Wall clock time and date at job start Tue Mar 31 2020 04:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47323 * 2 1 4 4 C 1.46761 * 124.35430 * 89.99917 * 3 2 1 5 5 C 1.54483 * 105.47489 * 162.98482 * 4 3 2 6 6 H 1.09000 * 110.96713 * 267.29370 * 5 4 3 7 7 C 1.50702 * 110.96790 * 143.53352 * 5 4 3 8 8 O 1.21289 * 120.00195 * 0.02562 * 7 5 4 9 9 N 1.34775 * 119.99888 * 179.97438 * 7 5 4 10 10 C 1.46503 * 120.00027 * 359.97438 * 9 7 5 11 11 C 1.46504 * 119.99867 * 180.02562 * 9 7 5 12 12 C 1.52992 * 109.47432 * 86.95051 * 11 9 7 13 13 H 1.09001 * 112.74344 * 42.75204 * 12 11 9 14 14 C 1.53504 * 113.46791 * 271.93186 * 12 11 9 15 15 C 1.53500 * 83.34385 * 219.14919 * 14 12 11 16 16 N 1.47062 * 113.47064 * 173.49747 * 12 11 9 17 17 C 1.36946 * 136.05741 * 321.93552 * 16 12 11 18 18 H 1.07997 * 119.99328 * 33.88670 * 17 16 12 19 19 C 1.38804 * 120.00076 * 213.88661 * 17 16 12 20 20 N 1.31621 * 120.00040 * 191.09212 * 19 17 16 21 21 Si 1.86802 * 120.00129 * 11.09796 * 19 17 16 22 22 H 1.48503 * 109.47196 * 84.25557 * 21 19 17 23 23 H 1.48499 * 109.47156 * 204.25573 * 21 19 17 24 24 H 1.48500 * 109.47243 * 324.25782 * 21 19 17 25 25 C 1.54619 * 101.76402 * 25.41584 * 5 4 3 26 26 C 1.34420 * 124.34661 * 269.70185 * 3 2 1 27 27 O 1.21280 * 124.94276 * 0.38271 * 26 3 2 28 28 H 1.09001 * 109.46888 * 300.00411 * 1 2 3 29 29 H 1.09004 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47092 * 60.00217 * 1 2 3 31 31 H 1.09010 * 109.47092 * 120.00054 * 2 1 3 32 32 H 1.08995 * 109.47530 * 239.99430 * 2 1 3 33 33 H 1.09001 * 110.24693 * 281.98914 * 4 3 2 34 34 H 1.09001 * 110.24822 * 43.89545 * 4 3 2 35 35 H 1.08996 * 109.46686 * 94.16934 * 10 9 7 36 36 H 1.08995 * 109.46952 * 214.17224 * 10 9 7 37 37 H 1.08996 * 109.47141 * 334.17099 * 10 9 7 38 38 H 1.09005 * 109.46750 * 206.94722 * 11 9 7 39 39 H 1.09001 * 109.46802 * 326.94605 * 11 9 7 40 40 H 1.08996 * 114.20362 * 332.74122 * 14 12 11 41 41 H 1.09005 * 114.20481 * 105.56382 * 14 12 11 42 42 H 1.08993 * 113.47069 * 271.28359 * 15 14 12 43 43 H 1.09000 * 113.51436 * 140.85175 * 15 14 12 44 44 H 0.97001 * 120.00090 * 179.97438 * 20 19 17 45 45 H 1.09003 * 110.48810 * 93.88211 * 25 5 4 46 46 H 1.09002 * 110.48822 * 216.52117 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 3.1745 3.3441 0.7485 6 1 4.2332 3.1033 0.8447 7 6 2.8375 4.5989 1.5121 8 8 1.9713 4.5781 2.3608 9 7 3.4993 5.7439 1.2525 10 6 4.5467 5.7686 0.2285 11 6 3.1720 6.9636 1.9952 12 6 3.9876 7.0074 3.2889 13 1 5.0253 6.7074 3.1431 14 6 3.3046 6.2981 4.4665 15 6 3.8663 7.4783 5.2712 16 7 3.8414 8.2685 4.0311 17 6 3.7301 9.5949 3.7092 18 1 3.2132 9.8903 2.8082 19 6 4.2816 10.5596 4.5410 20 7 3.9932 11.8305 4.3565 21 14 5.4334 10.0542 5.9221 22 1 6.8115 9.9077 5.3887 23 1 5.4209 11.0938 6.9824 24 1 4.9833 8.7594 6.4931 25 6 2.7695 3.4753 -0.7379 26 6 2.2766 2.0942 -1.1098 27 8 2.1329 1.6901 -2.2442 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.3638 2.5308 1.6429 34 1 2.8310 1.5527 1.9389 35 1 4.1190 6.0906 -0.7209 36 1 5.3312 6.4635 0.5279 37 1 4.9691 4.7701 0.1167 38 1 3.4106 7.8352 1.3856 39 1 2.1088 6.9683 2.2356 40 1 2.2166 6.2765 4.4049 41 1 3.7432 5.3335 4.7225 42 1 4.8716 7.3033 5.6543 43 1 3.1827 7.8482 6.0354 44 1 4.3784 12.5046 4.9380 45 1 1.9745 4.2121 -0.8532 46 1 3.6327 3.7459 -1.3461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085627607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:02 Heat of formation + Delta-G solvation = 6.567217 kcal Electronic energy + Delta-G solvation = -26350.116438 eV Core-core repulsion = 22663.544334 eV Total energy + Delta-G solvation = -3686.572104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14087 -39.61124 -38.22157 -36.55141 -35.43906 -34.20257 -32.32748 -30.36199 -28.74585 -28.25263 -27.99180 -26.52873 -24.37806 -23.32326 -23.03598 -22.06639 -19.75806 -19.41760 -19.03975 -17.67243 -17.04947 -16.81258 -16.22388 -16.00917 -15.57743 -15.23847 -15.14547 -14.35631 -14.21980 -13.93361 -13.80836 -13.68527 -13.44821 -13.23098 -12.98066 -12.86920 -12.61379 -12.39641 -12.30790 -12.18615 -11.88555 -11.78197 -11.63081 -11.55206 -11.39528 -11.08622 -10.83987 -10.26145 -10.17362 -10.12037 -9.86106 -9.67858 -9.30008 -9.02845 -8.73326 -8.35595 -6.94034 -5.99310 -3.44893 2.29401 2.52802 2.64396 3.01254 3.35998 3.44537 3.44836 3.90769 4.03195 4.36552 4.52193 4.55233 4.65918 4.78072 4.84401 4.88894 5.03126 5.06627 5.16030 5.22039 5.25249 5.33207 5.34512 5.36029 5.41561 5.53225 5.61244 5.65380 5.75607 5.85203 5.86986 5.93692 6.18467 6.21892 6.34373 6.43618 6.53337 6.61874 6.64685 6.78373 7.13980 7.42674 7.47251 7.86986 8.15758 8.31688 8.66088 9.59112 10.39948 11.17009 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.031320 B = 0.002936 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.778696 B = 9533.014784 C = 9953.302022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.619 5.619 4 C 0.117 3.883 5 C -0.123 4.123 6 H 0.116 0.884 7 C 0.522 3.478 8 O -0.526 6.526 9 N -0.605 5.605 10 C 0.073 3.927 11 C 0.118 3.882 12 C 0.123 3.877 13 H 0.043 0.957 14 C -0.143 4.143 15 C 0.106 3.894 16 N -0.613 5.613 17 C -0.230 4.230 18 H 0.089 0.911 19 C 0.030 3.970 20 N -0.913 5.913 21 Si 0.864 3.136 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.244 1.244 25 C -0.144 4.144 26 C 0.520 3.480 27 O -0.533 6.533 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.039 0.961 43 H 0.047 0.953 44 H 0.264 0.736 45 H 0.110 0.890 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -22.579 -8.004 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.007 4.007 5 C -0.145 4.145 6 H 0.134 0.866 7 C 0.308 3.692 8 O -0.402 6.402 9 N -0.338 5.338 10 C -0.071 4.071 11 C -0.005 4.005 12 C 0.016 3.984 13 H 0.061 0.939 14 C -0.181 4.181 15 C -0.019 4.019 16 N -0.341 5.341 17 C -0.357 4.357 18 H 0.106 0.894 19 C -0.170 4.170 20 N -0.556 5.556 21 Si 0.693 3.307 22 H -0.213 1.213 23 H -0.225 1.225 24 H -0.169 1.169 25 C -0.184 4.184 26 C 0.308 3.692 27 O -0.409 6.409 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.128 0.872 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.281 -22.418 -8.141 23.885 hybrid contribution 1.047 0.121 0.801 1.323 sum -0.235 -22.298 -7.341 23.476 Atomic orbital electron populations 1.22168 0.95634 1.02381 1.02750 1.21353 0.94577 0.80844 1.03138 1.48383 1.65664 1.14025 1.07317 1.22013 1.00797 0.91080 0.86764 1.22238 1.02425 0.94584 0.95291 0.86616 1.19935 0.81913 0.84104 0.83258 1.90726 1.31794 1.84560 1.33132 1.47851 1.37192 1.10325 1.38428 1.21919 0.91105 1.02853 0.91179 1.21833 1.01064 0.84265 0.93333 1.22550 0.95785 0.88252 0.91810 0.93922 1.23500 1.00843 0.96024 0.97758 1.22764 0.97433 0.90014 0.91647 1.46001 1.85292 1.01117 1.01707 1.18488 1.29502 0.77182 1.10517 0.89390 1.25418 0.97717 0.94784 0.99086 1.69752 1.45943 0.99849 1.40042 0.87161 0.82109 0.79132 0.82264 1.21334 1.22465 1.16865 1.22386 1.04353 0.96591 0.95070 1.20785 0.76716 0.87317 0.84396 1.90729 1.53967 1.75158 1.21082 0.92110 0.91384 0.92229 0.90202 0.90006 0.88788 0.89741 0.92287 0.90522 0.91180 0.90056 0.89658 0.89504 0.92830 0.94330 0.93434 0.92599 0.87209 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.12 0.91 6.65 -4.05 -0.03 0.88 16 3 N -0.62 -5.61 2.93 -172.42 -0.51 -6.12 16 4 C 0.12 0.97 6.71 -3.12 -0.02 0.95 16 5 C -0.12 -1.03 2.53 -90.14 -0.23 -1.26 16 6 H 0.12 0.73 7.25 -51.93 -0.38 0.35 16 7 C 0.52 6.30 6.94 -10.99 -0.08 6.22 16 8 O -0.53 -8.13 14.08 5.55 0.08 -8.05 16 9 N -0.61 -7.46 2.88 -181.57 -0.52 -7.98 16 10 C 0.07 0.63 9.32 59.85 0.56 1.19 16 11 C 0.12 1.93 5.37 -4.04 -0.02 1.91 16 12 C 0.12 2.31 4.30 -72.39 -0.31 2.00 16 13 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.14 -2.58 7.11 -26.21 -0.19 -2.77 16 15 C 0.11 2.25 5.52 -8.50 -0.05 2.20 16 16 N -0.61 -14.43 3.13 -176.98 -0.55 -14.99 16 17 C -0.23 -6.35 10.98 -15.06 -0.17 -6.52 16 18 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 19 C 0.03 0.86 5.50 -17.43 -0.10 0.77 16 20 N -0.91 -27.89 13.97 55.49 0.78 -27.12 16 21 Si 0.86 21.57 27.26 -169.99 -4.63 16.93 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 24 H -0.24 -5.61 4.04 56.52 0.23 -5.38 16 25 C -0.14 -1.21 5.48 -26.75 -0.15 -1.36 16 26 C 0.52 5.70 8.02 -10.86 -0.09 5.61 16 27 O -0.53 -7.77 17.59 5.56 0.10 -7.67 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 33 H 0.09 0.94 6.96 -51.93 -0.36 0.58 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.07 0.43 5.79 -51.93 -0.30 0.13 16 38 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 39 H 0.09 1.55 7.22 -51.93 -0.38 1.18 16 40 H 0.09 1.64 7.78 -51.93 -0.40 1.23 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.81 6.52 -51.93 -0.34 0.48 16 43 H 0.05 1.03 7.98 -51.93 -0.41 0.62 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.11 0.99 7.89 -51.93 -0.41 0.58 16 46 H 0.11 0.73 7.46 -51.93 -0.39 0.34 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -34.37 365.19 -7.97 -42.34 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.73 Total: -1.82 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -0.47 Total: 8.98 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.81 Total: -56.21 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.18 Total: -15.72 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.63 Total: 16.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.37 -7.97 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085627607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.904 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds