Wall clock time and date at job start Tue Mar 31 2020 05:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46741 * 2 1 4 4 O 1.21280 * 120.00041 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.46885 * 120.46611 * 180.02562 * 5 3 2 7 7 C 1.53348 * 108.74619 * 124.35085 * 6 5 3 8 8 C 1.52567 * 109.12702 * 52.27860 * 7 6 5 9 9 C 1.52981 * 114.03140 * 75.40199 * 8 7 6 10 10 N 1.47565 * 87.80358 * 139.45979 * 9 8 7 11 11 C 1.46898 * 111.00370 * 221.69712 * 10 9 8 12 12 C 1.50696 * 109.47176 * 170.00207 * 11 10 9 13 13 O 1.21288 * 120.00279 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99735 * 179.97438 * 12 11 10 15 15 C 1.37105 * 119.99904 * 179.97438 * 14 12 11 16 16 H 1.07991 * 119.99780 * 0.02562 * 15 14 12 17 17 C 1.38954 * 119.99815 * 179.72596 * 15 14 12 18 18 N 1.31414 * 119.99692 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00158 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46896 * 89.99806 * 19 17 15 21 21 H 1.48499 * 109.47039 * 209.99966 * 19 17 15 22 22 H 1.48502 * 109.46906 * 329.99872 * 19 17 15 23 23 C 1.47578 * 87.94858 * 333.43822 * 10 9 8 24 24 C 1.52562 * 113.40224 * 302.64177 * 8 7 6 25 25 C 1.46884 * 120.46091 * 359.97438 * 5 3 2 26 26 H 1.08996 * 109.47121 * 60.00256 * 1 2 3 27 27 H 1.09006 * 109.46593 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47283 * 299.99851 * 1 2 3 29 29 H 1.08997 * 109.47283 * 240.00149 * 2 1 3 30 30 H 1.08996 * 109.47121 * 119.99744 * 2 1 3 31 31 H 1.09005 * 109.59122 * 4.57249 * 6 5 3 32 32 H 1.09000 * 109.58955 * 244.12763 * 6 5 3 33 33 H 1.08999 * 109.52839 * 292.38200 * 7 6 5 34 34 H 1.09004 * 109.53025 * 172.17109 * 7 6 5 35 35 H 1.09007 * 113.49594 * 24.72624 * 9 8 7 36 36 H 1.09002 * 113.55383 * 254.20986 * 9 8 7 37 37 H 1.09000 * 109.46741 * 50.00148 * 11 10 9 38 38 H 1.09002 * 109.46898 * 290.00139 * 11 10 9 39 39 H 0.97005 * 120.00189 * 0.02562 * 14 12 11 40 40 H 0.96995 * 119.99830 * 180.02562 * 18 17 15 41 41 H 1.08991 * 113.49833 * 141.30453 * 23 10 9 42 42 H 1.09001 * 113.49028 * 271.83313 * 23 10 9 43 43 H 1.09000 * 109.52639 * 177.24442 * 24 8 7 44 44 H 1.09000 * 109.53313 * 297.44898 * 24 8 7 45 45 H 1.09004 * 109.59629 * 355.42184 * 25 5 3 46 46 H 1.08999 * 109.59169 * 115.86470 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6673 -0.0005 6 6 3.8581 3.0481 0.0000 7 6 4.7970 3.2313 1.1985 8 6 5.8535 2.1308 1.1788 9 6 6.9458 2.3345 0.1274 10 7 7.9203 1.8651 1.1312 11 6 9.1426 2.6794 1.0994 12 6 10.0055 2.3366 2.2863 13 8 9.6388 1.4962 3.0803 14 7 11.1854 2.9630 2.4650 15 6 11.9703 2.6515 3.5451 16 1 11.6433 1.9039 4.2525 17 6 13.1894 3.2934 3.7262 18 7 13.9419 2.9944 4.7612 19 14 13.7585 4.5810 2.4984 20 1 13.2732 5.9187 2.9233 21 1 15.2423 4.5881 2.4405 22 1 13.2122 4.2599 1.1553 23 6 6.9939 2.3423 2.1761 24 6 5.2634 0.7240 1.1973 25 6 4.3209 0.5586 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0204 3.7407 0.0827 32 1 4.4035 3.2394 -0.9241 33 1 4.2236 3.1695 2.1234 34 1 5.2837 4.2046 1.1348 35 1 7.0846 3.3772 -0.1587 36 1 6.8527 1.6704 -0.7319 37 1 8.8764 3.7357 1.1367 38 1 9.6914 2.4751 0.1801 39 1 11.4789 3.6348 1.8297 40 1 14.7927 3.4427 4.8878 41 1 6.9406 1.6841 3.0432 42 1 7.1458 3.3870 2.4474 43 1 6.0673 -0.0092 1.1325 44 1 4.7064 0.5746 2.1222 45 1 3.7881 -0.3888 0.0819 46 1 4.8984 0.5763 -0.9248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753670430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:59 Heat of formation + Delta-G solvation = -59.363468 kcal Electronic energy + Delta-G solvation = -25918.455918 eV Core-core repulsion = 22229.024845 eV Total energy + Delta-G solvation = -3689.431073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20432 -40.77639 -39.85480 -37.39495 -35.98693 -34.10267 -33.78465 -33.16312 -32.03648 -29.96492 -27.43823 -26.76372 -25.96284 -24.54601 -24.15937 -22.66426 -21.25073 -20.48869 -20.21720 -18.97173 -18.04563 -17.80035 -16.99182 -16.82130 -16.78557 -16.62114 -16.23568 -15.84292 -15.40159 -15.13217 -14.99059 -14.87904 -14.51636 -14.27069 -14.17915 -13.85257 -13.78019 -13.44716 -13.20848 -13.03072 -12.89853 -12.86844 -12.57330 -12.44341 -12.42780 -12.15095 -12.01240 -11.99160 -11.58789 -11.52733 -11.37731 -11.19304 -10.74493 -10.41846 -10.26182 -9.74556 -9.56511 -8.42635 -6.03623 1.28743 1.34127 1.43355 1.65502 1.94606 2.07743 2.21692 2.71303 3.12891 3.18863 3.32960 3.60123 3.65970 3.96852 4.02059 4.12638 4.15940 4.21295 4.27387 4.28178 4.35853 4.40913 4.47619 4.53137 4.61609 4.65586 4.67353 4.80829 4.83800 4.86695 4.92845 5.00515 5.05962 5.08263 5.12961 5.28450 5.33751 5.38256 5.39487 5.52602 5.63113 5.91172 6.08016 6.44579 6.58242 6.86935 7.20780 7.38236 7.95687 8.75085 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.041522 B = 0.002450 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.175765 B =11424.521446 C =11702.979252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.504 3.496 4 O -0.593 6.593 5 N -0.610 5.610 6 C 0.115 3.885 7 C -0.110 4.110 8 C -0.072 4.072 9 C 0.014 3.986 10 N -0.469 5.469 11 C 0.018 3.982 12 C 0.451 3.549 13 O -0.610 6.610 14 N -0.593 5.593 15 C -0.327 4.327 16 H 0.053 0.947 17 C -0.017 4.017 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.231 1.231 23 C 0.013 3.987 24 C -0.103 4.103 25 C 0.112 3.888 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.389 0.611 40 H 0.279 0.721 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.590 -0.908 -17.504 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.295 3.705 4 O -0.474 6.474 5 N -0.343 5.343 6 C -0.008 4.008 7 C -0.148 4.148 8 C -0.073 4.073 9 C -0.114 4.114 10 N -0.191 5.191 11 C -0.114 4.114 12 C 0.239 3.761 13 O -0.494 6.494 14 N -0.235 5.235 15 C -0.457 4.457 16 H 0.072 0.928 17 C -0.216 4.216 18 N -0.575 5.575 19 Si 0.786 3.214 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.154 1.154 23 C -0.116 4.116 24 C -0.141 4.141 25 C -0.010 4.010 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.225 0.775 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.130 0.870 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.762 -1.666 -16.864 27.582 hybrid contribution 0.980 1.575 0.492 1.919 sum -20.783 -0.091 -16.371 26.456 Atomic orbital electron populations 1.21534 0.93649 1.02523 1.01736 1.21747 0.98043 0.91952 1.06295 1.21478 0.81663 0.92890 0.74501 1.90662 1.56029 1.48306 1.52396 1.48266 1.05688 1.07927 1.72370 1.21549 0.97491 0.83089 0.98641 1.21753 0.96254 0.98335 0.98499 1.21532 0.92950 0.96811 0.96031 1.23985 0.89902 1.01345 0.96179 1.68813 1.00383 1.44512 1.05409 1.22483 0.93961 0.97954 0.96952 1.20898 0.82721 0.83612 0.88906 1.90543 1.73673 1.36444 1.48731 1.42063 1.18632 1.38282 1.24536 1.18981 1.00985 1.22599 1.03111 0.92845 1.26146 0.95293 1.00673 0.99458 1.69808 1.13195 1.44010 1.30531 0.85351 0.78696 0.78192 0.79189 1.18141 1.20001 1.15402 1.23715 0.92484 0.98986 0.96425 1.21529 0.98927 0.94812 0.98852 1.21942 0.90547 0.89708 0.98785 0.93388 0.89764 0.93881 0.86283 0.87055 0.90677 0.89597 0.92449 0.89462 0.89451 0.87920 0.89572 0.86251 0.77523 0.91149 0.92751 0.91773 0.89956 0.91986 0.87022 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.20 71.98 0.66 -1.09 16 2 C -0.14 -1.54 4.75 29.85 0.14 -1.39 16 3 C 0.50 9.50 7.69 87.66 0.67 10.17 16 4 O -0.59 -16.44 15.37 -3.03 -0.05 -16.48 16 5 N -0.61 -9.46 2.94 -818.56 -2.41 -11.87 16 6 C 0.11 1.82 6.34 86.42 0.55 2.37 16 7 C -0.11 -1.81 5.30 30.57 0.16 -1.65 16 8 C -0.07 -1.35 0.83 -52.49 -0.04 -1.39 16 9 C 0.01 0.24 6.64 83.69 0.56 0.80 16 10 N -0.47 -13.16 5.83 -932.28 -5.43 -18.60 16 11 C 0.02 0.54 5.31 85.56 0.45 0.99 16 12 C 0.45 20.33 7.62 87.66 0.67 21.00 16 13 O -0.61 -33.98 15.34 -3.05 -0.05 -34.02 16 14 N -0.59 -27.98 5.09 -306.99 -1.56 -29.54 16 15 C -0.33 -19.27 10.16 84.04 0.85 -18.41 16 16 H 0.05 3.76 7.39 -2.92 -0.02 3.74 16 17 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 18 N -0.93 -56.54 13.96 21.66 0.30 -56.24 16 19 Si 0.97 38.62 27.73 68.60 1.90 40.52 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 23 C 0.01 0.37 5.87 83.68 0.49 0.86 16 24 C -0.10 -1.71 5.27 30.55 0.16 -1.55 16 25 C 0.11 1.22 6.24 86.41 0.54 1.76 16 26 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 27 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.12 0.69 7.90 -2.39 -0.02 0.68 16 30 H 0.11 0.86 7.72 -2.39 -0.02 0.84 16 31 H 0.07 1.49 6.98 -2.38 -0.02 1.47 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.26 8.10 -2.38 -0.02 1.24 16 35 H 0.09 1.22 7.69 -2.38 -0.02 1.21 16 36 H 0.10 1.46 7.52 -2.39 -0.02 1.44 16 37 H 0.09 2.06 7.57 -2.39 -0.02 2.05 16 38 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.39 15.10 5.76 -92.70 -0.53 14.56 16 40 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 42 H 0.06 1.77 7.66 -2.39 -0.02 1.75 16 43 H 0.08 1.60 7.95 -2.39 -0.02 1.58 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.11 0.71 5.89 -2.39 -0.01 0.69 16 46 H 0.09 0.76 7.59 -2.39 -0.02 0.74 16 Total: -1.00 -83.31 362.74 -0.57 -83.88 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.38 Total: 30.39 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.34 Total: 11.97 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -9.10 Total: -116.25 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -0.09 Total: -50.51 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -83.31 -0.57 -83.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.519 kcal (2) G-P(sol) polarization free energy of solvation -83.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds