Wall clock time and date at job start Tue Mar 31 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47016 * 111.00076 * 2 1 4 4 C 1.53099 * 109.26282 * 177.60712 * 3 2 1 5 5 O 1.43018 * 109.25721 * 56.84932 * 4 3 2 6 6 C 1.43015 * 113.73830 * 301.33175 * 5 4 3 7 7 C 1.47010 * 111.00350 * 236.36775 * 2 1 3 8 8 H 1.09004 * 109.54322 * 62.43268 * 7 2 1 9 9 C 1.50700 * 109.50656 * 302.32745 * 7 2 1 10 10 O 1.21282 * 119.99925 * 332.09591 * 9 7 2 11 11 N 1.34775 * 120.00486 * 152.09903 * 9 7 2 12 12 C 1.47445 * 125.57107 * 359.92784 * 11 9 7 13 13 C 1.54851 * 104.79169 * 204.61538 * 12 11 9 14 14 C 1.55123 * 101.81012 * 322.86035 * 13 12 11 15 15 H 1.09003 * 113.45701 * 159.22064 * 14 13 12 16 16 C 1.54036 * 108.26373 * 286.07562 * 14 13 12 17 17 N 1.46696 * 106.83229 * 135.80367 * 16 14 13 18 18 C 1.36938 * 125.32325 * 161.80065 * 17 16 14 19 19 H 1.07999 * 119.99772 * 353.66630 * 18 17 16 20 20 C 1.38813 * 120.00235 * 173.66733 * 18 17 16 21 21 N 1.31623 * 119.99718 * 352.93224 * 20 18 17 22 22 Si 1.86802 * 120.00056 * 172.92839 * 20 18 17 23 23 H 1.48501 * 109.46892 * 94.98954 * 22 20 18 24 24 H 1.48498 * 109.46915 * 214.98929 * 22 20 18 25 25 H 1.48500 * 109.47086 * 334.98978 * 22 20 18 26 26 C 1.46630 * 109.35818 * 341.82291 * 17 16 14 27 27 C 1.46731 * 125.59212 * 179.97438 * 11 9 7 28 28 H 1.09009 * 111.83443 * 55.78510 * 27 11 9 29 29 H 1.09006 * 109.46440 * 189.39219 * 1 2 3 30 30 H 1.09004 * 109.46972 * 309.38849 * 1 2 3 31 31 H 1.08999 * 109.47378 * 69.39267 * 1 2 3 32 32 H 1.09004 * 109.50584 * 57.67575 * 3 2 1 33 33 H 1.09003 * 109.54275 * 297.56525 * 3 2 1 34 34 H 1.09002 * 109.50578 * 296.91655 * 4 3 2 35 35 H 1.08999 * 109.50770 * 176.78298 * 4 3 2 36 36 H 1.09005 * 109.50811 * 298.73504 * 6 5 4 37 37 H 1.09003 * 109.51053 * 178.60274 * 6 5 4 38 38 H 1.09004 * 110.35055 * 85.80057 * 12 11 9 39 39 H 1.09005 * 110.40568 * 323.45934 * 12 11 9 40 40 H 1.08996 * 110.96361 * 204.72265 * 13 12 11 41 41 H 1.08996 * 110.96628 * 81.00278 * 13 12 11 42 42 H 1.09000 * 109.99085 * 255.15209 * 16 14 13 43 43 H 1.09011 * 109.98838 * 16.46242 * 16 14 13 44 44 H 0.96998 * 119.99311 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.75982 * 120.92316 * 26 17 16 46 46 H 1.09003 * 109.76179 * 241.62625 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 0.0603 5 8 4.0175 0.5575 -1.0403 6 6 3.5250 -0.7848 -1.0710 7 6 1.9959 -0.7601 -1.1427 8 1 1.6828 -0.2849 -2.0724 9 6 1.4671 -2.1705 -1.0957 10 8 1.1737 -2.6730 -0.0316 11 7 1.3202 -2.8736 -2.2361 12 6 1.6357 -2.3856 -3.5912 13 6 0.7473 -3.2342 -4.5339 14 6 0.7825 -4.6211 -3.8399 15 1 -0.0462 -5.2697 -4.1243 16 6 2.1662 -5.2504 -4.0886 17 7 2.6105 -5.8180 -2.8109 18 6 3.5968 -6.7563 -2.6616 19 1 4.0449 -7.2118 -3.5323 20 6 4.0205 -7.1218 -1.3913 21 7 3.5769 -6.4707 -0.3369 22 14 5.2202 -8.5377 -1.1783 23 1 6.6047 -8.0061 -1.1015 24 1 4.9019 -9.2722 0.0724 25 1 5.1078 -9.4603 -2.3365 26 6 1.8331 -5.2242 -1.7187 27 6 0.8192 -4.2493 -2.3327 28 1 -0.1630 -4.3564 -1.8722 29 1 -0.3632 -1.0140 0.1677 30 1 -0.3633 0.6522 0.7943 31 1 -0.3634 0.3617 -0.9619 32 1 1.6134 1.9092 0.8683 33 1 1.6827 1.8833 -0.9106 34 1 3.8385 0.8644 0.9965 35 1 3.9221 2.3400 0.0030 36 1 3.8386 -1.3083 -0.1677 37 1 3.9222 -1.2984 -1.9465 38 1 2.6900 -2.5469 -3.8163 39 1 1.3848 -1.3288 -3.6827 40 1 1.1788 -3.2872 -5.5334 41 1 -0.2689 -2.8418 -4.5701 42 1 2.0884 -6.0372 -4.8389 43 1 2.8688 -4.4862 -4.4211 44 1 3.8728 -6.7264 0.5507 45 1 1.3073 -6.0073 -1.1724 46 1 2.4983 -4.6866 -1.0428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075707421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:30 Heat of formation + Delta-G solvation = -21.497446 kcal Electronic energy + Delta-G solvation = -27874.677885 eV Core-core repulsion = 24186.888806 eV Total energy + Delta-G solvation = -3687.789079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61511 -39.38835 -37.58265 -35.53111 -34.78092 -32.36505 -31.32495 -30.86375 -29.10639 -28.49732 -26.42219 -24.81490 -24.61128 -24.23007 -22.59044 -21.24158 -20.37563 -19.51613 -18.49139 -17.29811 -16.69276 -16.49971 -16.32070 -15.74280 -15.35815 -14.95575 -14.75582 -14.39649 -14.06287 -13.82038 -13.78074 -13.60073 -13.16008 -12.94864 -12.58942 -12.44080 -12.30526 -12.00445 -11.87533 -11.69534 -11.52309 -11.30511 -11.13790 -10.90765 -10.74110 -10.73257 -10.49755 -10.25233 -10.14440 -9.89387 -9.84281 -9.64913 -9.22736 -8.57782 -8.44010 -8.15229 -6.76794 -5.63461 -3.01894 2.93500 3.13119 3.43116 3.48090 3.50904 3.69404 3.89564 4.51576 4.58570 4.73229 4.75641 4.84358 4.92389 4.95117 5.06637 5.15559 5.18084 5.38947 5.44010 5.45980 5.49827 5.51213 5.59354 5.65211 5.71283 5.74364 5.74921 5.86716 5.92071 5.97657 6.00929 6.20464 6.30944 6.46694 6.54934 6.64075 6.72828 6.83642 6.88542 7.01574 7.48145 7.72596 7.94258 7.95946 8.34076 8.60798 9.26037 9.87897 10.51347 11.44708 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.004807 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.962394 B = 5823.744445 C = 6667.450127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.020 3.980 4 C 0.059 3.941 5 O -0.380 6.380 6 C 0.077 3.923 7 C 0.039 3.961 8 H 0.065 0.935 9 C 0.534 3.466 10 O -0.507 6.507 11 N -0.602 5.602 12 C 0.098 3.902 13 C -0.123 4.123 14 C -0.110 4.110 15 H 0.098 0.902 16 C 0.142 3.858 17 N -0.601 5.601 18 C -0.236 4.236 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.912 5.912 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.170 3.830 27 C 0.117 3.883 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.022 0.978 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.018 0.982 44 H 0.253 0.747 45 H 0.035 0.965 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 16.298 -5.349 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.245 5.245 3 C -0.108 4.108 4 C -0.018 4.018 5 O -0.298 6.298 6 C 0.000 4.000 7 C -0.073 4.073 8 H 0.083 0.917 9 C 0.320 3.680 10 O -0.381 6.381 11 N -0.337 5.337 12 C -0.025 4.025 13 C -0.162 4.162 14 C -0.130 4.130 15 H 0.116 0.884 16 C 0.016 3.984 17 N -0.327 5.327 18 C -0.364 4.364 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.558 5.558 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.045 3.955 27 C 0.013 3.987 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.089 15.807 -4.193 17.450 hybrid contribution 0.109 -0.421 -0.424 0.607 sum -5.980 15.386 -4.617 17.141 Atomic orbital electron populations 1.22482 0.86327 1.03967 0.99805 1.61914 1.08725 1.12566 1.41254 1.22845 0.96718 0.89514 1.01729 1.22715 0.92080 0.96440 0.90555 1.87998 1.69640 1.23807 1.48378 1.22547 0.89421 0.83839 1.04229 1.22300 0.98006 0.93374 0.93595 0.91743 1.19577 0.79027 0.86406 0.83035 1.90744 1.48832 1.70176 1.28316 1.48415 1.64606 1.14988 1.05733 1.22374 1.00139 0.97662 0.82311 1.22744 0.99603 0.95297 0.98530 1.23142 0.99977 0.95866 0.94014 0.88412 1.21300 0.91176 0.95418 0.90551 1.44210 1.41134 1.47332 1.00051 1.18988 1.11635 1.13293 0.92477 0.90517 1.24844 0.99997 0.99734 0.95616 1.69994 1.47055 1.41104 0.97653 0.86154 0.80689 0.81974 0.77236 1.21664 1.21648 1.20665 1.21290 0.91249 0.92893 0.90068 1.22527 0.98418 0.81679 0.96037 0.90458 0.89849 0.91124 0.95946 0.89250 0.94045 0.91854 0.88326 0.90910 0.87646 0.90867 0.91452 0.89891 0.91147 0.94788 0.96423 0.93662 0.94703 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 60.06 0.55 0.83 16 2 N -0.52 -7.34 4.53 -235.96 -1.07 -8.41 16 3 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 4 C 0.06 0.65 7.01 37.21 0.26 0.92 16 5 O -0.38 -5.31 10.83 -35.23 -0.38 -5.69 16 6 C 0.08 1.18 6.27 37.21 0.23 1.41 16 7 C 0.04 0.59 1.93 -68.75 -0.13 0.46 16 8 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 9 C 0.53 9.87 5.65 -10.99 -0.06 9.81 16 10 O -0.51 -11.49 15.23 5.56 0.08 -11.41 16 11 N -0.60 -10.50 2.98 -162.39 -0.48 -10.98 16 12 C 0.10 1.33 6.21 -2.55 -0.02 1.32 16 13 C -0.12 -1.50 6.34 -24.63 -0.16 -1.65 16 14 C -0.11 -1.78 4.33 -87.75 -0.38 -2.16 16 15 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.14 2.81 6.45 -3.39 -0.02 2.79 16 17 N -0.60 -15.36 3.38 -172.04 -0.58 -15.94 16 18 C -0.24 -6.63 10.23 -15.06 -0.15 -6.78 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 20 C 0.00 -0.14 5.45 -17.43 -0.09 -0.23 16 21 N -0.91 -27.82 10.41 55.49 0.58 -27.25 16 22 Si 0.91 22.51 29.56 -169.99 -5.02 17.48 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.17 4.30 4.96 -3.73 -0.02 4.28 16 27 C 0.12 2.26 3.59 -66.35 -0.24 2.03 16 28 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 29 H 0.08 1.28 6.39 -51.93 -0.33 0.95 16 30 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 31 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 38 H 0.07 1.06 7.18 -51.93 -0.37 0.68 16 39 H 0.07 0.74 6.75 -51.93 -0.35 0.39 16 40 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.02 0.35 6.53 -51.92 -0.34 0.01 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.03 0.99 7.87 -51.93 -0.41 0.58 16 46 H 0.07 2.12 6.15 -51.93 -0.32 1.80 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -34.20 350.65 -9.34 -43.54 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.49 Total: 0.16 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -0.25 Total: 13.21 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -1.56 Total: -62.58 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.30 Total: -17.10 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.20 -9.34 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075707421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.043 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds