Wall clock time and date at job start Tue Mar 31 2020 04:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 120.00175 * 2 1 4 4 N 1.34781 * 119.99808 * 179.97438 * 2 1 3 5 5 C 1.47016 * 125.64888 * 0.02562 * 4 2 1 6 6 C 1.54324 * 107.27062 * 178.90618 * 5 4 2 7 7 C 1.55155 * 103.10444 * 337.72148 * 6 5 4 8 8 H 1.09000 * 111.00260 * 277.51786 * 7 6 5 9 9 C 1.50692 * 111.01005 * 153.66307 * 7 6 5 10 10 O 1.21291 * 119.99591 * 0.02562 * 9 7 6 11 11 N 1.34770 * 120.00453 * 179.97438 * 9 7 6 12 12 C 1.46507 * 120.00246 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47015 * 185.13927 * 12 11 9 14 14 H 1.09002 * 109.87282 * 303.57199 * 13 12 11 15 15 C 1.54321 * 109.88560 * 64.58925 * 13 12 11 16 16 C 1.55157 * 102.94223 * 141.60911 * 15 13 12 17 17 C 1.54902 * 101.58205 * 324.49900 * 16 15 13 18 18 N 1.47022 * 109.88024 * 182.39876 * 13 12 11 19 19 C 1.36930 * 125.64886 * 61.59729 * 18 13 12 20 20 H 1.07998 * 120.00310 * 14.75209 * 19 18 13 21 21 C 1.38818 * 119.99905 * 194.75168 * 19 18 13 22 22 N 1.31619 * 120.00039 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47331 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46878 * 120.00423 * 23 21 19 26 26 H 1.48498 * 109.47396 * 240.00165 * 23 21 19 27 27 C 1.47425 * 125.64686 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.47311 * 269.99911 * 1 2 3 29 29 H 1.08993 * 109.47168 * 30.00589 * 1 2 3 30 30 H 1.09003 * 109.46920 * 150.00223 * 1 2 3 31 31 H 1.09002 * 109.88297 * 59.48914 * 5 4 2 32 32 H 1.09000 * 109.88471 * 298.32130 * 5 4 2 33 33 H 1.09007 * 110.72112 * 96.17331 * 6 5 4 34 34 H 1.08995 * 110.72521 * 219.26529 * 6 5 4 35 35 H 0.97001 * 119.99881 * 0.02562 * 11 9 7 36 36 H 1.09003 * 109.46592 * 305.13382 * 12 11 9 37 37 H 1.08999 * 109.46801 * 65.13825 * 12 11 9 38 38 H 1.08997 * 110.72001 * 259.97268 * 15 13 12 39 39 H 1.08998 * 110.72143 * 23.24237 * 15 13 12 40 40 H 1.09005 * 111.00328 * 82.57698 * 16 15 13 41 41 H 1.09007 * 111.00087 * 206.38430 * 16 15 13 42 42 H 1.09003 * 110.36560 * 155.84920 * 17 16 15 43 43 H 1.09000 * 110.36571 * 278.05941 * 17 16 15 44 44 H 0.96999 * 120.00114 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.36847 * 323.00026 * 27 4 2 46 46 H 1.09004 * 110.36761 * 85.21252 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5747 -2.5066 0.0006 6 6 2.7281 -3.5316 -0.0269 7 6 3.9100 -2.7155 -0.6137 8 1 3.8591 -2.6817 -1.7020 9 6 5.2324 -3.2730 -0.1540 10 8 5.2614 -4.2387 0.5793 11 7 6.3828 -2.6992 -0.5584 12 6 7.6685 -3.2416 -0.1119 13 6 8.8014 -2.3389 -0.6043 14 1 8.7516 -2.2397 -1.6886 15 6 8.6891 -0.9484 0.0556 16 6 10.1699 -0.5708 0.3245 17 6 10.7827 -1.9485 0.6790 18 7 10.0995 -2.9056 -0.2100 19 6 10.5918 -4.1214 -0.6029 20 1 10.1388 -4.6454 -1.4315 21 6 11.6734 -4.6806 0.0640 22 7 12.2252 -4.0423 1.0741 23 14 12.3446 -6.3396 -0.4715 24 1 11.5538 -6.8456 -1.6220 25 1 13.7660 -6.1915 -0.8752 26 1 12.2481 -7.3002 0.6568 27 6 3.6480 -1.3124 0.0001 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.9480 -2.6299 -0.8827 32 1 0.9784 -2.6436 0.9027 33 1 2.9607 -3.8775 0.9803 34 1 2.4811 -4.3728 -0.6744 35 1 6.3596 -1.9271 -1.1452 36 1 7.6858 -3.2851 0.9771 37 1 7.8004 -4.2445 -0.5179 38 1 8.2267 -0.2344 -0.6258 39 1 8.1308 -1.0088 0.9898 40 1 10.6352 -0.1543 -0.5689 41 1 10.2505 0.1210 1.1631 42 1 11.8551 -1.9482 0.4837 43 1 10.5882 -2.1928 1.7233 44 1 12.9807 -4.4332 1.5403 45 1 4.1056 -0.5380 -0.6156 46 1 4.0343 -1.2642 1.0182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028292011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:53 Heat of formation + Delta-G solvation = -50.892702 kcal Electronic energy + Delta-G solvation = -25913.385121 eV Core-core repulsion = 22224.321368 eV Total energy + Delta-G solvation = -3689.063753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59921 -39.38663 -37.80934 -37.09510 -34.32040 -32.56877 -32.39994 -30.17692 -29.89984 -29.28383 -28.27373 -25.05327 -24.37705 -23.69135 -22.11244 -20.36536 -19.99489 -19.68955 -19.35006 -17.65679 -17.35928 -16.72090 -15.95476 -15.85127 -15.72655 -15.03010 -14.83507 -14.57425 -14.08430 -13.92204 -13.80141 -13.47465 -13.28146 -13.02914 -12.90883 -12.74375 -12.35955 -12.12014 -11.93693 -11.90500 -11.81409 -11.49336 -11.32154 -11.16991 -10.95365 -10.82155 -10.25963 -10.24294 -10.10055 -9.96538 -9.85462 -9.75332 -9.62156 -9.02653 -8.72669 -8.60107 -6.85935 -5.78838 -3.15607 2.31060 2.52703 2.78237 3.34754 3.39684 3.44817 3.46466 4.00102 4.19966 4.46371 4.48445 4.60924 4.78605 4.89267 4.90740 5.00665 5.03221 5.18892 5.31743 5.37971 5.40929 5.43472 5.50502 5.53791 5.60790 5.64707 5.78957 5.80297 5.94228 6.03727 6.11725 6.23933 6.44876 6.52597 6.59496 6.67777 6.78566 7.03448 7.15057 7.50041 7.59687 7.70906 7.77631 7.82512 8.23312 8.38566 9.15349 9.75968 10.43409 11.33238 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002913 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.093889 B = 9608.929406 C =10589.004814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.525 3.475 3 O -0.545 6.545 4 N -0.620 5.620 5 C 0.100 3.900 6 C -0.113 4.113 7 C -0.126 4.126 8 H 0.109 0.891 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.719 5.719 12 C 0.108 3.892 13 C 0.152 3.848 14 H 0.037 0.963 15 C -0.126 4.126 16 C -0.149 4.149 17 C 0.172 3.828 18 N -0.589 5.589 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.118 3.882 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.396 0.604 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.271 6.158 -3.898 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.422 6.422 4 N -0.356 5.356 5 C -0.023 4.023 6 C -0.152 4.152 7 C -0.148 4.148 8 H 0.127 0.873 9 C 0.303 3.697 10 O -0.414 6.414 11 N -0.370 5.370 12 C -0.017 4.017 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.164 4.164 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.313 5.313 19 C -0.362 4.362 20 H 0.094 0.906 21 C -0.199 4.199 22 N -0.561 5.561 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.005 4.005 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.743 5.945 -3.291 22.780 hybrid contribution 0.341 -0.701 -0.470 0.910 sum -21.402 5.245 -3.761 22.353 Atomic orbital electron populations 1.21884 0.91236 1.04887 1.04830 1.20534 0.90429 0.81922 0.75610 1.90751 1.70769 1.30617 1.50100 1.48570 1.07210 1.06090 1.73716 1.22155 0.96629 0.81465 1.02063 1.22547 0.91795 0.96866 1.03944 1.22624 0.93895 0.95983 1.02314 0.87273 1.20047 0.85009 0.83789 0.80896 1.90727 1.87409 1.26875 1.36387 1.46177 1.06534 1.33444 1.50808 1.22276 0.80364 0.98898 1.00142 1.21129 0.86612 0.91266 0.96657 0.94516 1.22607 0.97669 0.96149 1.00023 1.23005 0.95477 0.99927 1.00322 1.21448 0.97345 0.83452 0.93006 1.44490 1.12483 1.18108 1.56212 1.19021 1.12227 0.93981 1.10990 0.90613 1.24928 0.99500 0.98450 0.97007 1.69948 1.25155 1.38027 1.22940 0.86073 0.78487 0.83622 0.77747 1.20371 1.21698 1.21591 1.22181 0.81042 0.95514 1.01774 0.88768 0.88808 0.90127 0.90943 0.90811 0.88774 0.89280 0.77028 0.91513 0.91459 0.92356 0.91830 0.92299 0.92323 0.91000 0.95582 0.93622 0.89534 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 9.90 36.01 0.36 -0.60 16 2 C 0.53 5.38 7.96 -10.98 -0.09 5.29 16 3 O -0.55 -8.05 17.36 5.56 0.10 -7.96 16 4 N -0.62 -5.65 3.33 -170.22 -0.57 -6.22 16 5 C 0.10 0.63 6.16 -3.07 -0.02 0.61 16 6 C -0.11 -0.93 6.07 -24.90 -0.15 -1.08 16 7 C -0.13 -1.21 3.45 -89.37 -0.31 -1.51 16 8 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 9 C 0.52 7.28 7.17 -10.99 -0.08 7.20 16 10 O -0.54 -9.86 15.71 5.55 0.09 -9.77 16 11 N -0.72 -10.09 5.33 -60.29 -0.32 -10.41 16 12 C 0.11 2.02 5.07 -4.04 -0.02 2.00 16 13 C 0.15 2.94 3.22 -66.96 -0.22 2.72 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.13 -2.09 6.10 -24.90 -0.15 -2.24 16 16 C -0.15 -2.73 7.08 -24.59 -0.17 -2.90 16 17 C 0.17 4.09 5.41 -2.53 -0.01 4.08 16 18 N -0.59 -14.47 3.13 -162.58 -0.51 -14.97 16 19 C -0.23 -6.35 9.76 -15.06 -0.15 -6.49 16 20 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 21 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 22 N -0.91 -26.56 10.58 55.49 0.59 -25.97 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.12 1.18 6.38 -2.28 -0.01 1.17 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.28 7.07 -51.93 -0.37 -0.08 16 31 H 0.07 0.32 7.77 -51.93 -0.40 -0.09 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.95 7.39 -51.93 -0.38 0.57 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.40 4.42 8.34 -40.82 -0.34 4.08 16 36 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 37 H 0.07 1.43 7.92 -51.93 -0.41 1.02 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.05 7.81 -51.93 -0.41 0.64 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 42 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 43 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.09 0.88 8.04 -51.93 -0.42 0.46 16 46 H 0.08 0.85 8.04 -51.93 -0.42 0.44 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -34.48 370.35 -8.88 -43.36 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.69 Total: 1.29 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.12 Total: 8.10 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.81 Total: -57.57 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.18 Total: -17.73 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.48 -8.88 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028292011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.531 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds