Wall clock time and date at job start Tue Mar 31 2020 04:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36594 * 126.58178 * 2 1 4 4 C 1.47520 * 125.77167 * 359.96145 * 3 2 1 5 5 O 1.21592 * 119.99800 * 354.26707 * 4 3 2 6 6 N 1.34779 * 120.00157 * 174.26422 * 4 3 2 7 7 C 1.46504 * 119.99791 * 184.30238 * 6 4 3 8 8 C 1.50697 * 109.47185 * 275.01479 * 7 6 4 9 9 H 1.08002 * 120.00200 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99906 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00037 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00138 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47247 * 89.99900 * 12 10 8 14 14 H 1.48494 * 109.47292 * 210.00269 * 12 10 8 15 15 H 1.48504 * 109.46881 * 330.00570 * 12 10 8 16 16 C 1.46501 * 120.00094 * 4.30928 * 6 4 3 17 17 C 1.53004 * 109.47275 * 83.61099 * 16 6 4 18 18 C 1.52992 * 109.46901 * 180.02562 * 17 16 6 19 19 N 1.46901 * 109.46929 * 179.97438 * 18 17 16 20 20 C 1.46909 * 110.99934 * 169.99661 * 19 18 17 21 21 C 1.46892 * 111.00267 * 293.95477 * 19 18 17 22 22 N 1.34405 * 108.46178 * 180.22294 * 3 2 1 23 23 N 1.28764 * 109.51894 * 359.59090 * 22 3 2 24 24 N 1.34814 * 126.57863 * 179.97438 * 2 1 3 25 25 C 1.46499 * 126.59787 * 0.04410 * 24 2 1 26 26 H 1.09006 * 109.47360 * 89.99414 * 1 2 3 27 27 H 1.08999 * 109.47526 * 209.99377 * 1 2 3 28 28 H 1.09005 * 109.47212 * 329.99940 * 1 2 3 29 29 H 1.08992 * 109.47002 * 35.01608 * 7 6 4 30 30 H 1.09001 * 109.46897 * 155.01686 * 7 6 4 31 31 H 0.97006 * 120.00235 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47144 * 203.61708 * 16 6 4 33 33 H 1.09004 * 109.46921 * 323.61592 * 16 6 4 34 34 H 1.08997 * 109.47082 * 300.00084 * 17 16 6 35 35 H 1.09004 * 109.46743 * 60.00385 * 17 16 6 36 36 H 1.09000 * 109.47735 * 299.99879 * 18 17 16 37 37 H 1.08999 * 109.47271 * 60.00072 * 18 17 16 38 38 H 1.09006 * 109.46713 * 60.00797 * 20 19 18 39 39 H 1.09000 * 109.46839 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47449 * 300.00503 * 20 19 18 41 41 H 1.09004 * 109.46915 * 60.00128 * 21 19 18 42 42 H 1.09001 * 109.47373 * 180.02562 * 21 19 18 43 43 H 1.09007 * 109.47115 * 299.99897 * 21 19 18 44 44 H 1.09002 * 109.46620 * 90.00330 * 25 24 2 45 45 H 1.08995 * 109.47709 * 210.00763 * 25 24 2 46 46 H 1.09000 * 109.47285 * 330.01323 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5026 -0.0008 5 8 0.6911 2.7643 -0.1067 6 7 2.7761 3.4970 0.1159 7 6 2.3254 4.8878 0.2100 8 6 2.1098 5.4407 -1.1752 9 1 2.2900 4.8183 -2.0392 10 6 1.6825 6.7413 -1.3394 11 7 1.4938 7.2237 -2.5482 12 14 1.3701 7.8177 0.1550 13 1 2.6183 8.5359 0.5173 14 1 0.3050 8.8035 -0.1589 15 1 0.9388 6.9690 1.2948 16 6 4.2076 3.1870 0.1486 17 6 4.7300 3.0381 -1.2818 18 6 6.2247 2.7138 -1.2475 19 7 6.7262 2.5702 -2.6208 20 6 8.1932 2.4945 -2.6404 21 6 6.1298 1.4005 -3.2795 22 7 3.5984 0.6789 -0.0050 23 7 3.6298 -0.6084 0.0006 24 7 2.3103 -1.0826 0.0005 25 6 1.8863 -2.4849 0.0002 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5137 28 1 -0.3634 0.8900 0.5139 29 1 1.3899 4.9296 0.7676 30 1 3.0818 5.4808 0.7243 31 1 1.1935 8.1388 -2.6638 32 1 4.7428 3.9941 0.6488 33 1 4.3652 2.2552 0.6918 34 1 4.1948 2.2310 -1.7818 35 1 4.5723 3.9699 -1.8249 36 1 6.7604 3.5206 -0.7473 37 1 6.3820 1.7819 -0.7045 38 1 8.5203 1.6336 -2.0572 39 1 8.5378 2.3890 -3.6691 40 1 8.6099 3.4049 -2.2095 41 1 5.0464 1.5157 -3.3133 42 1 6.5185 1.3175 -4.2944 43 1 6.3822 0.5001 -2.7194 44 1 1.7819 -2.8326 -1.0276 45 1 2.6326 -3.0903 0.5146 46 1 0.9288 -2.5751 0.5132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265969310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:36 Heat of formation + Delta-G solvation = 55.508445 kcal Electronic energy + Delta-G solvation = -26939.583424 eV Core-core repulsion = 23287.426322 eV Total energy + Delta-G solvation = -3652.157102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.28587 -40.44564 -38.65095 -36.98156 -35.78952 -34.74221 -33.28496 -32.67595 -30.46228 -28.73641 -28.48839 -28.31611 -27.05396 -25.18177 -23.82441 -23.36847 -21.91648 -21.72903 -20.45565 -19.00771 -18.40020 -17.38937 -17.35666 -16.84107 -16.49493 -16.25807 -16.11218 -15.72139 -15.39528 -15.14198 -14.94947 -14.82436 -14.35459 -14.21444 -14.08538 -13.96259 -13.61616 -13.49266 -13.30914 -13.19672 -13.12284 -12.89559 -12.80939 -12.58547 -12.47303 -12.42364 -12.14226 -12.00033 -11.75229 -11.63624 -11.46746 -11.01013 -10.79238 -10.74357 -10.15903 -9.37868 -9.23993 -8.25380 -6.29494 0.15057 0.69824 1.17908 1.36942 1.40706 1.51488 2.19356 2.36792 2.38011 3.05301 3.09300 3.24866 3.45526 3.66951 3.76939 4.00592 4.22666 4.26782 4.30475 4.35869 4.42605 4.51469 4.54723 4.60097 4.63912 4.66791 4.69295 4.72669 4.78414 4.80216 4.82709 4.92248 4.98817 4.99903 5.01972 5.13827 5.19688 5.49678 5.53363 5.56732 5.70007 6.11146 6.19306 6.31425 6.61220 6.71568 6.93743 7.25078 7.38888 8.92117 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.005886 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.824566 B = 4756.118148 C = 7068.870338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.127 3.873 3 C -0.126 4.126 4 C 0.585 3.415 5 O -0.569 6.569 6 N -0.586 5.586 7 C 0.227 3.773 8 C -0.523 4.523 9 H 0.023 0.977 10 C 0.010 3.990 11 N -0.949 5.949 12 Si 0.948 3.052 13 H -0.255 1.255 14 H -0.283 1.283 15 H -0.250 1.250 16 C 0.112 3.888 17 C -0.104 4.104 18 C 0.074 3.926 19 N -0.571 5.571 20 C 0.028 3.972 21 C 0.034 3.966 22 N -0.208 5.208 23 N -0.093 5.093 24 N -0.352 5.352 25 C 0.074 3.926 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.266 0.734 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.030 0.970 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -21.374 7.825 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.012 4.012 3 C -0.266 4.266 4 C 0.372 3.628 5 O -0.448 6.448 6 N -0.315 5.315 7 C 0.105 3.895 8 C -0.561 4.561 9 H 0.041 0.959 10 C -0.188 4.188 11 N -0.589 5.589 12 Si 0.771 3.229 13 H -0.180 1.180 14 H -0.208 1.208 15 H -0.173 1.173 16 C -0.011 4.011 17 C -0.144 4.144 18 C -0.054 4.054 19 N -0.296 5.296 20 C -0.120 4.120 21 C -0.114 4.114 22 N -0.080 5.080 23 N -0.072 5.072 24 N -0.138 5.138 25 C -0.065 4.065 26 H 0.114 0.886 27 H 0.137 0.863 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.123 0.877 45 H 0.133 0.867 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.451 -21.128 7.425 23.305 hybrid contribution -1.021 0.413 0.131 1.109 sum 5.430 -20.714 7.556 22.708 Atomic orbital electron populations 1.20748 0.82753 1.06018 1.05235 1.22175 0.97258 0.85883 0.95848 1.21192 0.90034 0.95018 1.20317 1.17197 0.85264 0.83559 0.76747 1.90701 1.17613 1.84099 1.52412 1.47794 1.07224 1.06642 1.69843 1.19446 0.95705 0.78609 0.95716 1.21445 1.44962 0.97494 0.92236 0.95862 1.25848 0.94389 0.99285 0.99246 1.70074 1.48318 1.16612 1.23915 0.85708 0.79037 0.78589 0.79595 1.17960 1.20814 1.17325 1.21927 0.78980 1.02900 0.97312 1.21642 0.95753 1.00012 0.96951 1.21902 0.94113 1.00731 0.88672 1.61900 1.08121 1.41220 1.18314 1.22397 0.85878 1.01249 1.02436 1.22273 0.99259 0.90632 0.99277 1.74651 1.18855 1.04059 1.10482 1.81819 0.97831 1.03534 1.24041 1.50518 1.05170 1.09040 1.49082 1.22698 1.04221 0.73144 1.06415 0.88574 0.86253 0.89607 0.95464 0.93153 0.92470 0.89822 0.87340 0.93955 0.94548 0.90069 0.93625 0.94870 0.90673 0.90896 0.93866 0.90548 0.95102 0.87706 0.86747 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.51 71.23 0.68 -1.16 16 2 C 0.13 3.43 7.02 41.71 0.29 3.72 16 3 C -0.13 -4.53 6.54 40.81 0.27 -4.26 16 4 C 0.59 26.25 7.57 86.69 0.66 26.90 16 5 O -0.57 -28.57 14.50 -4.01 -0.06 -28.63 16 6 N -0.59 -26.53 2.48 -829.93 -2.06 -28.60 16 7 C 0.23 11.53 4.19 85.63 0.36 11.89 16 8 C -0.52 -31.95 9.90 25.60 0.25 -31.70 16 9 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 10 C 0.01 0.58 5.47 84.66 0.46 1.04 16 11 N -0.95 -61.87 13.96 21.45 0.30 -61.57 16 12 Si 0.95 45.22 27.47 68.60 1.88 47.10 16 13 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 15 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 16 C 0.11 4.18 5.03 86.38 0.43 4.61 16 17 C -0.10 -4.04 4.96 30.59 0.15 -3.89 16 18 C 0.07 2.28 4.96 86.30 0.43 2.71 16 19 N -0.57 -17.35 5.02 -948.83 -4.76 -22.11 16 20 C 0.03 0.64 9.57 127.69 1.22 1.86 16 21 C 0.03 0.97 9.32 127.69 1.19 2.16 16 22 N -0.21 -6.93 7.59 -50.00 -0.38 -7.31 16 23 N -0.09 -2.64 13.78 37.02 0.51 -2.13 16 24 N -0.35 -7.57 4.03 -355.12 -1.43 -9.00 16 25 C 0.07 0.59 11.33 127.77 1.45 2.04 16 26 H 0.10 1.92 8.14 -2.38 -0.02 1.91 16 27 H 0.12 1.22 7.18 -2.39 -0.02 1.20 16 28 H 0.09 2.31 6.57 -2.38 -0.02 2.30 16 29 H 0.03 1.44 6.70 -2.39 -0.02 1.43 16 30 H 0.05 2.33 7.21 -2.39 -0.02 2.31 16 31 H 0.27 16.12 8.31 -92.70 -0.77 15.35 16 32 H 0.08 2.82 7.78 -2.39 -0.02 2.80 16 33 H 0.11 3.71 5.26 -2.38 -0.01 3.70 16 34 H 0.04 1.76 5.50 -2.39 -0.01 1.75 16 35 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 37 H 0.05 1.31 8.12 -2.39 -0.02 1.30 16 38 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 40 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 41 H 0.04 1.45 6.47 -2.38 -0.02 1.44 16 42 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.13 0.25 7.16 -2.39 -0.02 0.23 16 Total: -1.00 -84.03 370.55 2.76 -81.27 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.91 Total: 15.06 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 7.84 Total: 15.92 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -7.83 Total: -130.72 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.06 Total: -28.63 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.10 kcal Total: -84.03 2.76 -81.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265969310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.775 kcal (2) G-P(sol) polarization free energy of solvation -84.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds