Wall clock time and date at job start Tue Mar 31 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21278 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99835 * 180.02562 * 5 4 2 8 8 H 1.08991 * 109.30134 * 40.42016 * 7 5 4 9 9 C 1.52923 * 109.30089 * 281.03887 * 7 5 4 10 10 C 1.53349 * 108.67074 * 188.93733 * 9 7 5 11 11 C 1.53072 * 108.42672 * 67.53582 * 10 9 7 12 12 C 1.50177 * 109.88514 * 311.09488 * 11 10 9 13 13 O 1.21286 * 118.24022 * 197.56532 * 12 11 10 14 14 N 1.33344 * 123.51413 * 17.58263 * 12 11 10 15 15 C 1.46502 * 117.95062 * 177.79522 * 14 12 11 16 16 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 17 17 C 1.53493 * 114.21093 * 300.00230 * 16 2 1 18 18 N 1.47063 * 87.98878 * 87.52231 * 17 16 2 19 19 C 1.36937 * 136.06294 * 207.09193 * 18 17 16 20 20 H 1.08002 * 119.99154 * 8.42658 * 19 18 17 21 21 C 1.38809 * 120.00444 * 188.43562 * 19 18 17 22 22 N 1.31615 * 120.00184 * 174.84707 * 21 19 18 23 23 Si 1.86804 * 119.99817 * 354.84535 * 21 19 18 24 24 H 1.48500 * 109.46921 * 174.85685 * 23 21 19 25 25 H 1.48499 * 109.46931 * 294.85807 * 23 21 19 26 26 H 1.48497 * 109.47301 * 54.85270 * 23 21 19 27 27 C 1.47077 * 87.88326 * 27.34112 * 18 17 16 28 28 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 29 29 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 30 30 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 32 32 H 1.08999 * 109.60196 * 308.69399 * 9 7 5 33 33 H 1.08995 * 109.60613 * 69.17882 * 9 7 5 34 34 H 1.08995 * 109.67345 * 307.79358 * 10 9 7 35 35 H 1.09005 * 109.69500 * 187.28184 * 10 9 7 36 36 H 1.08994 * 109.39684 * 190.97070 * 11 10 9 37 37 H 1.08996 * 109.33508 * 71.18264 * 11 10 9 38 38 H 1.08994 * 109.47430 * 269.98497 * 15 14 12 39 39 H 1.08998 * 109.46702 * 29.98641 * 15 14 12 40 40 H 1.09005 * 109.46678 * 149.97881 * 15 14 12 41 41 H 1.09006 * 113.40935 * 166.79909 * 16 2 1 42 42 H 1.08997 * 113.46804 * 332.73869 * 17 16 2 43 43 H 1.09009 * 113.52158 * 202.31079 * 17 16 2 44 44 H 0.97003 * 120.00032 * 357.02883 * 22 21 19 45 45 H 1.09000 * 113.46243 * 87.44347 * 27 18 17 46 46 H 1.08997 * 113.46338 * 217.88020 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7288 -3.5876 8 1 2.2066 -1.7238 -3.6346 9 6 4.1706 -0.8599 -3.5104 10 6 4.6878 -1.3775 -4.8580 11 6 4.4622 -0.2911 -5.9125 12 6 3.0508 0.2153 -5.8303 13 8 2.6051 0.8287 -6.7770 14 7 2.2615 0.0271 -4.7722 15 6 0.9207 0.6167 -4.8021 16 6 2.0399 -0.7212 1.2493 17 6 1.5897 -0.0846 2.5714 18 7 0.3743 -0.9090 2.4946 19 6 -0.9131 -0.8126 2.9511 20 1 -1.2576 0.1048 3.4051 21 6 -1.7752 -1.8938 2.8304 22 7 -2.9793 -1.8377 3.3588 23 14 -1.2263 -3.4286 1.9178 24 1 -2.2726 -4.4757 2.0364 25 1 -1.0124 -3.1026 0.4850 26 1 0.0424 -3.9275 2.5067 27 6 1.1519 -1.8859 1.7172 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2491 -1.6317 -1.1525 32 1 4.6113 0.1145 -3.2993 33 1 4.4375 -1.5631 -2.7216 34 1 4.1435 -2.2795 -5.1380 35 1 5.7522 -1.5999 -4.7821 36 1 4.6406 -0.7066 -6.9042 37 1 5.1534 0.5328 -5.7354 38 1 0.9562 1.6217 -4.3819 39 1 0.5684 0.6659 -5.8324 40 1 0.2398 0.0009 -4.2144 41 1 3.1025 -0.9609 1.2076 42 1 1.3943 0.9849 2.4939 43 1 2.2318 -0.3354 3.4159 44 1 -3.2490 -1.0583 3.8695 45 1 1.6788 -2.6123 2.3359 46 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970817543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:31 Heat of formation + Delta-G solvation = 1.042838 kcal Electronic energy + Delta-G solvation = -26963.737950 eV Core-core repulsion = 23276.926291 eV Total energy + Delta-G solvation = -3686.811659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18712 -39.86616 -38.77847 -36.48286 -34.92012 -34.13342 -32.46884 -31.03688 -29.34435 -28.05624 -27.27355 -25.50787 -25.46801 -23.87545 -22.61575 -21.49852 -20.48434 -19.26514 -18.81305 -17.65409 -17.34466 -16.89064 -16.68757 -15.80035 -15.69372 -15.33134 -15.13880 -14.77495 -14.52950 -14.18193 -13.84873 -13.83147 -13.58195 -13.23759 -12.80065 -12.57712 -12.32728 -12.21003 -12.00285 -11.84860 -11.76477 -11.45363 -11.41473 -11.34584 -11.26460 -10.87587 -10.64579 -10.37770 -10.25936 -10.12308 -9.77564 -9.29764 -9.15174 -8.96761 -8.91861 -8.78802 -7.15417 -6.34191 -3.27259 2.36863 2.41808 2.73452 3.14734 3.29396 3.35615 3.57093 4.16615 4.22158 4.27883 4.36176 4.53303 4.65325 4.71041 4.79684 4.91832 4.98603 5.07912 5.23323 5.27034 5.31967 5.39963 5.41145 5.48047 5.60979 5.62012 5.71043 5.77186 5.93249 5.95767 6.09808 6.12736 6.15314 6.21048 6.30883 6.36138 6.47140 6.69038 6.83494 7.07283 7.18762 7.19663 7.48263 7.93769 8.15247 8.20325 8.93586 9.45974 10.32581 11.16649 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.003486 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.503981 B = 8030.022023 C = 8188.176224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.172 3.828 3 H 0.084 0.916 4 N -0.716 5.716 5 C 0.503 3.497 6 O -0.526 6.526 7 C 0.126 3.874 8 H 0.098 0.902 9 C -0.127 4.127 10 C -0.121 4.121 11 C -0.135 4.135 12 C 0.518 3.482 13 O -0.554 6.554 14 N -0.586 5.586 15 C 0.080 3.920 16 C -0.145 4.145 17 C 0.131 3.869 18 N -0.623 5.623 19 C -0.300 4.300 20 H 0.082 0.918 21 C -0.024 4.024 22 N -0.935 5.935 23 Si 1.069 2.931 24 H -0.297 1.297 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.097 3.903 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.398 0.602 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.041 0.959 44 H 0.261 0.739 45 H 0.044 0.956 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.940 -1.673 -14.398 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.069 3.931 3 H 0.102 0.898 4 N -0.367 5.367 5 C 0.287 3.713 6 O -0.402 6.402 7 C 0.018 3.982 8 H 0.116 0.884 9 C -0.165 4.165 10 C -0.159 4.159 11 C -0.175 4.175 12 C 0.306 3.694 13 O -0.432 6.432 14 N -0.318 5.318 15 C -0.062 4.062 16 C -0.165 4.165 17 C 0.004 3.996 18 N -0.351 5.351 19 C -0.427 4.427 20 H 0.100 0.900 21 C -0.223 4.223 22 N -0.577 5.577 23 Si 0.903 3.097 24 H -0.224 1.224 25 H -0.221 1.221 26 H -0.215 1.215 27 C -0.028 4.028 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.232 0.768 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.719 -1.955 -15.320 22.761 hybrid contribution 0.600 0.909 0.931 1.433 sum 17.319 -1.046 -14.390 22.541 Atomic orbital electron populations 1.22221 0.93130 1.03338 1.02156 1.20641 0.95511 0.95715 0.81218 0.89778 1.46166 1.66600 1.14045 1.09916 1.20598 0.78490 0.87703 0.84547 1.90728 1.49350 1.15672 1.84420 1.20986 0.97318 0.95535 0.84400 0.88441 1.21878 0.91643 1.03741 0.99280 1.21667 1.02640 0.98193 0.93410 1.21683 0.93518 1.00366 1.01923 1.20121 0.87925 0.79706 0.81630 1.90720 1.74296 1.42127 1.36085 1.46904 1.16147 1.53088 1.15685 1.21792 0.81878 0.99751 1.02818 1.23251 0.98348 0.99633 0.95311 1.22289 0.88412 0.96211 0.92717 1.46061 1.05045 1.20557 1.63461 1.20078 0.83869 1.00541 1.38163 0.90007 1.25666 0.94872 1.00689 1.01063 1.70908 1.19213 1.31656 1.35883 0.83742 0.74432 0.76193 0.75364 1.22404 1.22070 1.21525 1.22869 0.92238 0.93115 0.94590 0.88915 0.94556 0.92011 0.76778 0.90078 0.88785 0.90660 0.89815 0.87991 0.88132 0.90840 0.90574 0.91730 0.90365 0.93487 0.94181 0.92871 0.93836 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.06 37.16 0.30 -2.49 16 2 C 0.17 2.58 2.76 -67.93 -0.19 2.39 16 3 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 4 N -0.72 -8.42 5.08 -53.81 -0.27 -8.70 16 5 C 0.50 6.22 6.28 -10.99 -0.07 6.15 16 6 O -0.53 -8.59 14.00 5.56 0.08 -8.51 16 7 C 0.13 1.16 3.08 -69.52 -0.21 0.94 16 8 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 9 C -0.13 -0.81 5.29 -26.59 -0.14 -0.95 16 10 C -0.12 -0.62 6.03 -26.51 -0.16 -0.78 16 11 C -0.14 -1.01 6.03 -28.10 -0.17 -1.18 16 12 C 0.52 6.25 7.47 -11.87 -0.09 6.16 16 13 O -0.55 -8.86 16.18 5.55 0.09 -8.77 16 14 N -0.59 -6.87 2.96 -176.50 -0.52 -7.39 16 15 C 0.08 1.04 8.69 59.85 0.52 1.56 16 16 C -0.15 -2.15 4.25 -89.97 -0.38 -2.54 16 17 C 0.13 2.32 7.86 -8.51 -0.07 2.26 16 18 N -0.62 -13.86 2.09 -184.59 -0.39 -14.24 16 19 C -0.30 -8.11 9.92 -15.06 -0.15 -8.26 16 20 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 21 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 22 N -0.93 -28.74 13.71 55.49 0.76 -27.98 16 23 Si 1.07 25.44 24.89 -169.99 -4.23 21.21 16 24 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -6.40 5.95 56.52 0.34 -6.07 16 26 H -0.29 -6.36 6.22 56.52 0.35 -6.01 16 27 C 0.10 1.80 4.68 -8.36 -0.04 1.77 16 28 H 0.09 1.98 5.93 -51.93 -0.31 1.67 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.25 5.50 -51.93 -0.29 0.97 16 31 H 0.40 3.59 8.60 -40.82 -0.35 3.24 16 32 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.09 6.95 -51.93 -0.36 0.73 16 39 H 0.08 1.00 7.13 -51.93 -0.37 0.63 16 40 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 43 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 45 H 0.04 0.80 7.61 -51.93 -0.40 0.40 16 46 H 0.06 1.05 3.47 -51.93 -0.18 0.87 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -34.82 350.85 -7.52 -42.34 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.38 Total: 2.49 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -0.94 Total: 4.26 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.42 Total: -58.31 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.17 Total: -17.29 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -4.23 Total: 21.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.82 -7.52 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970817543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.382 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds