Wall clock time and date at job start Tue Mar 31 2020 04:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99532 * 2 1 4 4 N 1.34772 * 120.00107 * 179.97438 * 2 1 3 5 5 C 1.47290 * 125.79588 * 0.02562 * 4 2 1 6 6 C 1.54326 * 107.31012 * 178.92396 * 5 4 2 7 7 C 1.55162 * 102.93706 * 337.81530 * 6 5 4 8 8 H 1.08995 * 111.03764 * 277.41122 * 7 6 5 9 9 C 1.50708 * 110.99732 * 153.57668 * 7 6 5 10 10 O 1.21274 * 119.99908 * 6.34994 * 9 7 6 11 11 N 1.34776 * 119.99440 * 186.34635 * 9 7 6 12 12 C 1.46499 * 119.99823 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47296 * 185.94776 * 12 11 9 14 14 H 1.08999 * 109.87667 * 300.77216 * 13 12 11 15 15 C 1.54323 * 109.88290 * 179.75148 * 13 12 11 16 16 C 1.55154 * 102.94120 * 218.39478 * 15 13 12 17 17 C 1.54910 * 101.58389 * 35.50268 * 16 15 13 18 18 N 1.47022 * 109.87724 * 61.78590 * 13 12 11 19 19 C 1.36938 * 125.65121 * 298.31311 * 18 13 12 20 20 H 1.08003 * 119.99862 * 335.75798 * 19 18 13 21 21 C 1.38810 * 120.00481 * 155.76381 * 19 18 13 22 22 N 1.31616 * 120.00514 * 160.15397 * 21 19 18 23 23 Si 1.86802 * 119.99690 * 340.15226 * 21 19 18 24 24 H 1.48502 * 109.46794 * 84.15428 * 23 21 19 25 25 H 1.48496 * 109.47061 * 204.15489 * 23 21 19 26 26 H 1.48501 * 109.47325 * 324.15765 * 23 21 19 27 27 C 1.47422 * 125.64986 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.46761 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47024 * 299.99451 * 1 2 3 30 30 H 1.08996 * 109.47585 * 60.00395 * 1 2 3 31 31 H 1.09006 * 109.85780 * 59.49717 * 5 4 2 32 32 H 1.09000 * 110.00131 * 298.42877 * 5 4 2 33 33 H 1.09000 * 110.72181 * 219.45573 * 6 5 4 34 34 H 1.08992 * 110.87129 * 96.24735 * 6 5 4 35 35 H 0.97008 * 120.00123 * 0.02562 * 11 9 7 36 36 H 1.08998 * 109.47369 * 305.95604 * 12 11 9 37 37 H 1.09005 * 109.46435 * 65.95467 * 12 11 9 38 38 H 1.08997 * 110.72147 * 336.75603 * 15 13 12 39 39 H 1.09001 * 110.71800 * 99.85514 * 15 13 12 40 40 H 1.09003 * 111.00450 * 153.57893 * 16 15 13 41 41 H 1.09006 * 111.00553 * 277.38770 * 16 15 13 42 42 H 1.08999 * 110.36660 * 81.82615 * 17 16 15 43 43 H 1.09008 * 110.36580 * 204.04352 * 17 16 15 44 44 H 0.96995 * 120.00151 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.36903 * 85.26299 * 27 4 2 46 46 H 1.09000 * 110.36452 * 323.05241 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5771 -2.5106 0.0006 6 6 2.7324 -3.5333 -0.0264 7 6 3.9110 -2.7107 -0.6111 8 1 3.8622 -2.6763 -1.6994 9 6 5.2356 -3.2620 -0.1498 10 8 5.2745 -4.2932 0.4873 11 7 6.3769 -2.6088 -0.4453 12 6 7.6645 -3.1443 0.0036 13 6 8.7759 -2.1471 -0.3302 14 1 8.8029 -1.9685 -1.4051 15 6 10.1365 -2.6994 0.1445 16 6 10.8581 -1.4337 0.6780 17 6 9.6791 -0.6396 1.2936 18 7 8.5425 -0.8818 0.3812 19 6 7.4537 -0.0664 0.2233 20 1 6.8878 -0.0934 -0.6962 21 6 7.0775 0.7949 1.2448 22 7 6.3104 1.8317 0.9824 23 14 7.6600 0.4824 2.9919 24 1 9.0160 1.0603 3.1724 25 1 6.7193 1.1187 3.9486 26 1 7.7079 -0.9804 3.2436 27 6 3.6480 -1.3123 0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5137 -0.8900 31 1 0.9510 -2.6352 -0.8830 32 1 0.9791 -2.6505 0.9011 33 1 2.4886 -4.3735 -0.6766 34 1 2.9666 -3.8812 0.9796 35 1 6.3457 -1.7838 -0.9546 36 1 7.6344 -3.3078 1.0808 37 1 7.8608 -4.0898 -0.5020 38 1 9.9993 -3.4299 0.9417 39 1 10.6864 -3.1379 -0.6882 40 1 11.5931 -1.6948 1.4395 41 1 11.3227 -0.8766 -0.1356 42 1 9.4514 -1.0119 2.2924 43 1 9.9162 0.4238 1.3307 44 1 6.0479 2.4337 1.6961 45 1 4.0342 -1.2649 1.0182 46 1 4.1056 -0.5373 -0.6149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028292012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:56 Heat of formation + Delta-G solvation = -42.879015 kcal Electronic energy + Delta-G solvation = -27218.128091 eV Core-core repulsion = 23529.411837 eV Total energy + Delta-G solvation = -3688.716254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13880 -39.01513 -37.95151 -36.69708 -33.97184 -32.64535 -32.01724 -29.98039 -29.78334 -29.62161 -28.32503 -25.05044 -24.06639 -23.39140 -21.85749 -20.93215 -19.81180 -19.24030 -19.01876 -17.34577 -16.83878 -16.68666 -15.73668 -15.56742 -15.33815 -15.12114 -14.95132 -14.55377 -14.02690 -13.44883 -13.32114 -13.26524 -12.94914 -12.90462 -12.56644 -12.55687 -12.48254 -12.35283 -11.82877 -11.70759 -11.51775 -11.32474 -11.19564 -11.03821 -10.93023 -10.79403 -10.65310 -10.52161 -10.05577 -9.96949 -9.66660 -9.48474 -9.29900 -8.70738 -8.45870 -8.36774 -7.04616 -5.95589 -3.32188 2.87188 2.96659 3.24812 3.34248 3.49603 3.51425 3.76066 4.44408 4.53196 4.62997 4.88633 4.94657 4.99339 5.18750 5.21404 5.25537 5.28429 5.34694 5.38338 5.42513 5.44104 5.54503 5.59531 5.78055 5.83146 5.89540 5.91241 6.07080 6.07936 6.10577 6.21692 6.24162 6.29830 6.34735 6.37880 6.43684 6.64481 6.76354 6.82487 7.06882 7.67968 7.71490 8.12330 8.26779 8.41920 8.70733 8.79067 9.65342 10.17098 11.18030 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.005324 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.676633 B = 5257.830107 C = 6617.416340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.517 3.483 3 O -0.525 6.525 4 N -0.622 5.622 5 C 0.101 3.899 6 C -0.110 4.110 7 C -0.124 4.124 8 H 0.106 0.894 9 C 0.522 3.478 10 O -0.560 6.560 11 N -0.697 5.697 12 C 0.114 3.886 13 C 0.145 3.855 14 H 0.048 0.952 15 C -0.123 4.123 16 C -0.131 4.131 17 C 0.112 3.888 18 N -0.601 5.601 19 C -0.250 4.250 20 H 0.087 0.913 21 C 0.036 3.964 22 N -0.890 5.890 23 Si 0.879 3.121 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.277 1.277 27 C 0.123 3.877 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.411 0.589 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.265 0.735 45 H 0.076 0.924 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 -10.452 -4.393 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.306 3.694 3 O -0.400 6.400 4 N -0.358 5.358 5 C -0.022 4.022 6 C -0.148 4.148 7 C -0.146 4.146 8 H 0.124 0.876 9 C 0.307 3.693 10 O -0.440 6.440 11 N -0.349 5.349 12 C -0.012 4.012 13 C 0.037 3.963 14 H 0.066 0.934 15 C -0.161 4.161 16 C -0.169 4.169 17 C -0.013 4.013 18 N -0.327 5.327 19 C -0.377 4.377 20 H 0.104 0.896 21 C -0.166 4.166 22 N -0.531 5.531 23 Si 0.710 3.290 24 H -0.213 1.213 25 H -0.232 1.232 26 H -0.202 1.202 27 C 0.000 4.000 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.544 -10.264 -3.906 12.302 hybrid contribution 0.172 0.236 0.981 1.024 sum -5.372 -10.028 -2.925 11.746 Atomic orbital electron populations 1.21860 0.91890 1.03895 1.05013 1.20473 0.90131 0.82309 0.76484 1.90859 1.70298 1.30225 1.48649 1.48635 1.07490 1.05579 1.74110 1.22120 0.96477 0.82104 1.01530 1.22498 0.92213 0.96673 1.03427 1.22493 0.93503 0.96623 1.02019 0.87615 1.20037 0.85329 0.84186 0.79729 1.90632 1.87550 1.24746 1.41023 1.46104 1.05609 1.27556 1.55599 1.21939 0.83461 0.96021 0.99781 1.21318 0.91873 0.86470 0.96591 0.93393 1.22511 0.95567 0.97543 1.00528 1.22713 0.97399 0.96597 1.00206 1.21993 0.87331 0.98712 0.93292 1.44911 1.20250 1.19762 1.47749 1.18289 1.04724 1.15127 0.99552 0.89578 1.25086 0.97114 0.96937 0.97412 1.69790 1.37846 1.12915 1.32578 0.87011 0.77095 0.78015 0.86892 1.21285 1.23231 1.20236 1.22093 0.80258 0.95149 1.02513 0.90786 0.88974 0.88945 0.91325 0.91265 0.89687 0.89236 0.75003 0.91958 0.93021 0.91458 0.91356 0.91782 0.91252 0.95915 0.92450 0.92496 0.90584 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.22 36.01 0.37 -1.39 16 2 C 0.52 8.53 7.96 -10.99 -0.09 8.45 16 3 O -0.53 -11.76 17.35 5.56 0.10 -11.67 16 4 N -0.62 -9.48 3.34 -170.33 -0.57 -10.04 16 5 C 0.10 1.09 5.83 -2.92 -0.02 1.07 16 6 C -0.11 -1.33 6.03 -24.89 -0.15 -1.48 16 7 C -0.12 -1.82 3.43 -89.64 -0.31 -2.13 16 8 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 9 C 0.52 9.35 7.16 -10.98 -0.08 9.27 16 10 O -0.56 -11.39 15.78 5.56 0.09 -11.30 16 11 N -0.70 -12.75 4.76 -60.29 -0.29 -13.04 16 12 C 0.11 2.06 5.18 -4.04 -0.02 2.04 16 13 C 0.14 2.60 3.33 -66.95 -0.22 2.38 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 15 C -0.12 -1.83 6.48 -24.90 -0.16 -1.99 16 16 C -0.13 -2.07 7.08 -24.58 -0.17 -2.25 16 17 C 0.11 2.33 4.74 -2.35 -0.01 2.32 16 18 N -0.60 -13.37 2.87 -162.31 -0.47 -13.84 16 19 C -0.25 -6.42 8.86 -15.06 -0.13 -6.55 16 20 H 0.09 2.28 6.55 -52.48 -0.34 1.93 16 21 C 0.04 1.00 5.45 -17.43 -0.10 0.91 16 22 N -0.89 -26.79 13.97 55.49 0.78 -26.01 16 23 Si 0.88 22.75 24.33 -169.99 -4.14 18.61 16 24 H -0.29 -7.15 6.66 56.52 0.38 -6.77 16 25 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 26 H -0.28 -7.20 6.74 56.52 0.38 -6.82 16 27 C 0.12 2.17 6.32 -2.55 -0.02 2.16 16 28 H 0.07 0.57 6.62 -51.93 -0.34 0.23 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.57 8.03 -51.93 -0.42 0.16 16 32 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.24 7.49 -51.93 -0.39 0.85 16 35 H 0.41 7.67 5.93 -40.82 -0.24 7.43 16 36 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.51 5.46 -51.93 -0.28 0.23 16 43 H 0.06 1.29 7.14 -51.92 -0.37 0.92 16 44 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 45 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 46 H 0.10 1.96 8.04 -51.93 -0.42 1.54 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -34.58 359.92 -7.64 -42.23 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.46 Total: 6.84 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -1.11 Total: 12.80 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.55 Total: -62.93 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.18 Total: -22.97 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.14 Total: 18.61 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.58 -7.64 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028292012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.653 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds