 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00302 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00117 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47009 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47336 * 119.99986 * 22 20 18 25 25 H 1.48503 * 109.47121 * 239.99615 * 22 20 18 26 26 C 1.53630 * 110.70207 * 53.74837 * 9 8 7 27 27 N 1.45669 * 107.79965 * 302.63062 * 26 9 8 28 28 C 1.47096 * 116.52883 * 182.67032 * 27 26 9 29 29 H 1.08993 * 109.47461 * 299.20488 * 1 2 3 30 30 H 1.09000 * 109.47439 * 59.20973 * 1 2 3 31 31 H 1.09002 * 109.46769 * 179.20396 * 1 2 3 32 32 H 1.09006 * 110.48823 * 124.95485 * 4 2 1 33 33 H 1.09001 * 110.60768 * 2.35909 * 4 2 1 34 34 H 1.09001 * 109.83251 * 296.77221 * 7 5 4 35 35 H 1.08991 * 109.83781 * 57.73215 * 7 5 4 36 36 H 1.09000 * 109.25179 * 64.16361 * 8 7 5 37 37 H 1.09000 * 109.24914 * 183.61426 * 8 7 5 38 38 H 0.97001 * 120.00537 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.47221 * 299.99545 * 14 13 11 40 40 H 1.08997 * 109.47225 * 59.99627 * 14 13 11 41 41 H 0.97005 * 120.00077 * 359.97438 * 17 15 14 42 42 H 0.97004 * 120.00217 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.79482 * 183.05083 * 26 9 8 44 44 H 1.09002 * 109.79013 * 62.20112 * 26 9 8 45 45 H 1.08996 * 110.61531 * 316.08518 * 28 27 26 46 46 H 1.09002 * 110.61640 * 79.07161 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0689 -0.7753 -1.2291 5 6 2.8184 -1.9666 -0.6226 6 1 2.1544 -2.8230 -0.5051 7 6 4.0664 -2.3692 -1.3962 8 6 4.7360 -3.5205 -0.6300 9 6 5.0336 -3.1067 0.8106 10 1 5.7918 -2.3235 0.8099 11 6 5.5523 -4.2989 1.5726 12 8 4.9558 -4.7008 2.5490 13 7 6.6790 -4.9185 1.1688 14 6 7.1830 -6.0778 1.9092 15 6 8.4449 -6.5809 1.2567 16 8 8.8801 -6.0257 0.2699 17 7 9.0897 -7.6474 1.7695 18 6 10.2379 -8.1047 1.1762 19 1 10.6255 -7.6104 0.2976 20 6 10.9025 -9.2046 1.7046 21 7 10.4306 -9.8062 2.7733 22 14 12.4666 -9.8280 0.8957 23 1 12.7844 -8.9837 -0.2837 24 1 13.5869 -9.7625 1.8683 25 1 12.2717 -11.2340 0.4594 26 6 3.7641 -2.5812 1.4980 27 7 3.2582 -1.4672 0.7074 28 6 2.0697 -0.7764 1.2307 29 1 -0.3634 0.5014 0.8970 30 1 -0.3634 0.5260 -0.8828 31 1 -0.3633 -1.0276 -0.0143 32 1 2.7501 -0.1497 -1.8061 33 1 1.2465 -1.1207 -1.8555 34 1 3.7900 -2.7020 -2.3967 35 1 4.7495 -1.5225 -1.4628 36 1 4.0709 -4.3841 -0.6257 37 1 5.6688 -3.7880 -1.1265 38 1 7.1559 -4.5972 0.3876 39 1 7.3964 -5.7873 2.9379 40 1 6.4316 -6.8674 1.9032 41 1 8.7418 -8.0911 2.5589 42 1 10.8944 -10.5744 3.1420 43 1 4.0038 -2.2403 2.5052 44 1 3.0149 -3.3717 1.5436 45 1 1.3316 -1.4965 1.5838 46 1 2.3466 -0.0868 2.0281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352200140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = -108.093930 kcal Electronic energy + Delta-G solvation = -25503.450493 eV Core-core repulsion = 21811.906308 eV Total energy + Delta-G solvation = -3691.544185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64277 -40.59410 -39.80143 -36.43885 -36.27493 -35.34480 -33.41579 -33.32982 -32.21724 -29.44013 -28.31271 -27.19015 -26.24731 -23.78728 -23.39588 -21.42358 -21.39794 -21.11588 -20.55808 -20.05613 -18.58743 -17.36814 -17.12057 -16.87440 -16.54460 -16.41278 -16.17244 -16.06810 -15.75783 -15.36303 -15.06168 -14.86833 -14.54305 -14.01983 -13.85876 -13.84760 -13.57087 -13.49328 -13.38303 -13.27124 -13.17389 -12.92077 -12.54138 -12.45777 -12.11726 -12.05614 -11.83171 -11.71042 -11.59204 -11.48983 -11.33233 -11.23244 -10.86563 -10.57406 -10.23081 -10.09813 -9.43369 -8.52438 -6.02729 1.34170 1.42364 1.53513 1.56467 1.89159 1.96348 2.30162 2.98497 3.12474 3.14658 3.49592 3.51604 3.79894 3.85093 3.98262 4.00886 4.14733 4.22974 4.30711 4.36168 4.40109 4.42546 4.45636 4.53120 4.66458 4.68724 4.74080 4.79030 4.87457 4.90155 5.00035 5.05505 5.06843 5.16946 5.24288 5.26248 5.32581 5.37541 5.41468 5.46759 5.90421 5.96076 6.15992 6.43408 6.50373 7.02068 7.12088 7.42633 7.92476 8.64660 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.043623 B = 0.002223 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.711574 B =12593.984875 C =13041.222008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.085 0.915 4 C -0.108 4.108 5 C 0.056 3.944 6 H 0.041 0.959 7 C -0.096 4.096 8 C -0.112 4.112 9 C -0.089 4.089 10 H 0.117 0.883 11 C 0.518 3.482 12 O -0.582 6.582 13 N -0.705 5.705 14 C 0.120 3.880 15 C 0.433 3.567 16 O -0.623 6.623 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.087 0.913 20 C -0.012 4.012 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.085 3.915 27 N -0.529 5.529 28 C 0.043 3.957 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.414 0.586 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.398 0.602 42 H 0.280 0.720 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.036 0.964 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 17.664 -6.352 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.052 4.052 6 H 0.059 0.941 7 C -0.134 4.134 8 C -0.150 4.150 9 C -0.110 4.110 10 H 0.134 0.866 11 C 0.305 3.695 12 O -0.462 6.462 13 N -0.358 5.358 14 C -0.008 4.008 15 C 0.220 3.780 16 O -0.511 6.511 17 N -0.195 5.195 18 C -0.465 4.465 19 H 0.105 0.895 20 C -0.213 4.213 21 N -0.557 5.557 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.044 4.044 27 N -0.254 5.254 28 C -0.085 4.085 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.253 0.747 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.470 17.900 -6.183 25.765 hybrid contribution 0.305 -1.516 0.421 1.602 sum -17.166 16.384 -5.762 24.419 Atomic orbital electron populations 1.21834 0.93822 1.01722 1.02536 1.22132 0.95966 0.99640 0.93235 0.89685 1.22250 0.99648 0.95571 0.97097 1.22561 0.95792 0.96707 0.90147 0.94097 1.21484 0.95965 0.97693 0.98266 1.21595 1.02038 0.99057 0.92298 1.21282 0.99323 0.94578 0.95846 0.86556 1.21119 0.79396 0.84655 0.84298 1.90663 1.58949 1.67499 1.29112 1.45747 1.26667 1.30789 1.32632 1.20779 0.93830 0.89946 0.96239 1.20403 0.87605 0.83191 0.86791 1.90474 1.70234 1.60658 1.29690 1.41859 1.23253 1.26615 1.27797 1.19781 1.01950 1.12713 1.12102 0.89498 1.26152 1.02536 0.96033 0.96548 1.69687 1.41632 1.22163 1.22171 0.84796 0.76864 0.78069 0.78153 1.19360 1.19652 1.19650 1.21558 0.94534 0.91695 0.96645 1.63878 1.31955 1.25521 1.03997 1.23005 0.90256 0.97072 0.98172 0.92196 0.91331 0.93220 0.90132 0.90140 0.89423 0.90005 0.92608 0.90338 0.74720 0.88913 0.88974 0.76745 0.91073 0.90998 0.95471 0.94555 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.95 71.98 0.64 -0.76 16 2 C -0.09 -1.12 3.69 -9.36 -0.03 -1.16 16 3 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -1.34 6.28 31.36 0.20 -1.14 16 5 C 0.06 0.93 2.50 44.40 0.11 1.04 16 6 H 0.04 0.77 7.97 -2.39 -0.02 0.75 16 7 C -0.10 -1.52 5.64 30.57 0.17 -1.34 16 8 C -0.11 -2.24 5.07 30.75 0.16 -2.09 16 9 C -0.09 -2.08 2.69 -11.39 -0.03 -2.11 16 10 H 0.12 2.50 8.14 -2.39 -0.02 2.49 16 11 C 0.52 16.02 7.13 87.66 0.63 16.65 16 12 O -0.58 -21.73 15.95 -3.01 -0.05 -21.77 16 13 N -0.70 -22.99 5.43 -466.78 -2.53 -25.53 16 14 C 0.12 4.40 6.15 85.63 0.53 4.93 16 15 C 0.43 19.96 7.85 87.66 0.69 20.64 16 16 O -0.62 -31.95 15.24 -3.08 -0.05 -32.00 16 17 N -0.56 -28.15 5.29 -306.99 -1.62 -29.77 16 18 C -0.34 -18.50 9.68 84.04 0.81 -17.69 16 19 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 21 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 22 Si 1.00 41.70 29.55 68.60 2.03 43.73 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 C 0.08 2.00 4.43 86.75 0.38 2.38 16 27 N -0.53 -10.23 4.84 -864.15 -4.18 -14.42 16 28 C 0.04 0.70 6.24 87.02 0.54 1.24 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.92 8.00 -2.38 -0.02 0.90 16 33 H 0.08 0.83 7.74 -2.39 -0.02 0.82 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 37 H 0.08 1.55 7.69 -2.39 -0.02 1.53 16 38 H 0.41 13.23 6.93 -92.71 -0.64 12.58 16 39 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.40 19.30 7.90 -92.70 -0.73 18.56 16 42 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.03 0.72 7.88 -2.39 -0.02 0.70 16 45 H 0.04 0.64 7.88 -2.39 -0.02 0.62 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -64.75 367.64 -1.25 -66.00 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.39 Total: 41.77 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 5.26 Total: 20.42 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -8.06 Total: -118.16 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.09 Total: -53.77 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -64.75 -1.25 -66.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352200140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.089 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds