Wall clock time and date at job start Tue Mar 31 2020 04:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36935 * 120.00300 * 2 1 4 4 H 1.07995 * 120.00273 * 159.08910 * 3 2 1 5 5 C 1.38813 * 119.99908 * 339.37321 * 3 2 1 6 6 N 1.31617 * 120.00099 * 344.52209 * 5 3 2 7 7 Si 1.86804 * 120.00054 * 164.52612 * 5 3 2 8 8 H 1.48501 * 109.47295 * 94.96032 * 7 5 3 9 9 H 1.48505 * 109.47084 * 214.95993 * 7 5 3 10 10 H 1.48501 * 109.47238 * 334.95807 * 7 5 3 11 11 C 1.46498 * 119.99911 * 180.02562 * 2 1 3 12 12 H 1.09009 * 109.49805 * 179.97438 * 11 2 1 13 13 C 1.53039 * 109.49699 * 299.99549 * 11 2 1 14 14 C 1.53037 * 109.54024 * 181.31676 * 13 11 2 15 15 C 1.53200 * 109.31508 * 298.63945 * 14 13 11 16 16 N 1.46928 * 108.77346 * 54.63117 * 15 14 13 17 17 C 1.34777 * 120.62853 * 126.41885 * 16 15 14 18 18 O 1.21277 * 119.99725 * 185.27842 * 17 16 15 19 19 C 1.50702 * 120.00068 * 5.27696 * 17 16 15 20 20 H 1.09001 * 109.67019 * 31.53231 * 19 17 16 21 21 C 1.53340 * 109.67462 * 152.02571 * 19 17 16 22 22 C 1.52918 * 108.67796 * 187.26872 * 21 19 17 23 23 N 1.45756 * 110.48213 * 309.24592 * 22 21 19 24 24 C 1.33351 * 124.11058 * 19.10348 * 23 22 21 25 25 O 1.21282 * 118.25083 * 177.77357 * 24 23 22 26 26 C 1.50204 * 123.51667 * 357.76093 * 24 23 22 27 27 C 1.46927 * 118.73755 * 306.39373 * 16 15 14 28 28 H 1.09007 * 109.47418 * 84.52536 * 1 2 3 29 29 H 1.08999 * 109.47588 * 204.52522 * 1 2 3 30 30 H 1.09001 * 109.47362 * 324.52464 * 1 2 3 31 31 H 0.97005 * 120.00215 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46106 * 301.33613 * 13 11 2 33 33 H 1.09001 * 109.45821 * 61.31365 * 13 11 2 34 34 H 1.09005 * 109.49662 * 58.58531 * 14 13 11 35 35 H 1.09001 * 109.50307 * 178.65129 * 14 13 11 36 36 H 1.09000 * 109.58658 * 174.42340 * 15 14 13 37 37 H 1.08999 * 109.57920 * 294.84604 * 15 14 13 38 38 H 1.09004 * 109.60618 * 307.02515 * 21 19 17 39 39 H 1.08998 * 109.60190 * 67.51028 * 21 19 17 40 40 H 1.08998 * 109.30352 * 69.55814 * 22 21 19 41 41 H 1.08999 * 109.30413 * 188.93882 * 22 21 19 42 42 H 0.96999 * 117.94887 * 199.06912 * 23 22 21 43 43 H 1.08994 * 109.39361 * 257.43868 * 26 24 23 44 44 H 1.09001 * 109.41866 * 137.68855 * 26 24 23 45 45 H 1.09007 * 109.58704 * 293.81880 * 27 16 15 46 46 H 1.09005 * 109.58225 * 173.39973 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1763 1.2166 0.3338 5 6 1.5224 2.3495 -0.4235 6 7 0.3970 2.2808 -1.1024 7 14 2.2756 4.0130 -0.0299 8 1 3.1059 4.4640 -1.1755 9 1 1.1940 5.0003 0.2165 10 1 3.1256 3.8972 1.1823 11 6 2.1974 -1.2687 -0.0006 12 1 3.2692 -1.0700 -0.0009 13 6 1.8282 -2.0722 1.2485 14 6 2.6175 -3.3832 1.2656 15 6 2.2496 -4.2124 0.0310 16 7 2.4653 -3.3937 -1.1698 17 6 3.2356 -3.8451 -2.1794 18 8 3.4843 -3.1235 -3.1218 19 6 3.7880 -5.2466 -2.1371 20 1 3.0927 -5.8993 -1.6093 21 6 3.9969 -5.7625 -3.5659 22 6 4.3825 -7.2409 -3.5013 23 7 5.4820 -7.4408 -2.5655 24 6 5.8219 -6.5703 -1.6142 25 8 6.7306 -6.8631 -0.8662 26 6 5.1400 -5.2462 -1.4195 27 6 1.8247 -2.0738 -1.2494 28 1 -0.3634 0.0980 -1.0230 29 1 -0.3634 -0.9349 0.4266 30 1 -0.3634 0.8369 0.5964 31 1 -0.0412 3.0939 -1.3987 32 1 2.0698 -1.4913 2.1386 33 1 0.7605 -2.2916 1.2367 34 1 3.6854 -3.1652 1.2522 35 1 2.3720 -3.9441 2.1674 36 1 2.8800 -5.1004 -0.0140 37 1 1.2020 -4.5080 0.0884 38 1 3.0735 -5.6500 -4.1341 39 1 4.7956 -5.1969 -4.0458 40 1 3.5213 -7.8240 -3.1752 41 1 4.6873 -7.5774 -4.4922 42 1 5.9984 -8.2585 -2.6388 43 1 5.7664 -4.4530 -1.8277 44 1 4.9848 -5.0715 -0.3549 45 1 0.7424 -2.1951 -1.2965 46 1 2.1749 -1.5508 -2.1394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027364584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:20 Heat of formation + Delta-G solvation = -50.955709 kcal Electronic energy + Delta-G solvation = -26858.275224 eV Core-core repulsion = 23169.208738 eV Total energy + Delta-G solvation = -3689.066485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.95304 -39.66046 -37.64791 -36.41735 -35.14491 -33.46931 -32.26427 -31.28159 -29.99259 -28.84746 -26.14688 -25.99937 -24.60610 -23.78169 -22.86823 -21.69744 -19.78247 -19.37655 -18.59312 -17.58543 -17.23804 -16.74173 -16.50943 -15.81206 -15.34150 -15.11832 -14.82106 -14.43956 -14.22256 -14.14107 -13.80336 -13.71448 -13.45143 -13.32790 -12.73049 -12.59856 -12.38996 -12.19168 -12.00801 -11.86376 -11.44984 -11.32763 -11.10837 -11.02238 -10.81212 -10.62480 -10.43611 -10.37007 -10.33027 -10.19189 -9.84719 -9.77517 -9.45135 -9.42318 -8.59634 -8.35190 -6.78618 -5.73093 -3.17102 2.36097 2.66490 2.98215 3.09364 3.39456 3.46134 3.48246 4.15057 4.31125 4.35121 4.48260 4.49574 4.74419 4.86996 4.95057 4.96454 5.10283 5.18211 5.25632 5.33067 5.42340 5.47615 5.50362 5.54811 5.63518 5.74075 5.84219 5.89046 5.96398 6.10537 6.21043 6.35037 6.43376 6.47347 6.63248 6.74472 6.90613 6.95776 6.98581 7.35748 7.60485 7.69865 7.81351 7.91302 8.30261 8.38760 9.22440 9.85812 10.33297 11.31747 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.003290 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.218285 B = 8508.616123 C = 8636.893428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.105 3.895 16 N -0.604 5.604 17 C 0.516 3.484 18 O -0.536 6.536 19 C -0.112 4.112 20 H 0.099 0.901 21 C -0.119 4.119 22 C 0.111 3.889 23 N -0.721 5.721 24 C 0.526 3.474 25 O -0.556 6.556 26 C -0.125 4.125 27 C 0.097 3.903 28 H 0.030 0.970 29 H 0.000 1.000 30 H 0.042 0.958 31 H 0.252 0.748 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.399 0.601 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.231 -21.136 -1.352 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.313 5.313 3 C -0.385 4.385 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.171 4.171 15 C -0.018 4.018 16 N -0.337 5.337 17 C 0.302 3.698 18 O -0.412 6.412 19 C -0.134 4.134 20 H 0.117 0.883 21 C -0.157 4.157 22 C -0.014 4.014 23 N -0.374 5.374 24 C 0.313 3.687 25 O -0.434 6.434 26 C -0.165 4.165 27 C -0.026 4.026 28 H 0.048 0.952 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.235 0.765 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.551 -20.483 -1.508 20.843 hybrid contribution 0.271 0.652 0.067 0.709 sum 3.821 -19.831 -1.441 20.247 Atomic orbital electron populations 1.20791 0.82584 0.95481 0.99507 1.43958 1.01848 1.00054 1.85451 1.19223 0.97249 0.84825 1.37250 0.91326 1.24966 0.97885 0.98384 0.98314 1.70086 1.19277 1.26863 1.38790 0.86258 0.78170 0.84071 0.78159 1.21475 1.21606 1.20487 1.20621 0.96511 0.86190 0.90742 0.91714 1.22092 0.99607 0.94943 1.00663 1.21914 1.01168 0.97305 0.96673 1.21800 1.01364 0.93621 0.85054 1.48327 1.48836 1.19194 1.17359 1.20290 0.78636 0.88333 0.82501 1.90726 1.58419 1.57861 1.34214 1.21473 0.97586 0.95810 0.98486 0.88280 1.21748 1.04348 0.94205 0.95445 1.21440 0.89518 0.97149 0.93256 1.45488 1.34918 1.23054 1.33892 1.20028 0.83218 0.85932 0.79514 1.90779 1.31199 1.77033 1.44395 1.21642 0.95506 0.95764 1.03626 1.22580 0.96622 0.80905 1.02522 0.95178 0.98131 0.93956 0.93753 0.91630 0.92256 0.91628 0.91135 0.90371 0.91392 0.89063 0.89613 0.91338 0.90009 0.76530 0.87223 0.87414 0.92018 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.91 59.84 0.47 4.31 16 2 N -0.59 -14.46 2.82 -173.35 -0.49 -14.95 16 3 C -0.26 -7.02 9.61 -15.06 -0.14 -7.16 16 4 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 5 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 6 N -0.91 -26.31 10.71 55.49 0.59 -25.71 16 7 Si 0.90 21.97 29.58 -169.99 -5.03 16.94 16 8 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.17 3.34 2.74 -67.81 -0.19 3.16 16 12 H 0.06 1.37 7.85 -51.92 -0.41 0.97 16 13 C -0.13 -2.11 5.13 -26.69 -0.14 -2.25 16 14 C -0.13 -1.55 6.08 -26.61 -0.16 -1.72 16 15 C 0.10 1.12 6.15 -3.71 -0.02 1.10 16 16 N -0.60 -8.67 2.97 -172.76 -0.51 -9.19 16 17 C 0.52 7.35 6.75 -10.98 -0.07 7.28 16 18 O -0.54 -9.95 15.73 5.56 0.09 -9.86 16 19 C -0.11 -1.07 1.72 -91.56 -0.16 -1.23 16 20 H 0.10 0.75 6.55 -51.93 -0.34 0.41 16 21 C -0.12 -0.97 4.77 -26.60 -0.13 -1.10 16 22 C 0.11 0.60 7.17 -4.48 -0.03 0.57 16 23 N -0.72 -5.43 5.45 -61.38 -0.33 -5.76 16 24 C 0.53 5.67 7.71 -11.86 -0.09 5.58 16 25 O -0.56 -8.23 17.78 5.56 0.10 -8.14 16 26 C -0.13 -1.27 5.23 -28.09 -0.15 -1.41 16 27 C 0.10 1.80 5.80 -3.71 -0.02 1.78 16 28 H 0.03 0.78 7.37 -51.92 -0.38 0.40 16 29 H 0.00 0.00 6.47 -51.93 -0.34 -0.33 16 30 H 0.04 1.09 7.27 -51.93 -0.38 0.71 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.93 6.72 -51.93 -0.35 0.59 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.64 4.92 -51.93 -0.26 0.38 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.40 2.53 8.80 -40.82 -0.36 2.17 16 43 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 44 H 0.11 1.04 7.39 -51.93 -0.38 0.65 16 45 H 0.06 1.15 7.51 -51.92 -0.39 0.76 16 46 H 0.09 2.04 7.00 -51.93 -0.36 1.67 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -34.12 355.32 -8.43 -42.56 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.29 Total: -0.14 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.92 Total: 8.90 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.74 Total: -55.61 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.19 Total: -18.00 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.12 -8.43 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027364584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.398 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds