Wall clock time and date at job start Tue Mar 31 2020 04:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21282 * 119.99793 * 2 1 4 4 N 1.34775 * 119.99962 * 180.02562 * 2 1 3 5 5 C 1.47420 * 125.65056 * 359.97105 * 4 2 1 6 6 C 1.54910 * 104.83357 * 155.90617 * 5 4 2 7 7 C 1.55157 * 101.58262 * 37.00919 * 6 5 4 8 8 H 1.09002 * 110.71843 * 83.03672 * 7 6 5 9 9 C 1.50698 * 110.72148 * 206.13247 * 7 6 5 10 10 O 1.21284 * 120.00071 * 357.56495 * 9 7 6 11 11 N 1.34776 * 120.00131 * 177.55569 * 9 7 6 12 12 C 1.46493 * 120.00271 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47245 * 186.14689 * 12 11 9 14 14 H 1.08998 * 109.99793 * 297.62266 * 13 12 11 15 15 C 1.54322 * 109.88465 * 176.52554 * 13 12 11 16 16 C 1.55157 * 102.94321 * 218.38897 * 15 13 12 17 17 C 1.54683 * 101.67893 * 35.33708 * 16 15 13 18 18 N 1.47021 * 109.88595 * 58.71895 * 13 12 11 19 19 C 1.36943 * 125.64438 * 298.32483 * 18 13 12 20 20 H 1.08000 * 119.99858 * 337.43190 * 19 18 13 21 21 C 1.38811 * 119.99984 * 157.16399 * 19 18 13 22 22 N 1.31614 * 120.00119 * 161.31967 * 21 19 18 23 23 Si 1.86800 * 119.99903 * 341.31909 * 21 19 18 24 24 H 1.48503 * 109.47047 * 85.77233 * 23 21 19 25 25 H 1.48503 * 109.47347 * 205.77303 * 23 21 19 26 26 H 1.48502 * 109.47407 * 325.77146 * 23 21 19 27 27 C 1.47318 * 125.61384 * 180.19242 * 4 2 1 28 28 H 1.08999 * 109.46885 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46847 * 299.99668 * 1 2 3 30 30 H 1.08994 * 109.47379 * 59.99631 * 1 2 3 31 31 H 1.09004 * 110.36336 * 37.07173 * 5 4 2 32 32 H 1.08997 * 110.46008 * 274.79092 * 5 4 2 33 33 H 1.09007 * 111.00326 * 278.93689 * 6 5 4 34 34 H 1.09002 * 111.03752 * 155.09881 * 6 5 4 35 35 H 0.97002 * 119.99690 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.47245 * 66.14384 * 12 11 9 37 37 H 1.09006 * 109.47264 * 306.14321 * 12 11 9 38 38 H 1.09001 * 110.71987 * 336.75329 * 15 13 12 39 39 H 1.08999 * 110.72209 * 100.02620 * 15 13 12 40 40 H 1.09004 * 111.00333 * 153.57753 * 16 15 13 41 41 H 1.09004 * 111.00249 * 277.38710 * 16 15 13 42 42 H 1.08995 * 110.39232 * 204.36788 * 17 16 15 43 43 H 1.08997 * 110.24142 * 82.10927 * 17 16 15 44 44 H 0.97000 * 120.00195 * 180.02562 * 22 21 19 45 45 H 1.09004 * 110.06682 * 61.68244 * 27 4 2 46 46 H 1.09000 * 109.85696 * 300.42093 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5730 -2.5103 -0.0005 6 6 2.6546 -3.4351 -0.6125 7 6 3.9549 -2.8232 -0.0275 8 1 4.1397 -3.1998 0.9786 9 6 5.1303 -3.1097 -0.9261 10 8 4.9804 -3.7809 -1.9252 11 7 6.3480 -2.6201 -0.6197 12 6 7.4904 -2.8981 -1.4935 13 6 8.7696 -2.3638 -0.8461 14 1 8.7056 -1.2818 -0.7318 15 6 9.9904 -2.7283 -1.7169 16 6 11.0770 -3.0744 -0.6648 17 6 10.2350 -3.7456 0.4457 18 7 8.9665 -2.9946 0.4673 19 6 8.1155 -2.8960 1.5356 20 1 7.4289 -2.0651 1.6041 21 6 8.1314 -3.8668 2.5276 22 7 7.6087 -3.6103 3.7079 23 14 8.8949 -5.5374 2.1873 24 1 10.3560 -5.4757 2.4454 25 1 8.2776 -6.5541 3.0764 26 1 8.6579 -5.9104 0.7696 27 6 3.6469 -1.3113 0.0034 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.6735 -2.5195 -0.6162 32 1 1.3387 -2.8224 1.0172 33 1 2.6498 -3.3749 -1.7009 34 1 2.5231 -4.4646 -0.2796 35 1 6.4679 -2.0835 0.1795 36 1 7.3390 -2.4097 -2.4561 37 1 7.5807 -3.9742 -1.6422 38 1 9.7722 -3.5924 -2.3445 39 1 10.2988 -1.8773 -2.3242 40 1 11.8107 -3.7685 -1.0747 41 1 11.5616 -2.1718 -0.2923 42 1 10.7407 -3.6636 1.4077 43 1 10.0523 -4.7917 0.2002 44 1 7.6201 -4.2886 4.4013 45 1 4.0640 -0.8665 0.9069 46 1 4.0688 -0.8290 -0.8784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028292009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:50 Heat of formation + Delta-G solvation = -43.955256 kcal Electronic energy + Delta-G solvation = -26743.981802 eV Core-core repulsion = 23055.218879 eV Total energy + Delta-G solvation = -3688.762923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.31725 -39.15262 -38.05347 -36.85748 -33.98364 -32.74159 -32.20120 -30.05960 -29.95458 -29.75517 -28.44339 -25.14368 -24.15857 -23.55545 -21.93593 -20.99599 -19.83821 -19.38225 -19.19644 -17.48701 -17.01572 -16.74343 -16.01386 -15.72853 -15.40340 -15.21526 -15.09822 -14.62256 -14.13910 -13.51852 -13.39776 -13.35084 -13.12442 -12.97598 -12.81908 -12.63987 -12.56303 -12.40353 -12.05448 -11.73519 -11.63062 -11.35658 -11.31505 -11.20805 -11.02065 -10.84216 -10.68715 -10.56704 -10.08749 -9.99356 -9.95768 -9.52800 -9.34969 -8.83126 -8.72086 -8.37089 -7.13374 -6.07298 -3.41916 2.57040 2.84756 3.10771 3.28111 3.42133 3.45002 3.74676 4.32619 4.44148 4.46488 4.76206 4.84700 4.96137 5.05590 5.13663 5.17739 5.21342 5.23050 5.26307 5.33463 5.35131 5.49552 5.56184 5.64904 5.74647 5.79394 5.86494 5.89456 5.95324 6.06825 6.07860 6.12764 6.21028 6.23299 6.27693 6.35169 6.58636 6.72999 6.79959 7.06763 7.43194 7.58934 8.08804 8.10319 8.19084 8.64567 8.77070 9.55284 10.07573 11.07588 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.004032 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.164686 B = 6942.101783 C = 7466.208944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.548 6.548 4 N -0.618 5.618 5 C 0.097 3.903 6 C -0.111 4.111 7 C -0.124 4.124 8 H 0.118 0.882 9 C 0.522 3.478 10 O -0.560 6.560 11 N -0.698 5.698 12 C 0.114 3.886 13 C 0.145 3.855 14 H 0.050 0.950 15 C -0.123 4.123 16 C -0.131 4.131 17 C 0.108 3.892 18 N -0.603 5.603 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.029 3.971 22 N -0.906 5.906 23 Si 0.887 3.113 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.274 1.274 27 C 0.119 3.881 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.412 0.588 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.264 0.736 45 H 0.081 0.919 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.714 1.812 -8.266 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.313 3.687 3 O -0.426 6.426 4 N -0.353 5.353 5 C -0.026 4.026 6 C -0.150 4.150 7 C -0.146 4.146 8 H 0.136 0.864 9 C 0.307 3.693 10 O -0.440 6.440 11 N -0.350 5.350 12 C -0.012 4.012 13 C 0.038 3.962 14 H 0.068 0.932 15 C -0.162 4.162 16 C -0.169 4.169 17 C -0.017 4.017 18 N -0.328 5.328 19 C -0.370 4.370 20 H 0.106 0.894 21 C -0.170 4.170 22 N -0.549 5.549 23 Si 0.718 3.282 24 H -0.213 1.213 25 H -0.232 1.232 26 H -0.200 1.200 27 C -0.003 4.003 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.253 0.747 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.622 1.955 -8.699 12.403 hybrid contribution 0.490 -1.014 0.460 1.217 sum -8.132 0.941 -8.239 11.614 Atomic orbital electron populations 1.21879 0.91455 1.04358 1.05170 1.20499 0.90332 0.82024 0.75802 1.90737 1.70720 1.30707 1.50393 1.48662 1.07262 1.06085 1.73274 1.22464 0.97060 0.81695 1.01364 1.22670 0.91338 0.98935 1.02027 1.22414 0.94537 0.95895 1.01764 0.86430 1.20045 0.84116 0.79627 0.85511 1.90631 1.85190 1.40179 1.28008 1.46185 1.07245 1.53132 1.28459 1.21913 0.86306 1.00818 0.92159 1.21318 0.91812 0.96762 0.86339 0.93239 1.22524 0.95255 1.01134 0.97254 1.22680 0.96964 1.00641 0.96635 1.21945 0.87411 0.94707 0.97588 1.44844 1.20126 1.59378 1.08501 1.18375 1.16154 1.05873 0.96579 0.89384 1.25044 0.98375 0.97850 0.95758 1.69792 1.48325 1.34287 1.02453 0.86908 0.78352 0.85554 0.77365 1.21300 1.23194 1.20006 1.21873 0.80709 0.94645 1.03122 0.90399 0.88696 0.88837 0.90126 0.90743 0.89232 0.89194 0.74716 0.92972 0.91957 0.91372 0.91270 0.91690 0.91260 0.92412 0.95622 0.92591 0.90063 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.19 36.00 0.37 -1.02 16 2 C 0.52 7.02 7.96 -10.99 -0.09 6.94 16 3 O -0.55 -9.81 17.43 5.56 0.10 -9.71 16 4 N -0.62 -7.88 3.33 -170.28 -0.57 -8.45 16 5 C 0.10 0.93 6.39 -2.53 -0.02 0.91 16 6 C -0.11 -1.32 6.16 -24.58 -0.15 -1.47 16 7 C -0.12 -1.82 3.33 -89.94 -0.30 -2.12 16 8 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 9 C 0.52 9.43 7.01 -10.99 -0.08 9.35 16 10 O -0.56 -11.49 15.71 5.55 0.09 -11.40 16 11 N -0.70 -12.90 4.78 -60.30 -0.29 -13.19 16 12 C 0.11 2.07 5.23 -4.05 -0.02 2.05 16 13 C 0.15 2.60 3.39 -66.95 -0.23 2.38 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.12 -1.83 6.48 -24.90 -0.16 -1.99 16 16 C -0.13 -2.05 7.07 -24.70 -0.17 -2.23 16 17 C 0.11 2.22 4.72 -2.65 -0.01 2.21 16 18 N -0.60 -13.22 2.89 -162.72 -0.47 -13.69 16 19 C -0.24 -6.10 8.78 -15.06 -0.13 -6.23 16 20 H 0.09 2.27 6.42 -52.49 -0.34 1.94 16 21 C 0.03 0.80 5.46 -17.43 -0.10 0.70 16 22 N -0.91 -25.95 13.97 55.49 0.78 -25.18 16 23 Si 0.89 21.96 24.29 -169.99 -4.13 17.83 16 24 H -0.29 -6.89 6.70 56.52 0.38 -6.51 16 25 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 26 H -0.27 -6.84 6.49 56.52 0.37 -6.48 16 27 C 0.12 1.72 6.46 -2.90 -0.02 1.71 16 28 H 0.08 0.47 6.09 -51.93 -0.32 0.15 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.57 6.94 -51.93 -0.36 0.21 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.17 7.44 -51.92 -0.39 0.78 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.41 7.82 5.60 -40.82 -0.23 7.59 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 38 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.27 6.96 -51.93 -0.36 0.91 16 43 H 0.03 0.56 5.31 -51.93 -0.28 0.29 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.10 7.81 -51.93 -0.41 0.70 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -33.17 357.68 -7.55 -40.73 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.34 Total: 6.49 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -1.11 Total: 11.18 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.55 Total: -60.51 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.18 Total: -21.11 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.13 Total: 17.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.17 -7.55 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028292009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.227 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds