Wall clock time and date at job start Tue Mar 31 2020 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00404 * 2 1 4 4 H 1.07995 * 120.00603 * 204.32563 * 3 2 1 5 5 C 1.38815 * 119.99768 * 24.32072 * 3 2 1 6 6 N 1.31622 * 119.99735 * 8.74651 * 5 3 2 7 7 Si 1.86799 * 120.00229 * 188.74395 * 5 3 2 8 8 H 1.48504 * 109.46732 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47207 * 120.00066 * 7 5 3 10 10 H 1.48501 * 109.47293 * 240.00256 * 7 5 3 11 11 C 1.46506 * 119.99596 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63511 * 176.85809 * 11 2 1 13 13 C 1.55155 * 110.72296 * 53.51997 * 11 2 1 14 14 C 1.54909 * 101.57776 * 206.13180 * 13 11 2 15 15 N 1.47745 * 104.84308 * 37.09877 * 14 13 11 16 16 C 1.34773 * 125.82544 * 155.82646 * 15 14 13 17 17 O 1.21281 * 120.00444 * 179.90279 * 16 15 14 18 18 C 1.50702 * 119.99942 * 359.90913 * 16 15 14 19 19 H 1.09004 * 109.59924 * 271.69813 * 18 16 15 20 20 C 1.52989 * 109.60662 * 151.37037 * 18 16 15 21 21 C 1.51775 * 110.87758 * 326.70290 * 20 18 16 22 22 C 1.51791 * 113.81127 * 293.00316 * 21 20 18 23 23 C 1.53057 * 110.74752 * 66.81563 * 22 21 20 24 24 C 1.51425 * 108.49160 * 275.07935 * 23 22 21 25 25 O 1.21279 * 119.89014 * 251.19416 * 24 23 22 26 26 N 1.33365 * 120.21444 * 71.21988 * 24 23 22 27 27 C 1.47018 * 108.52577 * 335.74412 * 15 14 13 28 28 H 1.09004 * 109.47026 * 275.61215 * 1 2 3 29 29 H 1.08993 * 109.47149 * 35.61246 * 1 2 3 30 30 H 1.08997 * 109.47342 * 155.61360 * 1 2 3 31 31 H 0.97005 * 119.99713 * 180.02562 * 6 5 3 32 32 H 1.09001 * 111.00194 * 324.20598 * 13 11 2 33 33 H 1.08998 * 111.00652 * 88.06292 * 13 11 2 34 34 H 1.09003 * 110.36350 * 155.84488 * 14 13 11 35 35 H 1.08997 * 110.37232 * 278.16644 * 14 13 11 36 36 H 1.08998 * 109.19852 * 87.06442 * 20 18 16 37 37 H 1.09003 * 109.19454 * 206.34239 * 20 18 16 38 38 H 1.08997 * 108.61577 * 54.12444 * 21 20 18 39 39 H 1.09001 * 108.61781 * 172.02245 * 21 20 18 40 40 H 1.09000 * 109.22155 * 187.13664 * 22 21 20 41 41 H 1.08995 * 109.22228 * 306.53118 * 22 21 20 42 42 H 1.09007 * 109.63360 * 34.77945 * 23 22 21 43 43 H 1.08999 * 109.64051 * 155.37340 * 23 22 21 44 44 H 0.97006 * 119.78556 * 180.31773 * 26 24 23 45 45 H 1.09007 * 109.88321 * 241.68869 * 27 15 14 46 46 H 1.09000 * 109.88502 * 120.68219 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1578 1.2274 -0.3852 5 6 1.5481 2.3347 0.4951 6 7 0.3923 2.2553 1.1198 7 14 2.3788 3.9932 0.2750 8 1 3.6589 3.8125 -0.4559 9 1 1.4889 4.8934 -0.5015 10 1 2.6489 4.5923 1.6067 11 6 2.1974 -1.2688 -0.0006 12 1 3.2716 -1.0923 -0.0564 13 6 1.7247 -2.1751 -1.1678 14 6 2.0498 -3.5861 -0.6172 15 7 1.7474 -3.5078 0.8268 16 6 1.4357 -4.5480 1.6250 17 8 1.2073 -4.3625 2.8016 18 6 1.3709 -5.9418 1.0556 19 1 0.3677 -6.1353 0.6757 20 6 1.7116 -6.9586 2.1468 21 6 2.7329 -6.3907 3.1153 22 6 4.1005 -6.1601 2.4984 23 6 4.0405 -5.0503 1.4461 24 6 3.6062 -5.6596 0.1297 25 8 4.4034 -5.7692 -0.7778 26 7 2.3499 -6.0757 -0.0353 27 6 1.8455 -2.1030 1.2491 28 1 -0.3633 0.1005 1.0228 29 1 -0.3633 0.8354 -0.5984 30 1 -0.3634 -0.9359 -0.4243 31 1 -0.0283 3.0582 1.4654 32 1 0.6549 -2.0608 -1.3425 33 1 2.2915 -1.9700 -2.0760 34 1 1.4182 -4.3347 -1.0955 35 1 3.1026 -3.8210 -0.7734 36 1 0.8041 -7.2159 2.6930 37 1 2.1178 -7.8581 1.6842 38 1 2.3591 -5.4409 3.4979 39 1 2.8424 -7.0823 3.9507 40 1 4.8037 -5.8750 3.2809 41 1 4.4419 -7.0820 2.0277 42 1 3.3203 -4.2921 1.7541 43 1 5.0261 -4.5987 1.3333 44 1 2.0796 -6.4693 -0.8797 45 1 2.6288 -1.9953 1.9995 46 1 0.8915 -1.7717 1.6593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972300708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:09 Heat of formation + Delta-G solvation = -7.226077 kcal Electronic energy + Delta-G solvation = -28020.494887 eV Core-core repulsion = 24333.324661 eV Total energy + Delta-G solvation = -3687.170226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.79349 -39.00746 -38.00016 -36.08154 -35.04182 -34.09011 -31.79695 -31.13561 -29.88868 -28.20466 -27.00320 -26.07848 -24.77037 -23.47931 -22.41101 -21.48943 -20.20137 -19.27265 -18.95704 -17.85085 -17.46228 -17.05545 -16.18416 -16.01152 -15.35876 -15.02635 -14.87705 -14.33633 -14.25093 -13.84985 -13.68926 -13.36400 -13.34632 -12.92644 -12.76595 -12.58483 -12.39230 -12.18030 -11.99997 -11.69134 -11.52177 -11.18479 -10.94790 -10.93450 -10.85760 -10.72794 -10.59949 -10.47956 -10.29052 -9.96529 -9.87445 -9.86331 -9.72775 -9.14059 -8.62264 -8.35362 -6.84576 -5.79391 -3.29585 2.40922 2.50533 2.97127 3.10110 3.34372 3.41840 3.43609 4.25093 4.31784 4.42704 4.50030 4.64614 4.77750 4.93990 4.95770 5.09401 5.21898 5.24510 5.34093 5.48903 5.49637 5.54045 5.58867 5.71106 5.77964 5.82160 5.86900 5.94656 5.96146 5.99114 6.24254 6.29551 6.34019 6.51011 6.53846 6.56957 6.77280 6.81392 6.96080 7.31348 7.60280 7.69249 7.75245 8.05032 8.11577 8.32146 9.15532 9.76627 10.25736 11.24411 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.003905 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.655395 B = 7167.994225 C = 7383.808011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.007 3.993 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.098 3.902 15 N -0.610 5.610 16 C 0.519 3.481 17 O -0.526 6.526 18 C 0.125 3.875 19 H 0.123 0.877 20 C -0.112 4.112 21 C -0.166 4.166 22 C -0.107 4.107 23 C -0.171 4.171 24 C 0.531 3.469 25 O -0.548 6.548 26 N -0.722 5.722 27 C 0.083 3.917 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.000 1.000 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.404 0.596 45 H 0.062 0.938 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -18.816 -0.574 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.192 4.192 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.025 4.025 15 N -0.343 5.343 16 C 0.308 3.692 17 O -0.404 6.404 18 C 0.017 3.983 19 H 0.140 0.860 20 C -0.151 4.151 21 C -0.203 4.203 22 C -0.144 4.144 23 C -0.211 4.211 24 C 0.320 3.680 25 O -0.426 6.426 26 N -0.378 5.378 27 C -0.041 4.041 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.241 0.759 45 H 0.080 0.920 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.639 -18.539 -0.111 18.612 hybrid contribution 0.121 0.712 -0.384 0.818 sum 1.760 -17.827 -0.495 17.920 Atomic orbital electron populations 1.20826 0.82401 0.95432 0.99701 1.43902 1.01896 0.99844 1.84897 1.19276 0.99275 0.85542 1.35013 0.91143 1.25112 0.97496 0.98802 0.97819 1.70068 1.17468 1.27527 1.39881 0.86145 0.78823 0.83930 0.77402 1.20215 1.21579 1.21593 1.21355 0.96473 0.85961 0.89909 0.90325 1.23395 1.02786 0.93258 1.00096 1.22741 1.00422 0.99066 0.80283 1.48883 1.66923 1.08186 1.10338 1.20106 0.77109 0.85797 0.86222 1.90583 1.49972 1.84608 1.15262 1.21530 0.94465 0.93272 0.89030 0.85959 1.21521 1.00737 0.96856 0.96005 1.21844 0.94119 1.05779 0.98527 1.21169 0.98204 0.97510 0.97563 1.22595 1.05188 1.00438 0.92899 1.20450 0.81282 0.76433 0.89876 1.90767 1.51788 1.56591 1.43462 1.46072 1.10353 1.64186 1.17156 1.23032 1.02540 0.78252 1.00252 0.94898 0.93780 0.98113 0.93643 0.90331 0.90357 0.91117 0.91065 0.89857 0.90777 0.86619 0.91834 0.90711 0.92232 0.86995 0.88437 0.75886 0.92011 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.78 59.85 0.47 4.26 16 2 N -0.59 -13.89 2.93 -171.39 -0.50 -14.40 16 3 C -0.26 -6.91 9.61 -15.06 -0.14 -7.05 16 4 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 5 C 0.01 0.18 5.19 -17.43 -0.09 0.09 16 6 N -0.91 -25.73 10.56 55.49 0.59 -25.14 16 7 Si 0.91 21.36 29.56 -169.99 -5.03 16.33 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.17 3.33 3.45 -66.09 -0.23 3.10 16 12 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 13 C -0.16 -2.43 6.59 -24.58 -0.16 -2.59 16 14 C 0.10 1.30 4.91 -2.35 -0.01 1.29 16 15 N -0.61 -8.95 2.00 -170.26 -0.34 -9.29 16 16 C 0.52 7.10 4.13 -10.99 -0.05 7.05 16 17 O -0.53 -8.68 13.81 5.56 0.08 -8.61 16 18 C 0.13 1.19 3.47 -68.71 -0.24 0.95 16 19 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.11 -0.98 5.34 -27.36 -0.15 -1.13 16 21 C -0.17 -1.73 5.15 -27.97 -0.14 -1.87 16 22 C -0.11 -1.13 5.67 -27.32 -0.15 -1.28 16 23 C -0.17 -2.14 5.31 -27.50 -0.15 -2.29 16 24 C 0.53 6.77 3.76 -11.26 -0.04 6.72 16 25 O -0.55 -8.81 17.56 5.56 0.10 -8.72 16 26 N -0.72 -6.95 3.06 -54.57 -0.17 -7.12 16 27 C 0.08 1.52 6.37 -3.07 -0.02 1.50 16 28 H 0.03 0.86 7.25 -51.93 -0.38 0.48 16 29 H 0.04 1.13 7.35 -51.93 -0.38 0.74 16 30 H 0.00 0.01 6.04 -51.93 -0.31 -0.30 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.08 1.28 6.06 -51.93 -0.31 0.97 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.78 6.87 -51.93 -0.36 0.42 16 35 H 0.07 1.00 5.42 -51.93 -0.28 0.72 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.56 8.05 -51.93 -0.42 0.15 16 38 H 0.12 1.54 4.45 -53.34 -0.24 1.30 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.61 7.86 -51.93 -0.41 0.20 16 42 H 0.11 1.57 3.50 -51.92 -0.18 1.39 16 43 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 44 H 0.40 3.12 8.84 -40.82 -0.36 2.76 16 45 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 46 H 0.08 1.60 7.14 -51.93 -0.37 1.23 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -31.15 337.41 -8.22 -39.36 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.92 Total: 3.73 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.11 Total: 8.75 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.42 Total: -55.94 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.17 Total: -17.32 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.15 -8.22 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972300708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.138 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds