Wall clock time and date at job start Tue Mar 31 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 119.99765 * 2 1 4 4 N 1.34780 * 120.00333 * 180.28115 * 2 1 3 5 5 C 1.47418 * 125.64485 * 359.40985 * 4 2 1 6 6 C 1.55133 * 104.72091 * 155.82074 * 5 4 2 7 7 C 1.55157 * 101.48527 * 37.29438 * 6 5 4 8 8 H 1.09003 * 110.71737 * 82.69871 * 7 6 5 9 9 C 1.50693 * 110.71953 * 205.96730 * 7 6 5 10 10 O 1.21283 * 120.00257 * 354.97960 * 9 7 6 11 11 N 1.34775 * 119.99943 * 174.97762 * 9 7 6 12 12 C 1.46509 * 120.00165 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46866 * 185.11161 * 12 11 9 14 14 H 1.08997 * 109.87466 * 305.50566 * 13 12 11 15 15 C 1.54318 * 109.88297 * 66.68505 * 13 12 11 16 16 C 1.55165 * 102.94164 * 141.60953 * 15 13 12 17 17 C 1.54909 * 101.57872 * 324.49314 * 16 15 13 18 18 N 1.47026 * 109.87874 * 184.49335 * 13 12 11 19 19 C 1.36940 * 125.64942 * 61.67764 * 18 13 12 20 20 H 1.07995 * 120.00007 * 14.82161 * 19 18 13 21 21 C 1.38811 * 119.99983 * 194.82180 * 19 18 13 22 22 N 1.31618 * 119.99987 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00012 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47146 * 60.00147 * 23 21 19 25 25 H 1.48504 * 109.47361 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47126 * 300.00033 * 23 21 19 27 27 C 1.47022 * 125.64937 * 179.72399 * 4 2 1 28 28 H 1.08998 * 109.46738 * 269.72025 * 1 2 3 29 29 H 1.08994 * 109.47461 * 29.72065 * 1 2 3 30 30 H 1.09005 * 109.47074 * 149.72768 * 1 2 3 31 31 H 1.09000 * 110.37290 * 274.75044 * 5 4 2 32 32 H 1.09004 * 110.36831 * 37.07329 * 5 4 2 33 33 H 1.09000 * 111.19008 * 279.19244 * 6 5 4 34 34 H 1.09002 * 110.94006 * 155.29181 * 6 5 4 35 35 H 0.97003 * 120.00463 * 359.97438 * 11 9 7 36 36 H 1.08994 * 109.46712 * 305.10634 * 12 11 9 37 37 H 1.08998 * 109.46822 * 65.11167 * 12 11 9 38 38 H 1.09003 * 110.71921 * 259.96932 * 15 13 12 39 39 H 1.08997 * 110.72498 * 23.24756 * 15 13 12 40 40 H 1.09006 * 111.00268 * 206.42378 * 16 15 13 41 41 H 1.08995 * 111.00594 * 82.57298 * 16 15 13 42 42 H 1.08995 * 110.37378 * 278.17116 * 17 16 15 43 43 H 1.09002 * 110.45695 * 155.89790 * 17 16 15 44 44 H 0.97003 * 120.00469 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.88030 * 300.43365 * 27 4 2 46 46 H 1.08997 * 109.88552 * 61.44413 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0057 5 6 1.5731 -2.5102 0.0000 6 6 2.6521 -3.4339 -0.6240 7 6 3.9549 -2.8230 -0.0435 8 1 4.1424 -3.1991 0.9622 9 6 5.1262 -3.1078 -0.9478 10 8 4.9822 -3.8158 -1.9220 11 7 6.3339 -2.5759 -0.6740 12 6 7.4726 -2.8523 -1.5534 13 6 8.7403 -2.2404 -0.9538 14 1 8.5838 -1.1791 -0.7606 15 6 9.1047 -2.9678 0.3574 16 6 10.6537 -3.0361 0.2980 17 6 10.8980 -3.2401 -1.2180 18 7 9.8680 -2.4190 -1.8801 19 6 9.9486 -1.9069 -3.1476 20 1 9.2676 -1.1291 -3.4601 21 6 10.9056 -2.3875 -4.0308 22 7 11.7352 -3.3357 -3.6501 23 14 11.0151 -1.6894 -5.7599 24 1 11.2921 -0.2323 -5.6889 25 1 12.1109 -2.3666 -6.4987 26 1 9.7289 -1.9149 -6.4671 27 6 3.6440 -1.3118 -0.0122 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3634 0.8924 -0.5094 30 1 -0.3633 -0.8876 -0.5181 31 1 1.3487 -2.8208 1.0204 32 1 0.6684 -2.5198 -0.6080 33 1 2.6424 -3.3717 -1.7121 34 1 2.5220 -4.4641 -0.2924 35 1 6.4491 -2.0093 0.1050 36 1 7.6014 -3.9300 -1.6530 37 1 7.2878 -2.4161 -2.5350 38 1 8.7770 -2.3910 1.2223 39 1 8.6750 -3.9693 0.3752 40 1 11.0297 -3.8832 0.8718 41 1 11.0994 -2.1035 0.6437 42 1 10.7753 -4.2899 -1.4843 43 1 11.8941 -2.8936 -1.4934 44 1 12.4038 -3.6718 -4.2674 45 1 4.0603 -0.8293 -0.8966 46 1 4.0649 -0.8629 0.8875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028292007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:47 Heat of formation + Delta-G solvation = -49.729877 kcal Electronic energy + Delta-G solvation = -25918.600517 eV Core-core repulsion = 22229.587188 eV Total energy + Delta-G solvation = -3689.013329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61552 -39.36704 -37.80378 -37.08063 -34.32229 -32.57436 -32.38975 -30.18707 -29.89151 -29.27629 -28.24484 -25.03313 -24.35258 -23.70812 -22.10843 -20.36408 -19.99795 -19.66043 -19.39283 -17.67371 -17.24660 -16.72914 -16.15427 -15.83914 -15.65907 -15.07427 -14.79427 -14.41474 -14.25527 -13.89165 -13.72319 -13.42337 -13.28523 -13.02285 -12.86903 -12.65797 -12.34691 -12.12847 -11.96840 -11.89273 -11.68925 -11.63824 -11.32991 -11.18955 -10.95067 -10.77920 -10.26974 -10.19948 -10.13381 -9.97995 -9.86018 -9.75452 -9.61823 -8.99305 -8.71727 -8.58350 -6.85064 -5.77845 -3.14660 2.34918 2.55951 2.79475 3.34656 3.41789 3.45309 3.46794 4.00279 4.16682 4.47247 4.50794 4.62362 4.80052 4.87248 4.92287 5.01570 5.03498 5.16055 5.31885 5.38583 5.42775 5.45335 5.49018 5.53910 5.60982 5.63831 5.79314 5.87235 5.92365 6.04156 6.11385 6.22301 6.43853 6.52076 6.59495 6.67464 6.78645 7.03557 7.16880 7.49860 7.59563 7.71520 7.77923 7.86002 8.24395 8.39312 9.16383 9.76912 10.44127 11.34146 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.003017 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.587249 B = 9277.920233 C = 9844.787531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.544 6.544 4 N -0.620 5.620 5 C 0.097 3.903 6 C -0.113 4.113 7 C -0.124 4.124 8 H 0.111 0.889 9 C 0.517 3.483 10 O -0.537 6.537 11 N -0.720 5.720 12 C 0.108 3.892 13 C 0.151 3.849 14 H 0.038 0.962 15 C -0.125 4.125 16 C -0.149 4.149 17 C 0.172 3.828 18 N -0.588 5.588 19 C -0.235 4.235 20 H 0.075 0.925 21 C 0.000 4.000 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.116 3.884 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.396 0.604 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.254 0.746 45 H 0.075 0.925 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.943 0.025 12.867 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.314 3.686 3 O -0.422 6.422 4 N -0.355 5.355 5 C -0.026 4.026 6 C -0.151 4.151 7 C -0.146 4.146 8 H 0.129 0.871 9 C 0.301 3.699 10 O -0.414 6.414 11 N -0.370 5.370 12 C -0.017 4.017 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.163 4.163 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.313 5.313 19 C -0.364 4.364 20 H 0.093 0.907 21 C -0.198 4.198 22 N -0.561 5.561 23 Si 0.741 3.259 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.209 1.209 27 C -0.007 4.007 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.564 0.125 11.930 22.915 hybrid contribution 0.141 0.422 -0.561 0.716 sum -19.423 0.547 11.368 22.512 Atomic orbital electron populations 1.21895 0.91222 1.04995 1.04745 1.20541 0.90429 0.81934 0.75718 1.90756 1.70765 1.30661 1.49977 1.48569 1.07054 1.06197 1.73727 1.22519 0.97276 0.81562 1.01215 1.22738 0.90997 0.98948 1.02428 1.22440 0.95052 0.96140 1.01000 0.87058 1.20116 0.83714 0.80326 0.85717 1.90726 1.84158 1.37858 1.28639 1.46185 1.09649 1.51106 1.30091 1.22277 0.84383 1.01287 0.93754 1.21136 0.87812 0.96488 0.90273 0.94483 1.22602 0.97322 0.99938 0.96483 1.23009 0.94809 1.00379 1.00553 1.21454 0.94169 0.94373 0.85266 1.44475 1.13217 1.60744 1.12840 1.18936 1.15996 1.14687 0.86755 0.90721 1.24915 0.98998 0.97731 0.98128 1.69925 1.21423 1.29851 1.34950 0.86225 0.77326 0.78225 0.84158 1.21026 1.21540 1.20941 1.21831 0.81232 0.94393 1.03220 0.88797 0.88791 0.90049 0.90790 0.89947 0.88942 0.89045 0.77058 0.91559 0.91423 0.92402 0.91852 0.92341 0.92290 0.95597 0.90986 0.93527 0.90628 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 9.90 36.00 0.36 -0.67 16 2 C 0.52 5.68 7.96 -10.99 -0.09 5.59 16 3 O -0.54 -8.48 17.43 5.55 0.10 -8.39 16 4 N -0.62 -5.89 3.32 -170.39 -0.57 -6.45 16 5 C 0.10 0.60 6.69 -2.41 -0.02 0.59 16 6 C -0.11 -0.94 6.15 -24.46 -0.15 -1.09 16 7 C -0.12 -1.18 3.34 -89.94 -0.30 -1.48 16 8 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 9 C 0.52 7.36 7.02 -10.99 -0.08 7.28 16 10 O -0.54 -10.02 15.76 5.56 0.09 -9.93 16 11 N -0.72 -10.21 5.30 -60.29 -0.32 -10.53 16 12 C 0.11 2.04 5.10 -4.04 -0.02 2.02 16 13 C 0.15 2.94 3.19 -66.95 -0.21 2.73 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 15 C -0.13 -2.04 6.20 -24.90 -0.15 -2.19 16 16 C -0.15 -2.69 7.09 -24.58 -0.17 -2.87 16 17 C 0.17 4.08 5.41 -2.53 -0.01 4.06 16 18 N -0.59 -14.54 3.13 -162.57 -0.51 -15.05 16 19 C -0.24 -6.46 9.72 -15.06 -0.15 -6.61 16 20 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 21 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 22 N -0.92 -26.65 10.58 55.49 0.59 -26.06 16 23 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.12 1.20 6.40 -3.07 -0.02 1.18 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.33 6.52 -51.93 -0.34 -0.01 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.37 6.74 -51.93 -0.35 0.02 16 33 H 0.09 0.99 7.49 -51.93 -0.39 0.60 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.40 4.45 8.39 -40.82 -0.34 4.10 16 36 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 37 H 0.07 1.48 7.86 -51.93 -0.41 1.07 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.02 7.78 -51.93 -0.40 0.61 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 43 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.08 0.96 7.81 -51.93 -0.41 0.55 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -35.14 369.19 -8.80 -43.94 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.61 Total: 1.28 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.11 Total: 8.44 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.81 Total: -58.09 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.18 Total: -18.32 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.14 -8.80 -43.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028292007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.787 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds