Wall clock time and date at job start Tue Mar 31 2020 04:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47588 * 2 1 4 4 C 1.53001 * 109.47167 * 239.99277 * 2 1 3 5 5 N 1.46503 * 109.47333 * 185.00109 * 4 2 1 6 6 C 1.46760 * 124.34462 * 90.00453 * 5 4 2 7 7 C 1.54482 * 105.47128 * 197.01658 * 6 5 4 8 8 C 1.54632 * 101.76379 * 334.58462 * 7 6 5 9 9 C 1.34417 * 124.35119 * 269.70505 * 5 4 2 10 10 O 1.21282 * 124.93851 * 359.57488 * 9 5 4 11 11 N 1.46502 * 109.47150 * 120.00079 * 2 1 3 12 12 C 1.34781 * 119.99817 * 275.00196 * 11 2 1 13 13 O 1.21591 * 119.99797 * 5.02780 * 12 11 2 14 14 N 1.34777 * 120.00192 * 185.03541 * 12 11 2 15 15 C 1.46493 * 120.00143 * 185.06629 * 14 12 11 16 16 C 1.52995 * 109.47209 * 184.22109 * 15 14 12 17 17 C 1.50703 * 115.55058 * 294.91614 * 16 15 14 18 18 H 1.07999 * 119.99766 * 114.88473 * 17 16 15 19 19 C 1.37871 * 120.00194 * 294.60820 * 17 16 15 20 20 N 1.31511 * 120.00523 * 174.41317 * 19 17 16 21 21 Si 1.86806 * 119.99898 * 354.42011 * 19 17 16 22 22 H 1.48504 * 109.47265 * 93.89629 * 21 19 17 23 23 H 1.48494 * 109.47164 * 213.89689 * 21 19 17 24 24 H 1.48500 * 109.47239 * 333.89968 * 21 19 17 25 25 C 1.53006 * 117.49910 * 80.58547 * 16 15 14 26 26 C 1.53006 * 117.50021 * 149.24649 * 16 15 14 27 27 H 1.09003 * 109.47168 * 300.00261 * 1 2 3 28 28 H 1.08997 * 109.46935 * 60.00213 * 1 2 3 29 29 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47513 * 305.00999 * 4 2 1 31 31 H 1.09000 * 109.46686 * 65.00521 * 4 2 1 32 32 H 1.09005 * 110.24932 * 316.01638 * 6 5 4 33 33 H 1.09004 * 110.24996 * 77.93178 * 6 5 4 34 34 H 1.09001 * 110.97015 * 92.70576 * 7 6 5 35 35 H 1.08997 * 110.96826 * 216.46659 * 7 6 5 36 36 H 1.08999 * 110.48471 * 143.47399 * 8 7 6 37 37 H 1.08998 * 110.48634 * 265.98497 * 8 7 6 38 38 H 0.97003 * 120.00316 * 94.99416 * 11 2 1 39 39 H 0.97003 * 119.99889 * 5.06737 * 14 12 11 40 40 H 1.08996 * 109.47240 * 64.22184 * 15 14 12 41 41 H 1.09004 * 109.46977 * 304.22265 * 15 14 12 42 42 H 0.96997 * 120.00470 * 180.02562 * 20 19 17 43 43 H 1.08995 * 117.49833 * 215.00172 * 25 16 15 44 44 H 1.08996 * 117.49834 * 0.02562 * 25 16 15 45 45 H 1.08995 * 117.49749 * 359.97438 * 26 16 15 46 46 H 1.09001 * 117.50068 * 144.97319 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8266 -1.1905 6 6 4.2256 -1.9490 -0.5842 7 6 5.6663 -1.4371 -0.3633 8 6 5.7779 -0.3343 -1.4414 9 6 4.3472 0.0897 -1.6901 10 8 4.0130 1.1093 -2.2555 11 7 2.0183 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3572 13 8 1.7724 1.1358 2.4361 14 7 2.6910 -0.6250 3.4307 15 6 2.7298 0.0665 4.7215 16 6 3.4865 -0.7917 5.7372 17 6 2.8357 -2.1036 6.0927 18 1 3.3186 -3.0339 5.8326 19 6 1.6265 -2.1162 6.7550 20 7 1.0052 -3.2556 6.9680 21 14 0.8706 -0.5148 7.3497 22 1 -0.0728 -0.0017 6.3240 23 1 0.1389 -0.7544 8.6195 24 1 1.9447 0.4848 7.5784 25 6 5.0155 -0.7493 5.6982 26 6 4.2593 -0.0649 6.8398 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6052 -1.7199 -1.2951 31 1 1.7516 -0.1585 -2.1369 32 1 3.7717 -2.2210 0.3688 33 1 4.2275 -2.8054 -1.2586 34 1 5.7826 -1.0186 0.6364 35 1 6.3933 -2.2299 -0.5396 36 1 6.3680 0.5036 -1.0704 37 1 6.2189 -0.7359 -2.3537 38 1 2.2489 -1.6318 1.1527 39 1 3.0568 -1.5197 3.3485 40 1 1.7124 0.2347 5.0744 41 1 3.2372 1.0243 4.6054 42 1 0.1544 -3.2644 7.4337 43 1 5.5506 -1.6702 5.9296 44 1 5.4822 -0.1097 4.9492 45 1 4.2290 1.0247 6.8412 46 1 4.2967 -0.5354 7.8223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430428708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:09 Heat of formation + Delta-G solvation = -63.604900 kcal Electronic energy + Delta-G solvation = -26724.305195 eV Core-core repulsion = 23034.690199 eV Total energy + Delta-G solvation = -3689.614995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60519 -40.85283 -38.87967 -37.69934 -36.72016 -35.00948 -34.25365 -33.38093 -31.50793 -28.49356 -28.36297 -27.26807 -26.85324 -23.33673 -22.92544 -22.74616 -21.66680 -21.07808 -20.49059 -19.40314 -18.40011 -17.79223 -17.48801 -17.29792 -17.00724 -16.34289 -16.19043 -15.77659 -15.39448 -15.04811 -14.95031 -14.82523 -14.75790 -14.38064 -14.22272 -14.00320 -13.84118 -13.54114 -13.22359 -13.05091 -13.00244 -12.88740 -12.69057 -12.35850 -12.18253 -12.11114 -12.06361 -11.81979 -11.51091 -11.31027 -10.97010 -10.86164 -10.69225 -10.37897 -10.33455 -9.79258 -9.55746 -8.30446 -6.32836 1.31301 1.39010 1.48082 1.53945 1.72675 2.06052 2.21727 2.35199 2.97588 3.25018 3.44682 3.50594 3.65314 3.72548 4.02512 4.04682 4.08201 4.20057 4.28108 4.34227 4.47954 4.48792 4.54373 4.58701 4.66226 4.71656 4.75828 4.79731 4.90451 4.93640 4.97320 5.09570 5.10830 5.21491 5.24392 5.28361 5.52032 5.53222 5.58976 5.64228 5.70926 6.09143 6.12523 6.31424 6.73795 7.14015 7.18394 7.36060 7.64103 8.83460 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.004068 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.918272 B = 6881.676570 C = 7556.158003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 H 0.048 0.952 4 C 0.123 3.877 5 N -0.613 5.613 6 C 0.095 3.905 7 C -0.125 4.125 8 C -0.150 4.150 9 C 0.500 3.500 10 O -0.589 6.589 11 N -0.723 5.723 12 C 0.697 3.303 13 O -0.645 6.645 14 N -0.715 5.715 15 C 0.182 3.818 16 C -0.042 4.042 17 C -0.469 4.469 18 H 0.052 0.948 19 C 0.038 3.962 20 N -0.938 5.938 21 Si 0.909 3.091 22 H -0.294 1.294 23 H -0.296 1.296 24 H -0.226 1.226 25 C -0.149 4.149 26 C -0.185 4.185 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.407 0.593 39 H 0.409 0.591 40 H 0.023 0.977 41 H 0.052 0.948 42 H 0.263 0.737 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.343 -1.034 -17.338 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.067 0.933 4 C 0.000 4.000 5 N -0.346 5.346 6 C -0.027 4.027 7 C -0.162 4.162 8 C -0.190 4.190 9 C 0.290 3.710 10 O -0.470 6.470 11 N -0.381 5.381 12 C 0.397 3.603 13 O -0.528 6.528 14 N -0.369 5.369 15 C 0.057 3.943 16 C -0.044 4.044 17 C -0.507 4.507 18 H 0.070 0.930 19 C -0.160 4.160 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.221 1.221 23 H -0.223 1.223 24 H -0.148 1.148 25 C -0.186 4.186 26 C -0.223 4.223 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.245 0.755 39 H 0.245 0.755 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.617 0.421 -17.460 19.054 hybrid contribution -0.872 0.029 0.788 1.175 sum 6.745 0.450 -16.673 17.991 Atomic orbital electron populations 1.22091 0.94016 1.03323 1.02140 1.21216 0.94709 0.96152 0.83801 0.93338 1.21787 0.78629 1.03346 0.96195 1.48378 1.05985 1.22669 1.57519 1.22453 0.92210 0.88788 0.99265 1.22627 0.96445 0.98640 0.98509 1.22350 0.92491 1.01381 1.02731 1.21710 0.90659 0.82012 0.76608 1.90690 1.83332 1.27412 1.45556 1.45033 1.71482 1.13659 1.07941 1.16203 0.78538 0.84375 0.81154 1.90847 1.58371 1.18790 1.84787 1.44832 1.63463 1.20664 1.07928 1.20663 0.97981 0.93684 0.81965 1.19457 0.92058 0.95776 0.97063 1.20337 1.03915 0.90603 1.35802 0.93028 1.25466 0.97236 0.97723 0.95621 1.69985 1.16830 1.27422 1.43468 0.86343 0.79794 0.83201 0.76994 1.22127 1.22343 1.14794 1.22827 0.93260 1.01937 1.00540 1.23079 1.06316 0.98245 0.94677 0.94886 0.89790 0.90230 0.85988 0.88667 0.90127 0.87884 0.90898 0.85989 0.88557 0.85713 0.75534 0.75487 0.95858 0.92996 0.92749 0.89152 0.88423 0.89394 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.48 71.98 0.68 -2.90 16 2 C 0.15 3.64 2.84 44.99 0.13 3.76 16 3 H 0.05 1.62 7.65 -2.39 -0.02 1.60 16 4 C 0.12 2.09 5.51 86.38 0.48 2.57 16 5 N -0.61 -10.84 2.75 -817.97 -2.25 -13.09 16 6 C 0.09 1.01 7.07 86.83 0.61 1.62 16 7 C -0.12 -1.25 7.18 31.65 0.23 -1.02 16 8 C -0.15 -2.14 6.86 30.59 0.21 -1.93 16 9 C 0.50 11.69 8.02 87.90 0.71 12.40 16 10 O -0.59 -19.64 17.59 -3.04 -0.05 -19.69 16 11 N -0.72 -18.96 4.51 -457.81 -2.06 -21.02 16 12 C 0.70 25.67 8.51 179.05 1.52 27.19 16 13 O -0.65 -29.71 16.00 -4.00 -0.06 -29.78 16 14 N -0.72 -26.05 5.48 -478.55 -2.62 -28.67 16 15 C 0.18 7.59 5.15 86.38 0.44 8.03 16 16 C -0.04 -1.75 0.84 -52.92 -0.04 -1.79 16 17 C -0.47 -23.65 9.15 25.60 0.23 -23.42 16 18 H 0.05 2.83 8.06 -2.91 -0.02 2.80 16 19 C 0.04 2.09 5.47 84.65 0.46 2.56 16 20 N -0.94 -55.07 13.96 21.44 0.30 -54.77 16 21 Si 0.91 43.82 24.96 68.60 1.71 45.53 16 22 H -0.29 -14.83 7.04 99.48 0.70 -14.13 16 23 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 24 H -0.23 -9.88 5.72 99.48 0.57 -9.31 16 25 C -0.15 -5.02 9.96 30.62 0.30 -4.71 16 26 C -0.18 -6.90 8.03 30.62 0.25 -6.66 16 27 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.72 7.92 -2.39 -0.02 1.70 16 32 H 0.08 0.85 5.95 -2.38 -0.01 0.84 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.41 8.03 6.53 -92.71 -0.61 7.43 16 39 H 0.41 13.28 8.36 -92.71 -0.78 12.51 16 40 H 0.02 1.11 5.06 -2.39 -0.01 1.10 16 41 H 0.05 2.11 8.07 -2.38 -0.02 2.09 16 42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.09 3.00 8.14 -2.39 -0.02 2.99 16 46 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -77.58 370.90 0.64 -76.94 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.53 Total: 28.85 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.21 Total: 15.70 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -6.64 Total: -117.55 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -0.12 Total: -49.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.71 Total: 45.53 kcal Total: -77.58 0.64 -76.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430428708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.335 kcal (2) G-P(sol) polarization free energy of solvation -77.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds