Wall clock time and date at job start Tue Mar 31 2020 04:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21278 * 119.99674 * 2 1 4 4 N 1.34777 * 119.99778 * 179.97438 * 2 1 3 5 5 C 1.47419 * 125.64799 * 359.96270 * 4 2 1 6 6 C 1.54916 * 104.82947 * 204.16012 * 5 4 2 7 7 C 1.55147 * 101.58109 * 322.99421 * 6 5 4 8 8 C 1.47021 * 125.64262 * 180.02562 * 4 2 1 9 9 H 1.08998 * 109.88531 * 59.34067 * 8 4 2 10 10 C 1.50693 * 109.88470 * 298.32183 * 8 4 2 11 11 O 1.21281 * 120.00104 * 341.46052 * 10 8 4 12 12 N 1.34780 * 119.99996 * 161.45387 * 10 8 4 13 13 C 1.47017 * 125.64676 * 359.97438 * 12 10 8 14 14 C 1.54326 * 107.27339 * 178.99569 * 13 12 10 15 15 C 1.55162 * 102.93970 * 337.80467 * 14 13 12 16 16 H 1.09005 * 111.00063 * 277.39324 * 15 14 13 17 17 N 1.46493 * 111.00664 * 153.57733 * 15 14 13 18 18 C 1.46507 * 119.99975 * 304.58742 * 17 15 14 19 19 C 1.36933 * 120.00467 * 124.57645 * 17 15 14 20 20 H 1.08001 * 119.99599 * 339.38211 * 19 17 15 21 21 C 1.38812 * 120.00024 * 159.64091 * 19 17 15 22 22 N 1.31617 * 120.00050 * 344.71824 * 21 19 17 23 23 Si 1.86802 * 119.99674 * 164.71997 * 21 19 17 24 24 H 1.48497 * 109.47461 * 94.72123 * 23 21 19 25 25 H 1.48502 * 109.47004 * 214.72365 * 23 21 19 26 26 H 1.48499 * 109.46994 * 334.71773 * 23 21 19 27 27 C 1.47472 * 125.63140 * 180.02562 * 12 10 8 28 28 H 1.08995 * 109.47804 * 270.00122 * 1 2 3 29 29 H 1.09005 * 109.47160 * 30.00337 * 1 2 3 30 30 H 1.09005 * 109.47124 * 149.99703 * 1 2 3 31 31 H 1.09002 * 110.37076 * 322.99853 * 5 4 2 32 32 H 1.08999 * 110.36687 * 85.32597 * 5 4 2 33 33 H 1.08996 * 111.00063 * 81.06952 * 6 5 4 34 34 H 1.09001 * 111.00082 * 204.91762 * 6 5 4 35 35 H 1.09009 * 110.71875 * 277.13499 * 7 6 5 36 36 H 1.09007 * 110.72114 * 153.86562 * 7 6 5 37 37 H 1.09002 * 109.88764 * 59.57691 * 13 12 10 38 38 H 1.09007 * 110.01350 * 298.48378 * 13 12 10 39 39 H 1.09005 * 110.71792 * 219.44649 * 14 13 12 40 40 H 1.09000 * 110.72398 * 96.16583 * 14 13 12 41 41 H 1.09001 * 109.46463 * 264.83979 * 18 17 15 42 42 H 1.08996 * 109.47227 * 24.83090 * 18 17 15 43 43 H 1.08992 * 109.47522 * 144.83645 * 18 17 15 44 44 H 0.96998 * 119.99724 * 179.97438 * 22 21 19 45 45 H 1.09007 * 110.34512 * 85.23234 * 27 12 10 46 46 H 1.09005 * 110.40131 * 322.89975 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5102 0.0019 6 6 2.6546 -3.4344 0.6149 7 6 3.9548 -2.8232 0.0294 8 6 3.6440 -1.3118 0.0011 9 1 4.0640 -0.8280 0.8829 10 6 4.2206 -0.6935 -1.2463 11 8 3.5079 -0.4853 -2.2052 12 7 5.5285 -0.3717 -1.2962 13 6 6.5012 -0.5680 -0.2114 14 6 7.8701 -0.0787 -0.7294 15 6 7.7076 -0.1591 -2.2703 16 1 7.8884 -1.1721 -2.6299 17 7 8.5892 0.7987 -2.9421 18 6 8.5242 2.2211 -2.5968 19 6 9.4743 0.3647 -3.8926 20 1 9.7695 -0.6737 -3.9214 21 6 9.9962 1.2606 -4.8156 22 7 9.4331 2.4388 -4.9801 23 14 11.4976 0.7938 -5.8243 24 1 11.0629 0.2386 -7.1312 25 1 12.3349 1.9989 -6.0522 26 1 12.2885 -0.2270 -5.0912 27 6 6.2202 0.2366 -2.4479 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 0.6734 -2.5189 0.6174 32 1 1.3401 -2.8223 -1.0162 33 1 2.6496 -3.3732 1.7032 34 1 2.5227 -4.4641 0.2825 35 1 4.1380 -3.1985 -0.9775 36 1 4.8050 -3.0297 0.6797 37 1 6.5593 -1.6252 0.0477 38 1 6.2068 0.0123 0.6631 39 1 8.6689 -0.7388 -0.3909 40 1 8.0572 0.9479 -0.4144 41 1 7.8665 2.7352 -3.2976 42 1 8.1347 2.3319 -1.5849 43 1 9.5229 2.6542 -2.6512 44 1 9.7980 3.0649 -5.6248 45 1 6.1106 1.3209 -2.4263 46 1 5.8293 -0.1665 -3.3822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972764121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:28 Heat of formation + Delta-G solvation = -30.848802 kcal Electronic energy + Delta-G solvation = -26768.476343 eV Core-core repulsion = 23080.281759 eV Total energy + Delta-G solvation = -3688.194585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73559 -39.10168 -37.61159 -36.86836 -34.78058 -32.36035 -31.62714 -30.37194 -29.68203 -29.04432 -27.61026 -26.03624 -24.47841 -23.21940 -22.35077 -21.68296 -20.25640 -19.26108 -18.45268 -17.52513 -17.13227 -16.98268 -15.93791 -15.75952 -15.43357 -14.96436 -14.64634 -14.36035 -13.99672 -13.61210 -13.40551 -13.26732 -13.24036 -12.77876 -12.71186 -12.55457 -12.50027 -12.35110 -12.14462 -11.94095 -11.71847 -11.63050 -11.40158 -11.23403 -10.90506 -10.77071 -10.49916 -10.41863 -10.25897 -9.94787 -9.88505 -9.80524 -9.69231 -8.74102 -8.57654 -8.24107 -6.81879 -5.74917 -3.19986 2.47532 2.73714 2.93052 3.35914 3.38319 3.44777 3.46699 4.11421 4.20085 4.46543 4.52689 4.64302 4.74378 4.90001 5.02665 5.04340 5.09120 5.17857 5.23557 5.27479 5.33529 5.40554 5.47653 5.51274 5.54140 5.62115 5.65768 5.79443 5.83737 5.89952 6.03821 6.03912 6.33029 6.43727 6.58658 6.67259 6.82268 6.90317 7.34733 7.36617 7.71992 7.79629 7.87132 8.09435 8.34725 8.46728 9.19488 9.82786 10.30821 11.29826 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.003183 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.963332 B = 8795.801131 C = 9188.235592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.530 3.470 3 O -0.534 6.534 4 N -0.604 5.604 5 C 0.100 3.900 6 C -0.130 4.130 7 C -0.120 4.120 8 C 0.122 3.878 9 H 0.095 0.905 10 C 0.522 3.478 11 O -0.535 6.535 12 N -0.611 5.611 13 C 0.103 3.897 14 C -0.153 4.153 15 C 0.174 3.826 16 H 0.077 0.923 17 N -0.585 5.585 18 C 0.159 3.841 19 C -0.261 4.261 20 H 0.071 0.929 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.906 3.094 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.088 3.912 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.031 0.969 42 H 0.003 0.997 43 H 0.045 0.955 44 H 0.253 0.747 45 H 0.066 0.934 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.765 -12.827 15.606 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.319 3.681 3 O -0.410 6.410 4 N -0.340 5.340 5 C -0.023 4.023 6 C -0.168 4.168 7 C -0.159 4.159 8 C 0.015 3.985 9 H 0.113 0.887 10 C 0.308 3.692 11 O -0.412 6.412 12 N -0.346 5.346 13 C -0.021 4.021 14 C -0.193 4.193 15 C 0.063 3.937 16 H 0.096 0.904 17 N -0.305 5.305 18 C 0.015 3.985 19 C -0.390 4.390 20 H 0.089 0.911 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.736 3.264 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.036 4.036 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.882 -11.886 14.950 24.213 hybrid contribution 0.766 -0.072 -0.653 1.009 sum -14.116 -11.957 14.297 23.381 Atomic orbital electron populations 1.21850 0.91198 1.05037 1.04361 1.20486 0.90354 0.81957 0.75278 1.90762 1.70587 1.30599 1.49015 1.48299 1.05256 1.06300 1.74158 1.22378 0.96813 0.81693 1.01419 1.22787 0.93759 0.99279 1.00989 1.22600 0.98922 0.91133 1.03196 1.21467 0.82458 0.97507 0.97098 0.88738 1.20307 0.80842 0.78696 0.89321 1.90677 1.58409 1.54341 1.37751 1.48487 1.07458 1.61314 1.17314 1.22047 0.89795 1.00103 0.90140 1.23200 0.94166 1.02272 0.99678 1.21443 0.87356 0.94643 0.90244 0.90434 1.43890 1.39985 1.03039 1.43597 1.20824 1.00452 0.83794 0.93458 1.19224 1.17357 0.95240 1.07217 0.91120 1.25002 0.99941 0.97066 0.97529 1.70102 1.39840 1.08219 1.36583 0.86227 0.82737 0.77376 0.80090 1.21474 1.21570 1.20442 1.23126 0.94306 0.98173 0.87996 0.88995 0.88769 0.90197 0.90071 0.90912 0.90131 0.89241 0.89796 0.88941 0.91910 0.92169 0.90505 0.90369 0.95059 0.97852 0.93655 0.93635 0.91521 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.67 36.01 0.35 -1.11 16 2 C 0.53 7.53 7.36 -10.98 -0.08 7.45 16 3 O -0.53 -10.37 16.91 5.56 0.09 -10.27 16 4 N -0.60 -7.39 2.75 -164.33 -0.45 -7.84 16 5 C 0.10 0.75 6.27 -2.53 -0.02 0.73 16 6 C -0.13 -0.75 7.08 -24.58 -0.17 -0.93 16 7 C -0.12 -1.03 6.32 -24.90 -0.16 -1.18 16 8 C 0.12 1.56 2.65 -68.11 -0.18 1.38 16 9 H 0.09 1.16 7.57 -51.93 -0.39 0.77 16 10 C 0.52 9.28 6.29 -10.99 -0.07 9.21 16 11 O -0.54 -11.76 16.39 5.56 0.09 -11.67 16 12 N -0.61 -10.67 3.33 -170.46 -0.57 -11.24 16 13 C 0.10 1.41 6.27 -3.07 -0.02 1.39 16 14 C -0.15 -2.46 6.49 -24.89 -0.16 -2.62 16 15 C 0.17 3.52 3.54 -65.77 -0.23 3.29 16 16 H 0.08 1.56 7.93 -51.93 -0.41 1.15 16 17 N -0.58 -14.51 2.96 -171.02 -0.51 -15.02 16 18 C 0.16 3.93 7.72 59.85 0.46 4.40 16 19 C -0.26 -7.10 9.63 -15.06 -0.15 -7.24 16 20 H 0.07 1.86 7.84 -52.49 -0.41 1.44 16 21 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 22 N -0.90 -26.50 10.68 55.49 0.59 -25.90 16 23 Si 0.91 21.76 29.58 -169.99 -5.03 16.73 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.09 1.83 6.49 -2.49 -0.02 1.81 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.54 7.18 -51.93 -0.37 0.16 16 31 H 0.08 0.39 7.55 -51.93 -0.39 0.00 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.82 7.84 -51.92 -0.41 0.41 16 36 H 0.09 0.60 7.90 -51.92 -0.41 0.19 16 37 H 0.06 0.68 7.76 -51.93 -0.40 0.27 16 38 H 0.06 0.76 7.95 -51.93 -0.41 0.34 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.33 6.17 -51.93 -0.32 1.01 16 41 H 0.03 0.85 7.40 -51.93 -0.38 0.47 16 42 H 0.00 0.07 6.17 -51.93 -0.32 -0.25 16 43 H 0.04 1.19 7.22 -51.93 -0.38 0.82 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.07 1.53 7.20 -51.93 -0.37 1.15 16 46 H 0.07 1.60 8.04 -51.93 -0.42 1.18 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -36.76 363.65 -8.30 -45.06 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.48 Total: -1.92 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: -0.53 Total: 16.60 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.93 Total: -60.00 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.19 Total: -21.95 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.76 -8.30 -45.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972764121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.211 kcal (2) G-P(sol) polarization free energy of solvation -36.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds