Wall clock time and date at job start Tue Mar 31 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46741 * 2 1 4 4 O 1.21280 * 120.00041 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.46885 * 120.46611 * 180.02562 * 5 3 2 7 7 C 1.53348 * 108.74619 * 124.35085 * 6 5 3 8 8 C 1.52567 * 109.12702 * 52.27860 * 7 6 5 9 9 C 1.52981 * 114.03140 * 75.40199 * 8 7 6 10 10 N 1.47565 * 87.80358 * 139.45979 * 9 8 7 11 11 C 1.46898 * 111.00370 * 221.69712 * 10 9 8 12 12 C 1.50696 * 109.47176 * 170.00207 * 11 10 9 13 13 O 1.21288 * 120.00279 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99735 * 179.97438 * 12 11 10 15 15 C 1.37105 * 119.99904 * 179.97438 * 14 12 11 16 16 H 1.07991 * 119.99780 * 0.02562 * 15 14 12 17 17 C 1.38954 * 119.99815 * 179.72596 * 15 14 12 18 18 N 1.31414 * 119.99692 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00158 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46896 * 89.99806 * 19 17 15 21 21 H 1.48499 * 109.47039 * 209.99966 * 19 17 15 22 22 H 1.48502 * 109.46906 * 329.99872 * 19 17 15 23 23 C 1.47578 * 87.94858 * 333.43822 * 10 9 8 24 24 C 1.52562 * 113.40224 * 302.64177 * 8 7 6 25 25 C 1.46884 * 120.46091 * 359.97438 * 5 3 2 26 26 H 1.08996 * 109.47121 * 60.00256 * 1 2 3 27 27 H 1.09006 * 109.46593 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47283 * 299.99851 * 1 2 3 29 29 H 1.08997 * 109.47283 * 240.00149 * 2 1 3 30 30 H 1.08996 * 109.47121 * 119.99744 * 2 1 3 31 31 H 1.09005 * 109.59122 * 4.57249 * 6 5 3 32 32 H 1.09000 * 109.58955 * 244.12763 * 6 5 3 33 33 H 1.08999 * 109.52839 * 292.38200 * 7 6 5 34 34 H 1.09004 * 109.53025 * 172.17109 * 7 6 5 35 35 H 1.09007 * 113.49594 * 24.72624 * 9 8 7 36 36 H 1.09002 * 113.55383 * 254.20986 * 9 8 7 37 37 H 1.09000 * 109.46741 * 50.00148 * 11 10 9 38 38 H 1.09002 * 109.46898 * 290.00139 * 11 10 9 39 39 H 0.97005 * 120.00189 * 0.02562 * 14 12 11 40 40 H 0.96995 * 119.99830 * 180.02562 * 18 17 15 41 41 H 1.08991 * 113.49833 * 141.30453 * 23 10 9 42 42 H 1.09001 * 113.49028 * 271.83313 * 23 10 9 43 43 H 1.09000 * 109.52639 * 177.24442 * 24 8 7 44 44 H 1.09000 * 109.53313 * 297.44898 * 24 8 7 45 45 H 1.09004 * 109.59629 * 355.42184 * 25 5 3 46 46 H 1.08999 * 109.59169 * 115.86470 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6673 -0.0005 6 6 3.8581 3.0481 0.0000 7 6 4.7970 3.2313 1.1985 8 6 5.8535 2.1308 1.1788 9 6 6.9458 2.3345 0.1274 10 7 7.9203 1.8651 1.1312 11 6 9.1426 2.6794 1.0994 12 6 10.0055 2.3366 2.2863 13 8 9.6388 1.4962 3.0803 14 7 11.1854 2.9630 2.4650 15 6 11.9703 2.6515 3.5451 16 1 11.6433 1.9039 4.2525 17 6 13.1894 3.2934 3.7262 18 7 13.9419 2.9944 4.7612 19 14 13.7585 4.5810 2.4984 20 1 13.2732 5.9187 2.9233 21 1 15.2423 4.5881 2.4405 22 1 13.2122 4.2599 1.1553 23 6 6.9939 2.3423 2.1761 24 6 5.2634 0.7240 1.1973 25 6 4.3209 0.5586 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0204 3.7407 0.0827 32 1 4.4035 3.2394 -0.9241 33 1 4.2236 3.1695 2.1234 34 1 5.2837 4.2046 1.1348 35 1 7.0846 3.3772 -0.1587 36 1 6.8527 1.6704 -0.7319 37 1 8.8764 3.7357 1.1367 38 1 9.6914 2.4751 0.1801 39 1 11.4789 3.6348 1.8297 40 1 14.7927 3.4427 4.8878 41 1 6.9406 1.6841 3.0432 42 1 7.1458 3.3870 2.4474 43 1 6.0673 -0.0092 1.1325 44 1 4.7064 0.5746 2.1222 45 1 3.7881 -0.3888 0.0819 46 1 4.8984 0.5763 -0.9248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:00 Heat of formation + Delta-G solvation = -32.192062 kcal Electronic energy + Delta-G solvation = -25917.277677 eV Core-core repulsion = 22229.024845 eV Total energy + Delta-G solvation = -3688.252833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27755 -39.86452 -38.15006 -36.49254 -33.99261 -33.40845 -32.31624 -31.65459 -31.34463 -28.77113 -26.32804 -25.55054 -24.81722 -23.66339 -23.29563 -21.66295 -19.74248 -19.37768 -18.40947 -18.12089 -17.26505 -16.15633 -16.12706 -16.02540 -15.72668 -15.22373 -14.87682 -14.60527 -14.48533 -14.18657 -13.97880 -13.49895 -13.15762 -13.10677 -13.00076 -12.79701 -12.53234 -12.41477 -12.19468 -12.13773 -12.02059 -11.83836 -11.50043 -11.42891 -11.40934 -11.16406 -10.78051 -10.61597 -10.46070 -10.28625 -9.99323 -9.97734 -9.58377 -8.89081 -8.78056 -8.38265 -8.19582 -6.32817 -3.84292 2.38920 2.73662 3.00619 3.04468 3.13097 3.71418 3.98173 4.08378 4.14510 4.21912 4.41818 4.61231 4.70207 4.75866 4.79837 4.83959 4.92118 5.03971 5.11747 5.18001 5.24337 5.29873 5.36127 5.39853 5.44755 5.48761 5.55541 5.58904 5.61177 5.63846 5.65687 5.78869 5.89141 5.90282 5.94719 6.00561 6.07866 6.19897 6.33797 6.48694 7.11841 7.13868 7.56220 7.93411 8.12188 8.58078 8.93273 9.40498 9.81162 10.80329 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.041522 B = 0.002450 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.175765 B =11424.521446 C =11702.979252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.513 3.487 4 O -0.547 6.547 5 N -0.611 5.611 6 C 0.114 3.886 7 C -0.118 4.118 8 C -0.089 4.089 9 C 0.002 3.998 10 N -0.441 5.441 11 C 0.006 3.994 12 C 0.453 3.547 13 O -0.560 6.560 14 N -0.592 5.592 15 C -0.304 4.304 16 H 0.119 0.881 17 C 0.041 3.959 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.270 1.270 23 C 0.023 3.977 24 C -0.104 4.104 25 C 0.107 3.893 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.153 -1.936 -13.563 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.301 3.699 4 O -0.424 6.424 5 N -0.345 5.345 6 C -0.009 4.009 7 C -0.156 4.156 8 C -0.089 4.089 9 C -0.127 4.127 10 N -0.163 5.163 11 C -0.126 4.126 12 C 0.239 3.761 13 O -0.441 6.441 14 N -0.232 5.232 15 C -0.433 4.433 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.521 5.521 19 Si 0.706 3.294 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.195 1.195 23 C -0.106 4.106 24 C -0.142 4.142 25 C -0.015 4.015 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.320 -2.678 -12.898 25.061 hybrid contribution 0.893 2.005 -0.872 2.362 sum -20.427 -0.673 -13.770 24.644 Atomic orbital electron populations 1.21536 0.93080 1.01552 1.03288 1.21673 0.98541 0.93990 1.04270 1.20815 0.81678 0.91906 0.75471 1.90681 1.54880 1.46683 1.50188 1.48153 1.05616 1.07486 1.73234 1.21565 0.98094 0.83056 0.98147 1.21823 0.96719 0.98219 0.98876 1.21619 0.93515 0.95840 0.97975 1.23920 0.92282 0.99762 0.96707 1.68819 1.00050 1.43763 1.03635 1.22522 0.94302 0.96065 0.99706 1.19575 0.83081 0.85448 0.88014 1.90561 1.72682 1.34464 1.46436 1.42227 1.18448 1.37318 1.25192 1.19421 0.99230 1.22658 1.01969 0.86309 1.25045 0.96067 0.98122 0.96992 1.69623 1.12455 1.42174 1.27882 0.86671 0.79427 0.82217 0.81068 1.19671 1.20140 1.19520 1.23708 0.90089 1.00059 0.96779 1.21555 0.98890 0.95797 0.97938 1.21827 0.91033 0.89304 0.99373 0.92079 0.92084 0.92016 0.88952 0.88797 0.89055 0.91482 0.91069 0.90579 0.91547 0.89888 0.92709 0.89077 0.79760 0.91615 0.89037 0.91612 0.88859 0.91184 0.89484 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.98 4.75 -27.88 -0.13 -1.11 16 3 C 0.51 5.22 7.69 -10.98 -0.08 5.14 16 4 O -0.55 -7.61 15.37 5.56 0.09 -7.53 16 5 N -0.61 -5.47 2.94 -172.66 -0.51 -5.97 16 6 C 0.11 1.03 6.34 -3.65 -0.02 1.00 16 7 C -0.12 -1.08 5.30 -26.77 -0.14 -1.22 16 8 C -0.09 -0.91 0.83 -154.98 -0.13 -1.04 16 9 C 0.00 0.03 6.64 -7.29 -0.05 -0.02 16 10 N -0.44 -6.62 5.83 -246.02 -1.43 -8.05 16 11 C 0.01 0.10 5.31 -4.98 -0.03 0.08 16 12 C 0.45 10.22 7.62 -10.99 -0.08 10.14 16 13 O -0.56 -14.91 15.34 5.55 0.09 -14.82 16 14 N -0.59 -14.07 5.09 -10.96 -0.06 -14.12 16 15 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 16 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 17 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 18 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 19 Si 0.88 19.30 27.73 -169.99 -4.71 14.58 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 23 C 0.02 0.32 5.87 -7.30 -0.04 0.27 16 24 C -0.10 -0.95 5.27 -26.79 -0.14 -1.09 16 25 C 0.11 0.77 6.24 -3.67 -0.02 0.74 16 26 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.09 0.45 7.90 -51.93 -0.41 0.04 16 30 H 0.09 0.51 7.72 -51.93 -0.40 0.11 16 31 H 0.09 0.94 6.98 -51.93 -0.36 0.58 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.07 0.64 7.69 -51.93 -0.40 0.24 16 36 H 0.08 0.80 7.52 -51.93 -0.39 0.41 16 37 H 0.05 0.78 7.57 -51.93 -0.39 0.38 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 42 H 0.07 0.92 7.66 -51.93 -0.40 0.53 16 43 H 0.09 0.96 7.95 -51.93 -0.41 0.55 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.45 5.89 -51.93 -0.31 0.15 16 46 H 0.07 0.48 7.59 -51.93 -0.39 0.08 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -34.52 362.74 -8.54 -43.06 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.45 Total: 7.78 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.78 Total: 4.55 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -1.22 Total: -53.09 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.17 Total: -22.35 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.52 -8.54 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.868 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds