Wall clock time and date at job start Tue Mar 31 2020 04:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.46762 * 124.35124 * 2 1 4 4 C 1.54475 * 105.53787 * 163.21141 * 3 2 1 5 5 C 1.54626 * 101.76483 * 25.21047 * 4 3 2 6 6 H 1.09001 * 110.48282 * 93.87660 * 5 4 3 7 7 C 1.50701 * 110.48772 * 216.52166 * 5 4 3 8 8 O 1.21274 * 119.99711 * 356.23048 * 7 5 4 9 9 N 1.34773 * 119.99669 * 176.22496 * 7 5 4 10 10 C 1.46504 * 119.99738 * 179.97438 * 9 7 5 11 11 C 1.53008 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.53041 * 109.46030 * 295.07378 * 11 10 9 13 13 C 1.53187 * 109.31036 * 178.61401 * 12 11 10 14 14 N 1.46929 * 108.77666 * 54.63333 * 13 12 11 15 15 C 1.36943 * 120.63005 * 126.36608 * 14 13 12 16 16 H 1.07994 * 119.99870 * 207.69244 * 15 14 13 17 17 C 1.38812 * 119.99759 * 27.69817 * 15 14 13 18 18 N 1.31616 * 120.00280 * 17.36150 * 17 15 14 19 19 Si 1.86800 * 119.99556 * 197.35986 * 17 15 14 20 20 H 1.48496 * 109.47448 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47209 * 119.99994 * 19 17 15 22 22 H 1.48501 * 109.47122 * 239.99736 * 19 17 15 23 23 C 1.46920 * 118.73995 * 306.39121 * 14 13 12 24 24 C 1.53032 * 109.45760 * 175.00152 * 11 10 9 25 25 C 1.34420 * 124.35239 * 179.82757 * 2 1 3 26 26 O 1.21281 * 124.94241 * 0.43280 * 25 2 1 27 27 H 1.08999 * 109.47475 * 180.19363 * 1 2 3 28 28 H 1.09001 * 109.47582 * 300.19839 * 1 2 3 29 29 H 1.09005 * 109.47548 * 60.19718 * 1 2 3 30 30 H 1.09001 * 110.38765 * 44.10150 * 3 2 1 31 31 H 1.09004 * 110.04457 * 282.14609 * 3 2 1 32 32 H 1.08999 * 110.97245 * 267.09429 * 4 3 2 33 33 H 1.09005 * 110.96950 * 143.33216 * 4 3 2 34 34 H 0.97001 * 120.00335 * 0.02562 * 9 7 5 35 35 H 1.09000 * 109.47555 * 300.00620 * 10 9 7 36 36 H 1.08997 * 109.46563 * 60.00834 * 10 9 7 37 37 H 1.09002 * 109.45823 * 55.03245 * 11 10 9 38 38 H 1.09003 * 109.49512 * 298.56422 * 12 11 10 39 39 H 1.08999 * 109.49670 * 58.66178 * 12 11 10 40 40 H 1.08998 * 109.59012 * 294.84846 * 13 12 11 41 41 H 1.09005 * 109.58658 * 174.42151 * 13 12 11 42 42 H 0.97000 * 120.00035 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.58536 * 293.82093 * 23 14 13 44 44 H 1.08996 * 109.70858 * 173.46306 * 23 14 13 45 45 H 1.09004 * 109.50292 * 301.33684 * 24 11 10 46 46 H 1.09006 * 109.49923 * 61.40846 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7029 0.7493 0.4299 5 6 3.6898 -0.7378 0.0063 6 1 4.1149 -0.8541 -0.9907 7 6 4.4449 -1.5772 1.0044 8 8 5.0126 -1.0474 1.9359 9 7 4.4892 -2.9166 0.8618 10 6 5.2237 -3.7326 1.8318 11 6 5.1172 -5.2082 1.4414 12 6 3.6592 -5.6606 1.5508 13 6 3.5510 -7.1284 1.1262 14 7 4.4913 -7.9233 1.9280 15 6 4.0593 -9.0185 2.6274 16 1 4.5787 -9.3268 3.5227 17 6 2.9539 -9.7325 2.1855 18 7 2.5292 -9.5885 0.9481 19 14 2.0693 -10.8976 3.3471 20 1 2.7398 -10.8795 4.6720 21 1 0.6569 -10.4658 3.5007 22 1 2.1084 -12.2744 2.7919 23 6 5.9037 -7.5204 1.9656 24 6 5.9856 -6.0480 2.3808 25 6 2.2234 -1.1097 0.0033 26 8 1.7946 -2.2442 -0.0008 27 1 -0.3634 -1.0276 0.0035 28 1 -0.3634 0.5169 0.8882 29 1 -0.3634 0.5108 -0.8918 30 1 1.9015 1.9392 0.7111 31 1 2.3260 1.6417 -1.0011 32 1 3.8337 0.8467 1.5076 33 1 4.4748 1.3010 -0.1067 34 1 4.0353 -3.3403 0.1165 35 1 6.2719 -3.4337 1.8384 36 1 4.7982 -3.5875 2.8247 37 1 5.4615 -5.3382 0.4154 38 1 3.3218 -5.5543 2.5818 39 1 3.0379 -5.0465 0.8990 40 1 3.8016 -7.2226 0.0696 41 1 2.5347 -7.4840 1.2960 42 1 1.7565 -10.0872 0.6394 43 1 6.3461 -7.6465 0.9774 44 1 6.4419 -8.1342 2.6878 45 1 7.0200 -5.7098 2.3197 46 1 5.6265 -5.9377 3.4041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613972753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:09 Heat of formation + Delta-G solvation = -53.926084 kcal Electronic energy + Delta-G solvation = -26259.521360 eV Core-core repulsion = 22570.326069 eV Total energy + Delta-G solvation = -3689.195291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15547 -39.17418 -37.73482 -36.70836 -34.87727 -33.23417 -32.73180 -30.62127 -29.76246 -28.54018 -27.14608 -26.49110 -24.05399 -22.62654 -22.09621 -21.00981 -20.75449 -19.75714 -18.98544 -17.66095 -17.17363 -16.71131 -16.42941 -15.81638 -15.41148 -14.87039 -14.76874 -14.18542 -14.06897 -14.00310 -13.65817 -13.44260 -13.29339 -13.14146 -12.96487 -12.77465 -12.52158 -12.34202 -12.27773 -12.06095 -11.75903 -11.45647 -11.29942 -10.94483 -10.67450 -10.47211 -10.23452 -10.14004 -10.12332 -9.93468 -9.82115 -9.46990 -9.35241 -9.09031 -8.91277 -8.40770 -6.60794 -5.72789 -3.14528 2.11238 2.47115 2.78409 3.23172 3.41203 3.48907 3.51298 3.89077 4.05956 4.50589 4.55104 4.56839 4.84325 4.91149 4.95644 5.10662 5.15119 5.20789 5.32894 5.42277 5.44637 5.45188 5.49640 5.65512 5.71647 5.93854 5.98378 6.10550 6.12011 6.24510 6.36889 6.50233 6.59763 6.68243 6.70118 6.77660 6.85506 6.91183 7.04729 7.45970 7.56077 7.74129 7.81513 7.85806 8.18665 8.51485 9.27771 9.91781 10.48419 11.35561 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.003181 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.432225 B = 8801.502335 C = 9891.638941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.623 5.623 3 C 0.101 3.899 4 C -0.115 4.115 5 C -0.151 4.151 6 H 0.135 0.865 7 C 0.528 3.472 8 O -0.542 6.542 9 N -0.709 5.709 10 C 0.124 3.876 11 C -0.090 4.090 12 C -0.136 4.136 13 C 0.172 3.828 14 N -0.593 5.593 15 C -0.250 4.250 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.147 3.853 24 C -0.124 4.124 25 C 0.524 3.476 26 O -0.509 6.509 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.016 0.984 41 H 0.087 0.913 42 H 0.252 0.748 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 23.945 -4.807 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.358 5.358 3 C -0.022 4.022 4 C -0.153 4.153 5 C -0.175 4.175 6 H 0.153 0.847 7 C 0.312 3.688 8 O -0.420 6.420 9 N -0.359 5.359 10 C 0.000 4.000 11 C -0.109 4.109 12 C -0.175 4.175 13 C 0.046 3.954 14 N -0.316 5.316 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.198 4.198 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.020 3.980 24 C -0.164 4.164 25 C 0.310 3.690 26 O -0.383 6.383 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.245 0.755 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.517 23.578 -4.206 23.955 hybrid contribution -0.824 -0.690 0.044 1.076 sum -0.307 22.887 -4.162 23.265 Atomic orbital electron populations 1.21602 0.77490 1.04208 1.01548 1.48060 1.06740 1.07180 1.73813 1.22171 0.90471 0.87433 1.02096 1.22588 0.96211 0.91858 1.04692 1.22184 0.94990 0.97874 1.02475 0.84714 1.19673 0.80756 0.82792 0.85548 1.90689 1.46331 1.72389 1.32614 1.46067 1.53330 1.06051 1.30486 1.21594 0.95625 0.90585 0.92146 1.21307 0.98221 0.91411 0.99980 1.22250 0.93688 1.00328 1.01229 1.20761 0.96500 0.85659 0.92473 1.44080 1.01623 1.29520 1.56376 1.19231 1.11810 1.03706 1.03251 0.91709 1.25028 1.01181 0.98085 0.95483 1.70047 1.26615 1.44043 1.13987 0.86248 0.79715 0.80397 0.80576 1.20285 1.21602 1.21799 1.20868 0.87547 0.91814 0.97762 1.21987 0.97420 0.97909 0.99083 1.20362 0.87970 0.84817 0.75887 1.90819 1.77858 1.20510 1.49102 0.89571 0.91914 0.91890 0.89912 0.90739 0.88086 0.88496 0.75521 0.91840 0.91665 0.91348 0.92714 0.92955 0.96572 0.89519 0.93764 0.96581 0.92800 0.93010 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.14 59.84 0.67 1.35 16 2 N -0.62 -5.62 3.33 -180.30 -0.60 -6.22 16 3 C 0.10 0.58 7.35 -3.13 -0.02 0.56 16 4 C -0.12 -0.83 6.45 -25.10 -0.16 -0.99 16 5 C -0.15 -1.49 3.33 -91.78 -0.31 -1.80 16 6 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.53 7.24 7.16 -10.99 -0.08 7.16 16 8 O -0.54 -8.87 15.52 5.56 0.09 -8.79 16 9 N -0.71 -10.08 4.97 -60.29 -0.30 -10.38 16 10 C 0.12 1.88 5.07 -4.04 -0.02 1.86 16 11 C -0.09 -1.53 2.19 -90.58 -0.20 -1.72 16 12 C -0.14 -2.71 5.25 -26.61 -0.14 -2.85 16 13 C 0.17 4.22 5.31 -3.71 -0.02 4.20 16 14 N -0.59 -15.23 2.99 -172.32 -0.52 -15.74 16 15 C -0.25 -7.04 9.59 -15.06 -0.14 -7.19 16 16 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 17 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 18 N -0.90 -26.80 11.19 55.49 0.62 -26.18 16 19 Si 0.90 22.22 29.59 -169.99 -5.03 17.19 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C 0.15 3.12 6.51 -3.71 -0.02 3.10 16 24 C -0.12 -2.18 5.36 -26.61 -0.14 -2.32 16 25 C 0.52 6.30 7.44 -10.86 -0.08 6.22 16 26 O -0.51 -8.10 16.17 5.56 0.09 -8.01 16 27 H 0.09 0.79 7.53 -51.93 -0.39 0.40 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.92 7.06 -51.93 -0.37 0.55 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.41 5.69 6.86 -40.82 -0.28 5.41 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 1.00 7.15 -51.93 -0.37 0.62 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -34.57 364.89 -8.51 -43.08 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.60 Total: 2.03 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.76 Total: 7.52 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.80 Total: -58.52 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.18 Total: -16.80 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.57 -8.51 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613972753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.850 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds