Wall clock time and date at job start Tue Mar 31 2020 04:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00404 * 2 1 4 4 H 1.07995 * 120.00603 * 204.32563 * 3 2 1 5 5 C 1.38815 * 119.99768 * 24.32072 * 3 2 1 6 6 N 1.31622 * 119.99735 * 8.74651 * 5 3 2 7 7 Si 1.86799 * 120.00229 * 188.74395 * 5 3 2 8 8 H 1.48504 * 109.46732 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47207 * 120.00066 * 7 5 3 10 10 H 1.48501 * 109.47293 * 240.00256 * 7 5 3 11 11 C 1.46506 * 119.99596 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63511 * 176.85809 * 11 2 1 13 13 C 1.55155 * 110.72296 * 53.51997 * 11 2 1 14 14 C 1.54909 * 101.57776 * 206.13180 * 13 11 2 15 15 N 1.47745 * 104.84308 * 37.09877 * 14 13 11 16 16 C 1.34773 * 125.82544 * 155.82646 * 15 14 13 17 17 O 1.21281 * 120.00444 * 179.90279 * 16 15 14 18 18 C 1.50702 * 119.99942 * 359.90913 * 16 15 14 19 19 H 1.09004 * 109.59924 * 271.69813 * 18 16 15 20 20 C 1.52989 * 109.60662 * 151.37037 * 18 16 15 21 21 C 1.51775 * 110.87758 * 326.70290 * 20 18 16 22 22 C 1.51791 * 113.81127 * 293.00316 * 21 20 18 23 23 C 1.53057 * 110.74752 * 66.81563 * 22 21 20 24 24 C 1.51425 * 108.49160 * 275.07935 * 23 22 21 25 25 O 1.21279 * 119.89014 * 251.19416 * 24 23 22 26 26 N 1.33365 * 120.21444 * 71.21988 * 24 23 22 27 27 C 1.47018 * 108.52577 * 335.74412 * 15 14 13 28 28 H 1.09004 * 109.47026 * 275.61215 * 1 2 3 29 29 H 1.08993 * 109.47149 * 35.61246 * 1 2 3 30 30 H 1.08997 * 109.47342 * 155.61360 * 1 2 3 31 31 H 0.97005 * 119.99713 * 180.02562 * 6 5 3 32 32 H 1.09001 * 111.00194 * 324.20598 * 13 11 2 33 33 H 1.08998 * 111.00652 * 88.06292 * 13 11 2 34 34 H 1.09003 * 110.36350 * 155.84488 * 14 13 11 35 35 H 1.08997 * 110.37232 * 278.16644 * 14 13 11 36 36 H 1.08998 * 109.19852 * 87.06442 * 20 18 16 37 37 H 1.09003 * 109.19454 * 206.34239 * 20 18 16 38 38 H 1.08997 * 108.61577 * 54.12444 * 21 20 18 39 39 H 1.09001 * 108.61781 * 172.02245 * 21 20 18 40 40 H 1.09000 * 109.22155 * 187.13664 * 22 21 20 41 41 H 1.08995 * 109.22228 * 306.53118 * 22 21 20 42 42 H 1.09007 * 109.63360 * 34.77945 * 23 22 21 43 43 H 1.08999 * 109.64051 * 155.37340 * 23 22 21 44 44 H 0.97006 * 119.78556 * 180.31773 * 26 24 23 45 45 H 1.09007 * 109.88321 * 241.68869 * 27 15 14 46 46 H 1.09000 * 109.88502 * 120.68219 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1578 1.2274 -0.3852 5 6 1.5481 2.3347 0.4951 6 7 0.3923 2.2553 1.1198 7 14 2.3788 3.9932 0.2750 8 1 3.6589 3.8125 -0.4559 9 1 1.4889 4.8934 -0.5015 10 1 2.6489 4.5923 1.6067 11 6 2.1974 -1.2688 -0.0006 12 1 3.2716 -1.0923 -0.0564 13 6 1.7247 -2.1751 -1.1678 14 6 2.0498 -3.5861 -0.6172 15 7 1.7474 -3.5078 0.8268 16 6 1.4357 -4.5480 1.6250 17 8 1.2073 -4.3625 2.8016 18 6 1.3709 -5.9418 1.0556 19 1 0.3677 -6.1353 0.6757 20 6 1.7116 -6.9586 2.1468 21 6 2.7329 -6.3907 3.1153 22 6 4.1005 -6.1601 2.4984 23 6 4.0405 -5.0503 1.4461 24 6 3.6062 -5.6596 0.1297 25 8 4.4034 -5.7692 -0.7778 26 7 2.3499 -6.0757 -0.0353 27 6 1.8455 -2.1030 1.2491 28 1 -0.3633 0.1005 1.0228 29 1 -0.3633 0.8354 -0.5984 30 1 -0.3634 -0.9359 -0.4243 31 1 -0.0283 3.0582 1.4654 32 1 0.6549 -2.0608 -1.3425 33 1 2.2915 -1.9700 -2.0760 34 1 1.4182 -4.3347 -1.0955 35 1 3.1026 -3.8210 -0.7734 36 1 0.8041 -7.2159 2.6930 37 1 2.1178 -7.8581 1.6842 38 1 2.3591 -5.4409 3.4979 39 1 2.8424 -7.0823 3.9507 40 1 4.8037 -5.8750 3.2809 41 1 4.4419 -7.0820 2.0277 42 1 3.3203 -4.2921 1.7541 43 1 5.0261 -4.5987 1.3333 44 1 2.0796 -6.4693 -0.8797 45 1 2.6288 -1.9953 1.9995 46 1 0.8915 -1.7717 1.6593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972300708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:08 Heat of formation + Delta-G solvation = -27.591047 kcal Electronic energy + Delta-G solvation = -28021.377979 eV Core-core repulsion = 24333.324661 eV Total energy + Delta-G solvation = -3688.053318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.81940 -40.15013 -39.33623 -37.11558 -36.67623 -35.06160 -33.47482 -32.10930 -31.36747 -29.61764 -28.13552 -27.96622 -25.80292 -24.88653 -23.84367 -22.51543 -21.13800 -20.85928 -20.02010 -19.02686 -18.72276 -18.47905 -17.46393 -17.23988 -16.76560 -16.31246 -15.91236 -15.80185 -15.20445 -15.11030 -14.97793 -14.75504 -14.61535 -14.38075 -13.88304 -13.85844 -13.63657 -13.43935 -13.27634 -13.11925 -12.79240 -12.64867 -12.50790 -12.41084 -12.24562 -12.09222 -12.06114 -11.81715 -11.78978 -11.59598 -11.46203 -10.91811 -10.74918 -10.66883 -10.12659 -9.59060 -8.81288 -7.84707 -5.36877 1.36105 1.45918 1.47663 1.50232 1.57750 1.84533 2.21798 2.49292 3.23152 3.30835 3.39992 3.52743 3.70928 3.77117 3.85633 3.92463 4.05919 4.12383 4.21197 4.26882 4.28817 4.40491 4.47648 4.60672 4.68391 4.75407 4.81803 4.84190 4.94398 4.98159 5.01851 5.10926 5.15503 5.18383 5.23338 5.26111 5.38637 5.60003 5.63738 5.71977 5.78093 6.02778 6.30569 6.45879 6.99432 7.12711 7.14379 7.82055 8.26420 9.17589 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.003905 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.655395 B = 7167.994225 C = 7383.808011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.601 5.601 3 C -0.267 4.267 4 H 0.074 0.926 5 C -0.048 4.048 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.294 1.294 11 C 0.166 3.834 12 H 0.074 0.926 13 C -0.143 4.143 14 C 0.109 3.891 15 N -0.611 5.611 16 C 0.515 3.485 17 O -0.556 6.556 18 C 0.135 3.865 19 H 0.164 0.836 20 C -0.111 4.111 21 C -0.166 4.166 22 C -0.103 4.103 23 C -0.174 4.174 24 C 0.535 3.465 25 O -0.582 6.582 26 N -0.705 5.705 27 C 0.100 3.900 28 H 0.000 1.000 29 H 0.017 0.983 30 H 0.033 0.967 31 H 0.248 0.752 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.419 0.581 45 H 0.046 0.954 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -21.508 -1.798 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.322 5.322 3 C -0.397 4.397 4 H 0.092 0.908 5 C -0.244 4.244 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.189 1.189 9 H -0.217 1.217 10 H -0.221 1.221 11 C 0.057 3.943 12 H 0.092 0.908 13 C -0.183 4.183 14 C -0.013 4.013 15 N -0.345 5.345 16 C 0.306 3.694 17 O -0.435 6.435 18 C 0.027 3.973 19 H 0.181 0.819 20 C -0.149 4.149 21 C -0.203 4.203 22 C -0.141 4.141 23 C -0.215 4.215 24 C 0.323 3.677 25 O -0.463 6.463 26 N -0.360 5.360 27 C -0.026 4.026 28 H 0.018 0.982 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.259 0.741 45 H 0.065 0.935 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.687 -21.297 -1.357 21.407 hybrid contribution 0.146 1.480 0.068 1.489 sum 1.833 -19.817 -1.289 19.943 Atomic orbital electron populations 1.20482 0.82655 0.95838 0.97408 1.44053 1.02014 1.00835 1.85293 1.19618 0.99390 0.86771 1.33924 0.90825 1.25847 0.98252 1.02041 0.98220 1.70241 1.18915 1.27848 1.41406 0.85169 0.78248 0.79901 0.76917 1.18902 1.21744 1.22098 1.21506 0.95907 0.84980 0.91928 0.90805 1.23261 1.02573 0.93519 0.98923 1.22756 1.00944 0.98392 0.79253 1.48865 1.67663 1.06838 1.11100 1.20958 0.75735 0.86955 0.85734 1.90600 1.50880 1.85261 1.16762 1.21695 0.96230 0.90080 0.89298 0.81885 1.21577 1.00960 0.96898 0.95473 1.21794 0.94227 1.04665 0.99580 1.21166 0.98716 0.97077 0.97126 1.22576 1.04273 1.00769 0.93833 1.20370 0.81904 0.76200 0.89183 1.90760 1.52993 1.58232 1.44343 1.45912 1.09209 1.63001 1.17902 1.22471 1.00164 0.80788 0.99173 0.98159 0.96456 0.94883 0.94257 0.90541 0.89231 0.87600 0.91403 0.88319 0.88636 0.89606 0.90459 0.90451 0.91274 0.88611 0.89315 0.74079 0.93527 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 7.78 127.77 0.99 9.75 16 2 N -0.60 -29.07 2.93 -696.15 -2.04 -31.11 16 3 C -0.27 -14.33 9.61 84.03 0.81 -13.53 16 4 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 5 C -0.05 -2.67 5.19 84.86 0.44 -2.23 16 6 N -0.94 -55.18 10.56 21.65 0.23 -54.95 16 7 Si 0.97 44.68 29.56 68.60 2.03 46.71 16 8 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 9 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 C 0.17 6.37 3.45 46.18 0.16 6.53 16 12 H 0.07 2.89 7.93 -2.39 -0.02 2.87 16 13 C -0.14 -4.22 6.59 31.99 0.21 -4.01 16 14 C 0.11 2.61 4.91 86.79 0.43 3.04 16 15 N -0.61 -17.20 2.00 -810.98 -1.62 -18.82 16 16 C 0.52 13.18 4.13 87.66 0.36 13.54 16 17 O -0.56 -18.09 13.81 -3.03 -0.04 -18.13 16 18 C 0.13 2.02 3.47 44.11 0.15 2.17 16 19 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 20 C -0.11 -1.49 5.34 30.19 0.16 -1.33 16 21 C -0.17 -3.09 5.15 29.79 0.15 -2.94 16 22 C -0.10 -2.01 5.67 30.22 0.17 -1.84 16 23 C -0.17 -4.19 5.31 30.10 0.16 -4.03 16 24 C 0.53 12.34 3.76 88.11 0.33 12.68 16 25 O -0.58 -17.58 17.56 -3.03 -0.05 -17.63 16 26 N -0.70 -10.79 3.06 -445.73 -1.37 -12.16 16 27 C 0.10 3.70 6.37 86.73 0.55 4.25 16 28 H 0.00 0.01 7.25 -2.39 -0.02 -0.01 16 29 H 0.02 0.89 7.35 -2.39 -0.02 0.87 16 30 H 0.03 1.35 6.04 -2.39 -0.01 1.33 16 31 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 32 H 0.08 2.32 6.06 -2.39 -0.01 2.30 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.11 1.85 6.87 -2.39 -0.02 1.84 16 35 H 0.07 1.75 5.42 -2.39 -0.01 1.74 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 0.97 8.05 -2.39 -0.02 0.95 16 38 H 0.09 2.22 4.45 -24.66 -0.11 2.11 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.23 7.86 -2.39 -0.02 1.21 16 42 H 0.10 2.65 3.50 -2.38 -0.01 2.64 16 43 H 0.09 2.25 8.13 -2.39 -0.02 2.23 16 44 H 0.42 4.42 8.84 -92.70 -0.82 3.60 16 45 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.04 1.94 7.14 -2.39 -0.02 1.92 16 Total: -1.00 -70.67 337.41 2.31 -68.37 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.09 Total: 15.67 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 5.08 Total: 22.07 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.80 Total: -117.05 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.09 Total: -35.76 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.67 2.31 -68.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972300708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.776 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds