Wall clock time and date at job start Tue Mar 31 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47588 * 2 1 4 4 C 1.53001 * 109.47167 * 239.99277 * 2 1 3 5 5 N 1.46503 * 109.47333 * 185.00109 * 4 2 1 6 6 C 1.46760 * 124.34462 * 90.00453 * 5 4 2 7 7 C 1.54482 * 105.47128 * 197.01658 * 6 5 4 8 8 C 1.54632 * 101.76379 * 334.58462 * 7 6 5 9 9 C 1.34417 * 124.35119 * 269.70505 * 5 4 2 10 10 O 1.21282 * 124.93851 * 359.57488 * 9 5 4 11 11 N 1.46502 * 109.47150 * 120.00079 * 2 1 3 12 12 C 1.34781 * 119.99817 * 275.00196 * 11 2 1 13 13 O 1.21591 * 119.99797 * 5.02780 * 12 11 2 14 14 N 1.34777 * 120.00192 * 185.03541 * 12 11 2 15 15 C 1.46493 * 120.00143 * 185.06629 * 14 12 11 16 16 C 1.52995 * 109.47209 * 184.22109 * 15 14 12 17 17 C 1.50703 * 115.55058 * 294.91614 * 16 15 14 18 18 H 1.07999 * 119.99766 * 114.88473 * 17 16 15 19 19 C 1.37871 * 120.00194 * 294.60820 * 17 16 15 20 20 N 1.31511 * 120.00523 * 174.41317 * 19 17 16 21 21 Si 1.86806 * 119.99898 * 354.42011 * 19 17 16 22 22 H 1.48504 * 109.47265 * 93.89629 * 21 19 17 23 23 H 1.48494 * 109.47164 * 213.89689 * 21 19 17 24 24 H 1.48500 * 109.47239 * 333.89968 * 21 19 17 25 25 C 1.53006 * 117.49910 * 80.58547 * 16 15 14 26 26 C 1.53006 * 117.50021 * 149.24649 * 16 15 14 27 27 H 1.09003 * 109.47168 * 300.00261 * 1 2 3 28 28 H 1.08997 * 109.46935 * 60.00213 * 1 2 3 29 29 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47513 * 305.00999 * 4 2 1 31 31 H 1.09000 * 109.46686 * 65.00521 * 4 2 1 32 32 H 1.09005 * 110.24932 * 316.01638 * 6 5 4 33 33 H 1.09004 * 110.24996 * 77.93178 * 6 5 4 34 34 H 1.09001 * 110.97015 * 92.70576 * 7 6 5 35 35 H 1.08997 * 110.96826 * 216.46659 * 7 6 5 36 36 H 1.08999 * 110.48471 * 143.47399 * 8 7 6 37 37 H 1.08998 * 110.48634 * 265.98497 * 8 7 6 38 38 H 0.97003 * 120.00316 * 94.99416 * 11 2 1 39 39 H 0.97003 * 119.99889 * 5.06737 * 14 12 11 40 40 H 1.08996 * 109.47240 * 64.22184 * 15 14 12 41 41 H 1.09004 * 109.46977 * 304.22265 * 15 14 12 42 42 H 0.96997 * 120.00470 * 180.02562 * 20 19 17 43 43 H 1.08995 * 117.49833 * 215.00172 * 25 16 15 44 44 H 1.08996 * 117.49834 * 0.02562 * 25 16 15 45 45 H 1.08995 * 117.49749 * 359.97438 * 26 16 15 46 46 H 1.09001 * 117.50068 * 144.97319 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8266 -1.1905 6 6 4.2256 -1.9490 -0.5842 7 6 5.6663 -1.4371 -0.3633 8 6 5.7779 -0.3343 -1.4414 9 6 4.3472 0.0897 -1.6901 10 8 4.0130 1.1093 -2.2555 11 7 2.0183 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3572 13 8 1.7724 1.1358 2.4361 14 7 2.6910 -0.6250 3.4307 15 6 2.7298 0.0665 4.7215 16 6 3.4865 -0.7917 5.7372 17 6 2.8357 -2.1036 6.0927 18 1 3.3186 -3.0339 5.8326 19 6 1.6265 -2.1162 6.7550 20 7 1.0052 -3.2556 6.9680 21 14 0.8706 -0.5148 7.3497 22 1 -0.0728 -0.0017 6.3240 23 1 0.1389 -0.7544 8.6195 24 1 1.9447 0.4848 7.5784 25 6 5.0155 -0.7493 5.6982 26 6 4.2593 -0.0649 6.8398 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6052 -1.7199 -1.2951 31 1 1.7516 -0.1585 -2.1369 32 1 3.7717 -2.2210 0.3688 33 1 4.2275 -2.8054 -1.2586 34 1 5.7826 -1.0186 0.6364 35 1 6.3933 -2.2299 -0.5396 36 1 6.3680 0.5036 -1.0704 37 1 6.2189 -0.7359 -2.3537 38 1 2.2489 -1.6318 1.1527 39 1 3.0568 -1.5197 3.3485 40 1 1.7124 0.2347 5.0744 41 1 3.2372 1.0243 4.6054 42 1 0.1544 -3.2644 7.4337 43 1 5.5506 -1.6702 5.9296 44 1 5.4822 -0.1097 4.9492 45 1 4.2290 1.0247 6.8412 46 1 4.2967 -0.5354 7.8223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430428708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:10 Heat of formation + Delta-G solvation = -38.814253 kcal Electronic energy + Delta-G solvation = -26723.230192 eV Core-core repulsion = 23034.690199 eV Total energy + Delta-G solvation = -3688.539992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68437 -39.49491 -37.30801 -36.63002 -35.66223 -33.41265 -32.46166 -32.20807 -30.45360 -27.77915 -26.66698 -26.39542 -25.04599 -22.23030 -21.89783 -21.54819 -20.31214 -19.62258 -19.32063 -17.92259 -16.96055 -16.86962 -16.48559 -16.10579 -15.23638 -15.18907 -14.67027 -14.33131 -14.15547 -14.01445 -13.96023 -13.63879 -13.22458 -13.11663 -12.91717 -12.80090 -12.57261 -12.29746 -12.24994 -12.01025 -11.93998 -11.67223 -11.28253 -11.12598 -11.08253 -10.73151 -10.61893 -10.27453 -9.94354 -9.80580 -9.51797 -9.17550 -9.10011 -8.83064 -8.72831 -8.53823 -8.15728 -6.20597 -4.23398 2.42953 2.76028 3.10242 3.28681 3.38167 3.44379 3.69562 4.12465 4.23611 4.37213 4.50141 4.60658 4.67960 4.78776 4.89421 4.99634 5.17194 5.17304 5.21960 5.28113 5.38379 5.46653 5.47308 5.58445 5.67195 5.69960 5.76157 5.96327 5.99586 6.12026 6.17851 6.25781 6.37877 6.42346 6.49272 6.69443 6.72699 6.92422 6.94074 7.05485 7.18647 7.41057 7.64970 8.01024 8.37641 8.54459 8.80142 9.09843 9.43562 10.90250 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.004068 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.918272 B = 6881.676570 C = 7556.158003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.089 0.911 4 C 0.118 3.882 5 N -0.615 5.615 6 C 0.101 3.899 7 C -0.132 4.132 8 C -0.155 4.155 9 C 0.517 3.483 10 O -0.534 6.534 11 N -0.744 5.744 12 C 0.701 3.299 13 O -0.602 6.602 14 N -0.719 5.719 15 C 0.174 3.826 16 C -0.018 4.018 17 C -0.489 4.489 18 H 0.077 0.923 19 C 0.084 3.916 20 N -0.893 5.893 21 Si 0.866 3.134 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.248 1.248 25 C -0.180 4.180 26 C -0.184 4.184 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.390 0.610 39 H 0.400 0.600 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.265 0.735 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -0.111 -16.263 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.004 4.004 5 N -0.349 5.349 6 C -0.022 4.022 7 C -0.170 4.170 8 C -0.195 4.195 9 C 0.305 3.695 10 O -0.410 6.410 11 N -0.402 5.402 12 C 0.401 3.599 13 O -0.481 6.481 14 N -0.372 5.372 15 C 0.050 3.950 16 C -0.019 4.019 17 C -0.526 4.526 18 H 0.095 0.905 19 C -0.119 4.119 20 N -0.530 5.530 21 Si 0.693 3.307 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.172 1.172 25 C -0.217 4.217 26 C -0.223 4.223 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.225 0.775 39 H 0.235 0.765 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.879 1.410 -16.380 17.460 hybrid contribution -0.386 -0.219 0.511 0.677 sum 5.493 1.191 -15.869 16.835 Atomic orbital electron populations 1.22151 0.94827 1.02223 1.02952 1.21163 0.94083 0.97776 0.83048 0.89300 1.21782 0.78403 1.01872 0.98362 1.48197 1.05880 1.22392 1.58401 1.22168 0.92393 0.89004 0.98654 1.22593 0.95936 0.98539 0.99890 1.22316 0.95153 1.00911 1.01116 1.20939 0.88687 0.82550 0.77312 1.90728 1.82204 1.25121 1.42992 1.45193 1.72768 1.13085 1.09130 1.16017 0.78875 0.84788 0.80249 1.90875 1.56659 1.16663 1.83945 1.44972 1.63264 1.20420 1.08547 1.20904 0.99737 0.93238 0.81147 1.19628 0.89962 0.96944 0.95386 1.20203 1.04736 0.89687 1.37938 0.90494 1.24895 0.96305 0.95969 0.94758 1.69883 1.16102 1.25714 1.41281 0.87035 0.80210 0.85186 0.78243 1.20446 1.21865 1.17198 1.22785 0.95857 1.01719 1.01312 1.23028 1.07021 0.97247 0.94983 0.91212 0.91819 0.92381 0.89664 0.88548 0.90298 0.90869 0.89592 0.89035 0.88085 0.87994 0.77492 0.76521 0.92932 0.93515 0.92482 0.89683 0.90956 0.91105 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.15 0.35 -1.56 16 2 C 0.15 1.84 2.84 -67.93 -0.19 1.64 16 3 H 0.09 1.43 7.65 -51.93 -0.40 1.03 16 4 C 0.12 1.12 5.51 -4.04 -0.02 1.10 16 5 N -0.61 -6.05 2.75 -172.41 -0.47 -6.52 16 6 C 0.10 0.71 7.07 -3.12 -0.02 0.69 16 7 C -0.13 -0.87 7.18 -25.10 -0.18 -1.05 16 8 C -0.15 -1.26 6.86 -26.74 -0.18 -1.45 16 9 C 0.52 6.25 8.02 -10.86 -0.09 6.16 16 10 O -0.53 -8.70 17.59 5.56 0.10 -8.60 16 11 N -0.74 -10.15 4.51 -58.68 -0.26 -10.42 16 12 C 0.70 12.99 8.51 -86.91 -0.74 12.25 16 13 O -0.60 -13.60 16.00 5.29 0.08 -13.51 16 14 N -0.72 -13.44 5.48 -65.23 -0.36 -13.80 16 15 C 0.17 3.71 5.15 -4.05 -0.02 3.69 16 16 C -0.02 -0.39 0.84 -155.66 -0.13 -0.52 16 17 C -0.49 -12.44 9.15 -34.44 -0.32 -12.76 16 18 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 19 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 20 N -0.89 -25.82 13.96 55.43 0.77 -25.04 16 21 Si 0.87 21.14 24.96 -169.99 -4.24 16.89 16 22 H -0.28 -6.99 7.04 56.52 0.40 -6.60 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.25 -5.72 5.72 56.52 0.32 -5.39 16 25 C -0.18 -3.33 9.96 -26.69 -0.27 -3.60 16 26 C -0.18 -3.71 8.03 -26.69 -0.21 -3.92 16 27 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.93 7.92 -51.93 -0.41 0.52 16 32 H 0.08 0.56 5.95 -51.93 -0.31 0.25 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.39 4.31 6.53 -40.82 -0.27 4.04 16 39 H 0.40 6.81 8.36 -40.82 -0.34 6.47 16 40 H 0.05 1.26 5.06 -51.93 -0.26 0.99 16 41 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -34.08 370.90 -8.45 -42.54 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.54 Total: 10.00 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.12 Total: 2.88 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.32 Total: -55.78 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.18 Total: -22.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.24 Total: 16.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.08 -8.45 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430428708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.724 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds