Wall clock time and date at job start Tue Mar 31 2020 04:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21278 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99835 * 180.02562 * 5 4 2 8 8 H 1.08991 * 109.30134 * 40.42016 * 7 5 4 9 9 C 1.52923 * 109.30089 * 281.03887 * 7 5 4 10 10 C 1.53349 * 108.67074 * 188.93733 * 9 7 5 11 11 C 1.53072 * 108.42672 * 67.53582 * 10 9 7 12 12 C 1.50177 * 109.88514 * 311.09488 * 11 10 9 13 13 O 1.21286 * 118.24022 * 197.56532 * 12 11 10 14 14 N 1.33344 * 123.51413 * 17.58263 * 12 11 10 15 15 C 1.46502 * 117.95062 * 177.79522 * 14 12 11 16 16 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 17 17 C 1.53493 * 114.21093 * 300.00230 * 16 2 1 18 18 N 1.47063 * 87.98878 * 87.52231 * 17 16 2 19 19 C 1.36937 * 136.06294 * 207.09193 * 18 17 16 20 20 H 1.08002 * 119.99154 * 8.42658 * 19 18 17 21 21 C 1.38809 * 120.00444 * 188.43562 * 19 18 17 22 22 N 1.31615 * 120.00184 * 174.84707 * 21 19 18 23 23 Si 1.86804 * 119.99817 * 354.84535 * 21 19 18 24 24 H 1.48500 * 109.46921 * 174.85685 * 23 21 19 25 25 H 1.48499 * 109.46931 * 294.85807 * 23 21 19 26 26 H 1.48497 * 109.47301 * 54.85270 * 23 21 19 27 27 C 1.47077 * 87.88326 * 27.34112 * 18 17 16 28 28 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 29 29 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 30 30 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 32 32 H 1.08999 * 109.60196 * 308.69399 * 9 7 5 33 33 H 1.08995 * 109.60613 * 69.17882 * 9 7 5 34 34 H 1.08995 * 109.67345 * 307.79358 * 10 9 7 35 35 H 1.09005 * 109.69500 * 187.28184 * 10 9 7 36 36 H 1.08994 * 109.39684 * 190.97070 * 11 10 9 37 37 H 1.08996 * 109.33508 * 71.18264 * 11 10 9 38 38 H 1.08994 * 109.47430 * 269.98497 * 15 14 12 39 39 H 1.08998 * 109.46702 * 29.98641 * 15 14 12 40 40 H 1.09005 * 109.46678 * 149.97881 * 15 14 12 41 41 H 1.09006 * 113.40935 * 166.79909 * 16 2 1 42 42 H 1.08997 * 113.46804 * 332.73869 * 17 16 2 43 43 H 1.09009 * 113.52158 * 202.31079 * 17 16 2 44 44 H 0.97003 * 120.00032 * 357.02883 * 22 21 19 45 45 H 1.09000 * 113.46243 * 87.44347 * 27 18 17 46 46 H 1.08997 * 113.46338 * 217.88020 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7288 -3.5876 8 1 2.2066 -1.7238 -3.6346 9 6 4.1706 -0.8599 -3.5104 10 6 4.6878 -1.3775 -4.8580 11 6 4.4622 -0.2911 -5.9125 12 6 3.0508 0.2153 -5.8303 13 8 2.6051 0.8287 -6.7770 14 7 2.2615 0.0271 -4.7722 15 6 0.9207 0.6167 -4.8021 16 6 2.0399 -0.7212 1.2493 17 6 1.5897 -0.0846 2.5714 18 7 0.3743 -0.9090 2.4946 19 6 -0.9131 -0.8126 2.9511 20 1 -1.2576 0.1048 3.4051 21 6 -1.7752 -1.8938 2.8304 22 7 -2.9793 -1.8377 3.3588 23 14 -1.2263 -3.4286 1.9178 24 1 -2.2726 -4.4757 2.0364 25 1 -1.0124 -3.1026 0.4850 26 1 0.0424 -3.9275 2.5067 27 6 1.1519 -1.8859 1.7172 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2491 -1.6317 -1.1525 32 1 4.6113 0.1145 -3.2993 33 1 4.4375 -1.5631 -2.7216 34 1 4.1435 -2.2795 -5.1380 35 1 5.7522 -1.5999 -4.7821 36 1 4.6406 -0.7066 -6.9042 37 1 5.1534 0.5328 -5.7354 38 1 0.9562 1.6217 -4.3819 39 1 0.5684 0.6659 -5.8324 40 1 0.2398 0.0009 -4.2144 41 1 3.1025 -0.9609 1.2076 42 1 1.3943 0.9849 2.4939 43 1 2.2318 -0.3354 3.4159 44 1 -3.2490 -1.0583 3.8695 45 1 1.6788 -2.6123 2.3359 46 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970817543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:30 Heat of formation + Delta-G solvation = -25.363054 kcal Electronic energy + Delta-G solvation = -26964.882996 eV Core-core repulsion = 23276.926291 eV Total energy + Delta-G solvation = -3687.956705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09236 -41.11350 -39.97985 -37.35250 -36.08031 -34.94355 -34.45957 -32.13336 -30.42793 -29.75863 -28.16248 -26.97756 -26.37600 -25.34985 -23.23866 -23.02210 -21.59564 -20.62597 -19.67594 -19.36173 -18.47129 -17.80317 -17.53806 -17.05246 -16.91265 -16.69272 -16.20555 -15.85374 -15.71758 -15.26245 -15.13479 -15.04268 -14.55608 -14.38781 -14.06516 -13.57016 -13.51868 -13.34843 -13.19601 -13.01681 -12.96765 -12.90778 -12.57335 -12.47120 -12.14245 -12.00806 -11.95501 -11.79622 -11.66261 -11.30030 -11.16155 -10.96124 -10.79670 -10.66211 -10.10876 -9.77516 -9.05855 -8.55464 -5.38479 1.38359 1.43288 1.51679 1.52211 1.70157 1.86195 2.19706 2.61020 3.08970 3.29672 3.45088 3.51344 3.64056 3.67803 3.82078 3.89021 4.06780 4.21892 4.27679 4.28894 4.46484 4.51926 4.54621 4.57662 4.71685 4.74987 4.81421 4.81995 4.86750 4.88207 4.89795 4.99531 5.02621 5.05380 5.06530 5.25254 5.30145 5.33376 5.36885 5.50536 5.63287 6.02533 6.32494 6.56795 6.77542 7.04599 7.23378 7.41229 8.36651 8.97765 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.003486 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.503981 B = 8030.022023 C = 8188.176224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.182 3.818 3 H 0.078 0.922 4 N -0.702 5.702 5 C 0.503 3.497 6 O -0.571 6.571 7 C 0.126 3.874 8 H 0.129 0.871 9 C -0.124 4.124 10 C -0.112 4.112 11 C -0.131 4.131 12 C 0.508 3.492 13 O -0.605 6.605 14 N -0.589 5.589 15 C 0.085 3.915 16 C -0.109 4.109 17 C 0.122 3.878 18 N -0.655 5.655 19 C -0.273 4.273 20 H 0.041 0.959 21 C -0.090 4.090 22 N -0.980 5.980 23 Si 1.107 2.893 24 H -0.316 1.316 25 H -0.264 1.264 26 H -0.253 1.253 27 C 0.091 3.909 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.046 0.954 31 H 0.418 0.582 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.133 0.867 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.242 0.758 45 H 0.063 0.937 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.630 -4.381 -15.602 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.078 3.922 3 H 0.096 0.904 4 N -0.354 5.354 5 C 0.289 3.711 6 O -0.450 6.450 7 C 0.019 3.981 8 H 0.147 0.853 9 C -0.162 4.162 10 C -0.149 4.149 11 C -0.170 4.170 12 C 0.299 3.701 13 O -0.487 6.487 14 N -0.321 5.321 15 C -0.058 4.058 16 C -0.128 4.128 17 C -0.003 4.003 18 N -0.384 5.384 19 C -0.401 4.401 20 H 0.059 0.941 21 C -0.281 4.281 22 N -0.626 5.626 23 Si 0.933 3.067 24 H -0.246 1.246 25 H -0.191 1.191 26 H -0.177 1.177 27 C -0.034 4.034 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.081 0.919 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.512 -4.679 -16.515 27.521 hybrid contribution -0.853 1.942 1.330 2.504 sum 20.659 -2.737 -15.185 25.785 Atomic orbital electron populations 1.22041 0.96316 1.01460 0.99943 1.20298 0.92703 0.96209 0.83024 0.90362 1.45889 1.65991 1.14871 1.08678 1.21218 0.77369 0.87199 0.85357 1.90733 1.51207 1.17956 1.85093 1.21303 0.99876 0.95527 0.81389 0.85330 1.21992 0.88669 1.04244 1.01273 1.21689 1.04614 0.97242 0.91358 1.21763 0.89888 1.01596 1.03773 1.21109 0.89478 0.78772 0.80754 1.90693 1.75592 1.44446 1.37966 1.47076 1.15410 1.52923 1.16646 1.21584 0.83397 0.98737 1.02075 1.23015 1.00497 0.96393 0.92919 1.22572 0.86744 0.95634 0.95375 1.46117 1.04752 1.23324 1.64204 1.19829 0.86625 0.98456 1.35187 0.94130 1.27061 0.94508 1.04189 1.02348 1.71029 1.21316 1.31489 1.38785 0.83359 0.74970 0.72250 0.76098 1.24552 1.19056 1.17737 1.23125 0.92113 0.93913 0.94202 0.92580 0.95416 0.93509 0.74433 0.91286 0.85294 0.89471 0.86844 0.86953 0.87325 0.93413 0.91417 0.91144 0.84963 0.94248 0.92041 0.94873 0.91905 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.06 71.98 0.58 -4.53 16 2 C 0.18 4.92 2.76 44.99 0.12 5.05 16 3 H 0.08 2.31 7.58 -2.39 -0.02 2.29 16 4 N -0.70 -13.50 5.08 -442.55 -2.25 -15.75 16 5 C 0.50 10.99 6.28 87.66 0.55 11.54 16 6 O -0.57 -18.21 14.00 -3.02 -0.04 -18.25 16 7 C 0.13 1.84 3.08 44.36 0.14 1.98 16 8 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 9 C -0.12 -0.91 5.29 30.69 0.16 -0.75 16 10 C -0.11 -0.52 6.03 30.74 0.19 -0.34 16 11 C -0.13 -1.53 6.03 29.71 0.18 -1.35 16 12 C 0.51 11.63 7.47 87.72 0.66 12.28 16 13 O -0.60 -19.60 16.18 -3.05 -0.05 -19.65 16 14 N -0.59 -12.93 2.96 -831.52 -2.46 -15.39 16 15 C 0.09 2.26 8.69 127.77 1.11 3.37 16 16 C -0.11 -2.69 4.25 -10.37 -0.04 -2.74 16 17 C 0.12 4.02 7.86 83.18 0.65 4.67 16 18 N -0.65 -28.27 2.09 -737.90 -1.54 -29.81 16 19 C -0.27 -15.15 9.92 84.03 0.83 -14.32 16 20 H 0.04 2.52 8.05 -2.91 -0.02 2.49 16 21 C -0.09 -5.25 5.50 84.86 0.47 -4.79 16 22 N -0.98 -63.20 13.71 21.65 0.30 -62.90 16 23 Si 1.11 50.37 24.89 68.60 1.71 52.08 16 24 H -0.32 -15.38 7.11 99.48 0.71 -14.67 16 25 H -0.26 -10.63 5.95 99.48 0.59 -10.04 16 26 H -0.25 -9.92 6.22 99.48 0.62 -9.30 16 27 C 0.09 2.96 4.68 83.27 0.39 3.35 16 28 H 0.06 2.45 5.93 -2.39 -0.01 2.44 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.83 5.50 -2.39 -0.01 1.82 16 31 H 0.42 4.94 8.60 -92.71 -0.80 4.14 16 32 H 0.07 0.73 8.10 -2.39 -0.02 0.71 16 33 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.09 0.28 8.13 -2.39 -0.02 0.26 16 35 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.50 6.95 -2.39 -0.02 1.48 16 39 H 0.07 1.86 7.13 -2.39 -0.02 1.85 16 40 H 0.07 1.71 7.75 -2.38 -0.02 1.70 16 41 H 0.13 2.07 8.14 -2.38 -0.02 2.06 16 42 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 43 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.24 15.84 8.73 -92.71 -0.81 15.04 16 45 H 0.06 1.91 7.61 -2.39 -0.02 1.89 16 46 H 0.05 1.78 3.47 -2.39 -0.01 1.77 16 Total: -1.00 -84.40 350.85 1.60 -82.80 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -0.05 Total: 13.45 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 5.98 Total: 13.43 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.95 Total: -123.86 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.09 Total: -37.90 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.71 Total: 52.08 kcal Total: -84.40 1.60 -82.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970817543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.441 kcal (2) G-P(sol) polarization free energy of solvation -84.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds