Wall clock time and date at job start Tue Mar 31 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36594 * 126.58178 * 2 1 4 4 C 1.47520 * 125.77167 * 359.96145 * 3 2 1 5 5 O 1.21592 * 119.99800 * 354.26707 * 4 3 2 6 6 N 1.34779 * 120.00157 * 174.26422 * 4 3 2 7 7 C 1.46504 * 119.99791 * 184.30238 * 6 4 3 8 8 C 1.50697 * 109.47185 * 275.01479 * 7 6 4 9 9 H 1.08002 * 120.00200 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99906 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00037 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00138 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47247 * 89.99900 * 12 10 8 14 14 H 1.48494 * 109.47292 * 210.00269 * 12 10 8 15 15 H 1.48504 * 109.46881 * 330.00570 * 12 10 8 16 16 C 1.46501 * 120.00094 * 4.30928 * 6 4 3 17 17 C 1.53004 * 109.47275 * 83.61099 * 16 6 4 18 18 C 1.52992 * 109.46901 * 180.02562 * 17 16 6 19 19 N 1.46901 * 109.46929 * 179.97438 * 18 17 16 20 20 C 1.46909 * 110.99934 * 169.99661 * 19 18 17 21 21 C 1.46892 * 111.00267 * 293.95477 * 19 18 17 22 22 N 1.34405 * 108.46178 * 180.22294 * 3 2 1 23 23 N 1.28764 * 109.51894 * 359.59090 * 22 3 2 24 24 N 1.34814 * 126.57863 * 179.97438 * 2 1 3 25 25 C 1.46499 * 126.59787 * 0.04410 * 24 2 1 26 26 H 1.09006 * 109.47360 * 89.99414 * 1 2 3 27 27 H 1.08999 * 109.47526 * 209.99377 * 1 2 3 28 28 H 1.09005 * 109.47212 * 329.99940 * 1 2 3 29 29 H 1.08992 * 109.47002 * 35.01608 * 7 6 4 30 30 H 1.09001 * 109.46897 * 155.01686 * 7 6 4 31 31 H 0.97006 * 120.00235 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47144 * 203.61708 * 16 6 4 33 33 H 1.09004 * 109.46921 * 323.61592 * 16 6 4 34 34 H 1.08997 * 109.47082 * 300.00084 * 17 16 6 35 35 H 1.09004 * 109.46743 * 60.00385 * 17 16 6 36 36 H 1.09000 * 109.47735 * 299.99879 * 18 17 16 37 37 H 1.08999 * 109.47271 * 60.00072 * 18 17 16 38 38 H 1.09006 * 109.46713 * 60.00797 * 20 19 18 39 39 H 1.09000 * 109.46839 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47449 * 300.00503 * 20 19 18 41 41 H 1.09004 * 109.46915 * 60.00128 * 21 19 18 42 42 H 1.09001 * 109.47373 * 180.02562 * 21 19 18 43 43 H 1.09007 * 109.47115 * 299.99897 * 21 19 18 44 44 H 1.09002 * 109.46620 * 90.00330 * 25 24 2 45 45 H 1.08995 * 109.47709 * 210.00763 * 25 24 2 46 46 H 1.09000 * 109.47285 * 330.01323 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5026 -0.0008 5 8 0.6911 2.7643 -0.1067 6 7 2.7761 3.4970 0.1159 7 6 2.3254 4.8878 0.2100 8 6 2.1098 5.4407 -1.1752 9 1 2.2900 4.8183 -2.0392 10 6 1.6825 6.7413 -1.3394 11 7 1.4938 7.2237 -2.5482 12 14 1.3701 7.8177 0.1550 13 1 2.6183 8.5359 0.5173 14 1 0.3050 8.8035 -0.1589 15 1 0.9388 6.9690 1.2948 16 6 4.2076 3.1870 0.1486 17 6 4.7300 3.0381 -1.2818 18 6 6.2247 2.7138 -1.2475 19 7 6.7262 2.5702 -2.6208 20 6 8.1932 2.4945 -2.6404 21 6 6.1298 1.4005 -3.2795 22 7 3.5984 0.6789 -0.0050 23 7 3.6298 -0.6084 0.0006 24 7 2.3103 -1.0826 0.0005 25 6 1.8863 -2.4849 0.0002 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5137 28 1 -0.3634 0.8900 0.5139 29 1 1.3899 4.9296 0.7676 30 1 3.0818 5.4808 0.7243 31 1 1.1935 8.1388 -2.6638 32 1 4.7428 3.9941 0.6488 33 1 4.3652 2.2552 0.6918 34 1 4.1948 2.2310 -1.7818 35 1 4.5723 3.9699 -1.8249 36 1 6.7604 3.5206 -0.7473 37 1 6.3820 1.7819 -0.7045 38 1 8.5203 1.6336 -2.0572 39 1 8.5378 2.3890 -3.6691 40 1 8.6099 3.4049 -2.2095 41 1 5.0464 1.5157 -3.3133 42 1 6.5185 1.3175 -4.2944 43 1 6.3822 0.5001 -2.7194 44 1 1.7819 -2.8326 -1.0276 45 1 2.6326 -3.0903 0.5146 46 1 0.9288 -2.5751 0.5132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265969310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:37 Heat of formation + Delta-G solvation = 82.583544 kcal Electronic energy + Delta-G solvation = -26938.409360 eV Core-core repulsion = 23287.426322 eV Total energy + Delta-G solvation = -3650.983038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12413 -38.80657 -37.38154 -35.43188 -34.66326 -32.66298 -32.10328 -31.10758 -28.85857 -27.50421 -27.42259 -27.27888 -25.67220 -23.52026 -22.33289 -21.96246 -20.76722 -20.38878 -18.98220 -17.06616 -16.75613 -16.31651 -15.76555 -15.65681 -15.07698 -14.94568 -14.62945 -14.21884 -14.13871 -13.79868 -13.71247 -13.45370 -13.16028 -13.04439 -12.95530 -12.53297 -12.28030 -12.22190 -12.12220 -11.77387 -11.69352 -11.59149 -11.42511 -11.33084 -11.02977 -10.80265 -10.56919 -10.34159 -10.20844 -10.03727 -9.76816 -9.41198 -9.12086 -8.90518 -8.48098 -8.09369 -7.59850 -5.96813 -3.94185 1.24196 2.05498 2.08276 3.34443 3.41734 3.45152 3.75837 3.92584 4.22642 4.33757 4.35603 4.48910 4.70539 4.74839 4.90005 5.01194 5.25622 5.31496 5.35382 5.37072 5.49110 5.50588 5.59577 5.69765 5.70861 5.79917 5.87133 5.91341 5.95690 5.99207 6.03306 6.09302 6.22082 6.40700 6.47978 6.70241 6.74381 7.02708 7.06612 7.27512 7.34019 7.46884 7.70516 8.08559 8.34152 8.57771 8.98098 9.10286 9.63170 11.16698 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.005886 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.824566 B = 4756.118148 C = 7068.870338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.114 3.886 3 C -0.089 4.089 4 C 0.592 3.408 5 O -0.532 6.532 6 N -0.575 5.575 7 C 0.218 3.782 8 C -0.518 4.518 9 H 0.077 0.923 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.872 3.128 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.111 3.889 17 C -0.121 4.121 18 C 0.063 3.937 19 N -0.545 5.545 20 C 0.027 3.973 21 C 0.028 3.972 22 N -0.194 5.194 23 N -0.086 5.086 24 N -0.370 5.370 25 C 0.090 3.910 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.037 0.963 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.020 0.980 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.022 0.978 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -19.236 5.726 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.023 4.023 3 C -0.228 4.228 4 C 0.376 3.624 5 O -0.409 6.409 6 N -0.304 5.304 7 C 0.098 3.902 8 C -0.557 4.557 9 H 0.095 0.905 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.699 3.301 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.189 1.189 16 C -0.014 4.014 17 C -0.160 4.160 18 C -0.065 4.065 19 N -0.269 5.269 20 C -0.122 4.122 21 C -0.121 4.121 22 N -0.067 5.067 23 N -0.065 5.065 24 N -0.156 5.156 25 C -0.051 4.051 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.104 0.896 45 H 0.116 0.884 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.685 -18.923 5.321 20.462 hybrid contribution -0.774 -0.043 0.913 1.198 sum 4.911 -18.965 6.234 20.559 Atomic orbital electron populations 1.20664 0.84854 1.04867 1.04647 1.21879 0.96159 0.86329 0.97939 1.21596 0.88569 0.96180 1.16487 1.16672 0.85746 0.81995 0.77973 1.90745 1.16227 1.83050 1.50867 1.47724 1.05600 1.07591 1.69533 1.19732 0.95426 0.76520 0.98548 1.21307 1.45039 0.97682 0.91658 0.90492 1.24834 0.94920 0.97650 0.95570 1.69900 1.46901 1.15871 1.21008 0.86918 0.78361 0.80870 0.83982 1.20184 1.21111 1.18934 1.21754 0.80809 1.01572 0.97283 1.21866 0.93329 1.03213 0.97566 1.22041 0.96533 0.99933 0.87975 1.61932 1.05987 1.40467 1.18514 1.22350 0.88147 1.00376 1.01301 1.22356 1.00927 0.90536 0.98244 1.74755 1.19014 1.03110 1.09847 1.81943 0.96055 1.04355 1.24106 1.50186 1.06625 1.07414 1.51419 1.22068 1.02125 0.76561 1.04375 0.89055 0.91219 0.87011 0.94460 0.95375 0.92737 0.91239 0.89094 0.92249 0.89843 0.91193 0.94704 0.96145 0.91831 0.91495 0.91122 0.92101 0.95984 0.89592 0.88445 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.51 36.00 0.34 -0.68 16 2 C 0.11 1.61 7.02 -81.88 -0.57 1.03 16 3 C -0.09 -1.58 6.54 -83.55 -0.55 -2.12 16 4 C 0.59 12.72 7.57 -12.48 -0.09 12.63 16 5 O -0.53 -12.74 14.50 5.28 0.08 -12.66 16 6 N -0.58 -12.54 2.48 -176.29 -0.44 -12.98 16 7 C 0.22 5.40 4.19 -5.19 -0.02 5.38 16 8 C -0.52 -15.04 9.90 -34.44 -0.34 -15.38 16 9 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 11 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 12 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 16 C 0.11 2.02 5.03 -4.04 -0.02 1.99 16 17 C -0.12 -2.22 4.96 -26.73 -0.13 -2.36 16 18 C 0.06 0.98 4.96 -3.83 -0.02 0.96 16 19 N -0.55 -8.34 5.02 -251.25 -1.26 -9.60 16 20 C 0.03 0.33 9.57 60.07 0.57 0.90 16 21 C 0.03 0.40 9.32 60.06 0.56 0.96 16 22 N -0.19 -3.27 7.59 32.85 0.25 -3.02 16 23 N -0.09 -1.28 13.78 60.35 0.83 -0.45 16 24 N -0.37 -4.45 4.03 -63.60 -0.26 -4.71 16 25 C 0.09 0.55 11.33 59.85 0.68 1.23 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.50 7.18 -51.93 -0.37 0.13 16 28 H 0.11 1.51 6.57 -51.93 -0.34 1.17 16 29 H 0.04 0.97 6.70 -51.93 -0.35 0.62 16 30 H 0.03 0.66 7.21 -51.93 -0.37 0.28 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.07 1.18 7.78 -51.93 -0.40 0.78 16 33 H 0.09 1.56 5.26 -51.93 -0.27 1.29 16 34 H 0.06 1.16 5.50 -51.93 -0.29 0.87 16 35 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 36 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 37 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 41 H 0.07 1.13 6.47 -51.93 -0.34 0.80 16 42 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.35 7.16 -51.93 -0.37 -0.02 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -35.66 370.55 -6.14 -41.79 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.34 Total: -0.21 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 0.31 Total: 6.57 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.10 Total: -58.08 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.66 -6.14 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265969310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.378 kcal (2) G-P(sol) polarization free energy of solvation -35.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds