Wall clock time and date at job start Tue Mar 31 2020 04:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 120.00175 * 2 1 4 4 N 1.34781 * 119.99808 * 179.97438 * 2 1 3 5 5 C 1.47016 * 125.64888 * 0.02562 * 4 2 1 6 6 C 1.54324 * 107.27062 * 178.90618 * 5 4 2 7 7 C 1.55155 * 103.10444 * 337.72148 * 6 5 4 8 8 H 1.09000 * 111.00260 * 277.51786 * 7 6 5 9 9 C 1.50692 * 111.01005 * 153.66307 * 7 6 5 10 10 O 1.21291 * 119.99591 * 0.02562 * 9 7 6 11 11 N 1.34770 * 120.00453 * 179.97438 * 9 7 6 12 12 C 1.46507 * 120.00246 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47015 * 185.13927 * 12 11 9 14 14 H 1.09002 * 109.87282 * 303.57199 * 13 12 11 15 15 C 1.54321 * 109.88560 * 64.58925 * 13 12 11 16 16 C 1.55157 * 102.94223 * 141.60911 * 15 13 12 17 17 C 1.54902 * 101.58205 * 324.49900 * 16 15 13 18 18 N 1.47022 * 109.88024 * 182.39876 * 13 12 11 19 19 C 1.36930 * 125.64886 * 61.59729 * 18 13 12 20 20 H 1.07998 * 120.00310 * 14.75209 * 19 18 13 21 21 C 1.38818 * 119.99905 * 194.75168 * 19 18 13 22 22 N 1.31619 * 120.00039 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47331 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46878 * 120.00423 * 23 21 19 26 26 H 1.48498 * 109.47396 * 240.00165 * 23 21 19 27 27 C 1.47425 * 125.64686 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.47311 * 269.99911 * 1 2 3 29 29 H 1.08993 * 109.47168 * 30.00589 * 1 2 3 30 30 H 1.09003 * 109.46920 * 150.00223 * 1 2 3 31 31 H 1.09002 * 109.88297 * 59.48914 * 5 4 2 32 32 H 1.09000 * 109.88471 * 298.32130 * 5 4 2 33 33 H 1.09007 * 110.72112 * 96.17331 * 6 5 4 34 34 H 1.08995 * 110.72521 * 219.26529 * 6 5 4 35 35 H 0.97001 * 119.99881 * 0.02562 * 11 9 7 36 36 H 1.09003 * 109.46592 * 305.13382 * 12 11 9 37 37 H 1.08999 * 109.46801 * 65.13825 * 12 11 9 38 38 H 1.08997 * 110.72001 * 259.97268 * 15 13 12 39 39 H 1.08998 * 110.72143 * 23.24237 * 15 13 12 40 40 H 1.09005 * 111.00328 * 82.57698 * 16 15 13 41 41 H 1.09007 * 111.00087 * 206.38430 * 16 15 13 42 42 H 1.09003 * 110.36560 * 155.84920 * 17 16 15 43 43 H 1.09000 * 110.36571 * 278.05941 * 17 16 15 44 44 H 0.96999 * 120.00114 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.36847 * 323.00026 * 27 4 2 46 46 H 1.09004 * 110.36761 * 85.21252 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5747 -2.5066 0.0006 6 6 2.7281 -3.5316 -0.0269 7 6 3.9100 -2.7155 -0.6137 8 1 3.8591 -2.6817 -1.7020 9 6 5.2324 -3.2730 -0.1540 10 8 5.2614 -4.2387 0.5793 11 7 6.3828 -2.6992 -0.5584 12 6 7.6685 -3.2416 -0.1119 13 6 8.8014 -2.3389 -0.6043 14 1 8.7516 -2.2397 -1.6886 15 6 8.6891 -0.9484 0.0556 16 6 10.1699 -0.5708 0.3245 17 6 10.7827 -1.9485 0.6790 18 7 10.0995 -2.9056 -0.2100 19 6 10.5918 -4.1214 -0.6029 20 1 10.1388 -4.6454 -1.4315 21 6 11.6734 -4.6806 0.0640 22 7 12.2252 -4.0423 1.0741 23 14 12.3446 -6.3396 -0.4715 24 1 11.5538 -6.8456 -1.6220 25 1 13.7660 -6.1915 -0.8752 26 1 12.2481 -7.3002 0.6568 27 6 3.6480 -1.3124 0.0001 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.9480 -2.6299 -0.8827 32 1 0.9784 -2.6436 0.9027 33 1 2.9607 -3.8775 0.9803 34 1 2.4811 -4.3728 -0.6744 35 1 6.3596 -1.9271 -1.1452 36 1 7.6858 -3.2851 0.9771 37 1 7.8004 -4.2445 -0.5179 38 1 8.2267 -0.2344 -0.6258 39 1 8.1308 -1.0088 0.9898 40 1 10.6352 -0.1543 -0.5689 41 1 10.2505 0.1210 1.1631 42 1 11.8551 -1.9482 0.4837 43 1 10.5882 -2.1928 1.7233 44 1 12.9807 -4.4332 1.5403 45 1 4.1056 -0.5380 -0.6156 46 1 4.0343 -1.2642 1.0182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028292011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:53 Heat of formation + Delta-G solvation = -75.716627 kcal Electronic energy + Delta-G solvation = -25914.461567 eV Core-core repulsion = 22224.321368 eV Total energy + Delta-G solvation = -3690.140199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50205 -40.46243 -39.34302 -38.05406 -35.78298 -34.42399 -33.27676 -31.49000 -30.79946 -30.62051 -29.38844 -26.76728 -25.84947 -24.71467 -23.04958 -22.02865 -21.33810 -20.87148 -20.30602 -18.94373 -18.33211 -18.06435 -17.33939 -16.91946 -16.67562 -16.55191 -16.06872 -15.85359 -15.65239 -15.27975 -14.75130 -14.50679 -14.35760 -14.01684 -13.84677 -13.72163 -13.67152 -13.42728 -13.25439 -13.00948 -12.95548 -12.87789 -12.70083 -12.57964 -12.30986 -11.98924 -11.88685 -11.84269 -11.74225 -11.51091 -11.42569 -11.11466 -10.86676 -10.70384 -10.09189 -9.74393 -8.87670 -7.90029 -5.27836 1.43217 1.45004 1.50301 1.54567 1.60136 1.91267 2.23611 2.49171 3.27828 3.29975 3.45460 3.69215 3.83367 3.88850 3.94742 3.97613 4.18127 4.20053 4.25685 4.27093 4.44717 4.51703 4.52573 4.57157 4.65401 4.71453 4.77152 4.82535 4.95302 4.98268 4.98512 5.10786 5.12483 5.14057 5.19157 5.26508 5.36283 5.45513 5.56443 5.64018 5.75864 6.21303 6.47970 6.55684 7.07195 7.10130 7.24026 7.74461 8.40739 9.21335 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002913 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.093889 B = 9608.929406 C =10589.004814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.517 3.483 3 O -0.601 6.601 4 N -0.620 5.620 5 C 0.103 3.897 6 C -0.114 4.114 7 C -0.111 4.111 8 H 0.139 0.861 9 C 0.518 3.482 10 O -0.584 6.584 11 N -0.706 5.706 12 C 0.129 3.871 13 C 0.148 3.852 14 H 0.053 0.947 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.174 3.826 18 N -0.611 5.611 19 C -0.238 4.238 20 H 0.079 0.921 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.289 1.289 26 H -0.295 1.295 27 C 0.117 3.883 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.415 0.585 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.036 0.964 43 H -0.009 1.009 44 H 0.247 0.753 45 H 0.087 0.913 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.419 6.881 -5.878 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.309 3.691 3 O -0.482 6.482 4 N -0.354 5.354 5 C -0.019 4.019 6 C -0.152 4.152 7 C -0.133 4.133 8 H 0.157 0.843 9 C 0.304 3.696 10 O -0.463 6.463 11 N -0.358 5.358 12 C 0.003 3.997 13 C 0.041 3.959 14 H 0.071 0.929 15 C -0.151 4.151 16 C -0.173 4.173 17 C 0.049 3.951 18 N -0.335 5.335 19 C -0.367 4.367 20 H 0.096 0.904 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.216 1.216 26 H -0.223 1.223 27 C -0.007 4.007 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.252 0.748 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.009 0.991 44 H 0.057 0.943 45 H 0.105 0.895 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.952 6.677 -5.315 26.371 hybrid contribution 1.274 -0.940 0.156 1.591 sum -23.678 5.737 -5.159 24.903 Atomic orbital electron populations 1.21917 0.87445 1.06416 1.06179 1.21406 0.92183 0.81166 0.74322 1.90723 1.72160 1.32565 1.52783 1.48683 1.06731 1.07126 1.72849 1.22337 0.95959 0.79014 1.04564 1.22576 0.91889 0.97897 1.02826 1.22561 0.91246 0.95626 1.03837 0.84292 1.20844 0.86238 0.82878 0.79632 1.90714 1.88164 1.29104 1.38366 1.45922 1.05023 1.33910 1.50979 1.21665 0.82675 0.97533 0.97858 1.21332 0.84395 0.92575 0.97600 0.92890 1.22594 0.96720 0.94981 1.00832 1.22874 0.96027 0.96714 1.01648 1.21247 0.95849 0.86796 0.91199 1.44753 1.14993 1.17759 1.56042 1.19345 1.11783 0.94876 1.10692 0.90367 1.25716 1.00407 1.01803 0.97611 1.70152 1.25655 1.39348 1.24333 0.85099 0.77806 0.79611 0.77391 1.18937 1.21601 1.22261 1.22070 0.82264 0.95594 1.00724 0.87340 0.88654 0.87238 0.87604 0.89119 0.91229 0.87558 0.74829 0.94735 0.94535 0.87868 0.91890 0.91058 0.90119 0.94598 0.99124 0.94330 0.89502 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.90 71.24 0.71 -0.55 16 2 C 0.52 9.46 7.96 87.66 0.70 10.16 16 3 O -0.60 -17.29 17.36 -3.04 -0.05 -17.34 16 4 N -0.62 -9.64 3.33 -810.85 -2.70 -12.34 16 5 C 0.10 0.90 6.16 86.73 0.53 1.43 16 6 C -0.11 -1.59 6.07 31.78 0.19 -1.39 16 7 C -0.11 -1.86 3.45 -9.99 -0.03 -1.90 16 8 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 9 C 0.52 14.13 7.17 87.66 0.63 14.76 16 10 O -0.58 -21.80 15.71 -3.06 -0.05 -21.84 16 11 N -0.71 -19.05 5.33 -463.05 -2.47 -21.52 16 12 C 0.13 4.90 5.07 86.38 0.44 5.34 16 13 C 0.15 5.62 3.22 45.34 0.15 5.77 16 14 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 15 C -0.11 -3.49 6.10 31.78 0.19 -3.30 16 16 C -0.13 -4.72 7.08 31.98 0.23 -4.50 16 17 C 0.17 8.56 5.41 86.85 0.47 9.03 16 18 N -0.61 -30.68 3.13 -668.28 -2.09 -32.77 16 19 C -0.24 -13.23 9.76 84.04 0.82 -12.41 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.06 -3.54 5.47 84.86 0.46 -3.08 16 22 N -0.95 -57.55 10.58 21.65 0.23 -57.32 16 23 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 C 0.12 2.15 6.38 87.02 0.56 2.71 16 28 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.22 7.07 -2.39 -0.02 0.20 16 31 H 0.11 0.32 7.77 -2.39 -0.02 0.31 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 1.35 7.39 -2.38 -0.02 1.33 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.41 8.17 8.34 -92.71 -0.77 7.39 16 36 H 0.03 1.52 8.08 -2.39 -0.02 1.50 16 37 H 0.04 1.60 7.92 -2.39 -0.02 1.58 16 38 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 39 H 0.06 1.97 7.81 -2.39 -0.02 1.95 16 40 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 42 H 0.04 1.99 6.94 -2.39 -0.02 1.97 16 43 H -0.01 -0.51 8.06 -2.39 -0.02 -0.53 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.09 1.60 8.04 -2.39 -0.02 1.58 16 46 H 0.06 1.24 8.04 -2.39 -0.02 1.22 16 Total: -1.00 -81.36 370.35 1.13 -80.23 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.20 Total: 12.40 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 6.04 Total: 22.07 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -7.03 Total: -123.94 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.10 Total: -39.19 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -81.36 1.13 -80.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028292011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.513 kcal (2) G-P(sol) polarization free energy of solvation -81.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds