Wall clock time and date at job start Tue Mar 31 2020 04:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47016 * 111.00076 * 2 1 4 4 C 1.53099 * 109.26282 * 177.60712 * 3 2 1 5 5 O 1.43018 * 109.25721 * 56.84932 * 4 3 2 6 6 C 1.43015 * 113.73830 * 301.33175 * 5 4 3 7 7 C 1.47010 * 111.00350 * 236.36775 * 2 1 3 8 8 H 1.09004 * 109.54322 * 62.43268 * 7 2 1 9 9 C 1.50700 * 109.50656 * 302.32745 * 7 2 1 10 10 O 1.21282 * 119.99925 * 332.09591 * 9 7 2 11 11 N 1.34775 * 120.00486 * 152.09903 * 9 7 2 12 12 C 1.47445 * 125.57107 * 359.92784 * 11 9 7 13 13 C 1.54851 * 104.79169 * 204.61538 * 12 11 9 14 14 C 1.55123 * 101.81012 * 322.86035 * 13 12 11 15 15 H 1.09003 * 113.45701 * 159.22064 * 14 13 12 16 16 C 1.54036 * 108.26373 * 286.07562 * 14 13 12 17 17 N 1.46696 * 106.83229 * 135.80367 * 16 14 13 18 18 C 1.36938 * 125.32325 * 161.80065 * 17 16 14 19 19 H 1.07999 * 119.99772 * 353.66630 * 18 17 16 20 20 C 1.38813 * 120.00235 * 173.66733 * 18 17 16 21 21 N 1.31623 * 119.99718 * 352.93224 * 20 18 17 22 22 Si 1.86802 * 120.00056 * 172.92839 * 20 18 17 23 23 H 1.48501 * 109.46892 * 94.98954 * 22 20 18 24 24 H 1.48498 * 109.46915 * 214.98929 * 22 20 18 25 25 H 1.48500 * 109.47086 * 334.98978 * 22 20 18 26 26 C 1.46630 * 109.35818 * 341.82291 * 17 16 14 27 27 C 1.46731 * 125.59212 * 179.97438 * 11 9 7 28 28 H 1.09009 * 111.83443 * 55.78510 * 27 11 9 29 29 H 1.09006 * 109.46440 * 189.39219 * 1 2 3 30 30 H 1.09004 * 109.46972 * 309.38849 * 1 2 3 31 31 H 1.08999 * 109.47378 * 69.39267 * 1 2 3 32 32 H 1.09004 * 109.50584 * 57.67575 * 3 2 1 33 33 H 1.09003 * 109.54275 * 297.56525 * 3 2 1 34 34 H 1.09002 * 109.50578 * 296.91655 * 4 3 2 35 35 H 1.08999 * 109.50770 * 176.78298 * 4 3 2 36 36 H 1.09005 * 109.50811 * 298.73504 * 6 5 4 37 37 H 1.09003 * 109.51053 * 178.60274 * 6 5 4 38 38 H 1.09004 * 110.35055 * 85.80057 * 12 11 9 39 39 H 1.09005 * 110.40568 * 323.45934 * 12 11 9 40 40 H 1.08996 * 110.96361 * 204.72265 * 13 12 11 41 41 H 1.08996 * 110.96628 * 81.00278 * 13 12 11 42 42 H 1.09000 * 109.99085 * 255.15209 * 16 14 13 43 43 H 1.09011 * 109.98838 * 16.46242 * 16 14 13 44 44 H 0.96998 * 119.99311 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.75982 * 120.92316 * 26 17 16 46 46 H 1.09003 * 109.76179 * 241.62625 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 0.0603 5 8 4.0175 0.5575 -1.0403 6 6 3.5250 -0.7848 -1.0710 7 6 1.9959 -0.7601 -1.1427 8 1 1.6828 -0.2849 -2.0724 9 6 1.4671 -2.1705 -1.0957 10 8 1.1737 -2.6730 -0.0316 11 7 1.3202 -2.8736 -2.2361 12 6 1.6357 -2.3856 -3.5912 13 6 0.7473 -3.2342 -4.5339 14 6 0.7825 -4.6211 -3.8399 15 1 -0.0462 -5.2697 -4.1243 16 6 2.1662 -5.2504 -4.0886 17 7 2.6105 -5.8180 -2.8109 18 6 3.5968 -6.7563 -2.6616 19 1 4.0449 -7.2118 -3.5323 20 6 4.0205 -7.1218 -1.3913 21 7 3.5769 -6.4707 -0.3369 22 14 5.2202 -8.5377 -1.1783 23 1 6.6047 -8.0061 -1.1015 24 1 4.9019 -9.2722 0.0724 25 1 5.1078 -9.4603 -2.3365 26 6 1.8331 -5.2242 -1.7187 27 6 0.8192 -4.2493 -2.3327 28 1 -0.1630 -4.3564 -1.8722 29 1 -0.3632 -1.0140 0.1677 30 1 -0.3633 0.6522 0.7943 31 1 -0.3634 0.3617 -0.9619 32 1 1.6134 1.9092 0.8683 33 1 1.6827 1.8833 -0.9106 34 1 3.8385 0.8644 0.9965 35 1 3.9221 2.3400 0.0030 36 1 3.8386 -1.3083 -0.1677 37 1 3.9222 -1.2984 -1.9465 38 1 2.6900 -2.5469 -3.8163 39 1 1.3848 -1.3288 -3.6827 40 1 1.1788 -3.2872 -5.5334 41 1 -0.2689 -2.8418 -4.5701 42 1 2.0884 -6.0372 -4.8389 43 1 2.8688 -4.4862 -4.4211 44 1 3.8728 -6.7264 0.5507 45 1 1.3073 -6.0073 -1.1724 46 1 2.4983 -4.6866 -1.0428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075707421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:29 Heat of formation + Delta-G solvation = -47.971781 kcal Electronic energy + Delta-G solvation = -27875.825898 eV Core-core repulsion = 24186.888806 eV Total energy + Delta-G solvation = -3688.937093 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.94492 -40.63011 -39.01136 -36.66215 -36.50464 -34.07139 -32.70174 -32.30953 -30.57132 -29.75922 -27.99044 -26.62789 -25.88358 -25.28392 -23.82254 -22.75187 -21.80619 -20.86289 -19.90174 -18.96287 -18.37800 -17.63468 -17.49008 -17.00513 -16.80375 -16.38325 -16.04624 -15.73267 -15.63116 -15.39283 -14.93442 -14.82849 -14.66441 -14.28669 -14.03331 -13.92283 -13.44414 -13.41600 -13.22172 -12.97632 -12.86867 -12.79631 -12.72420 -12.46934 -12.31881 -12.12141 -11.89759 -11.84184 -11.77214 -11.60217 -11.39802 -11.04572 -10.76923 -10.58857 -9.62867 -9.43439 -8.88852 -7.83284 -5.24024 1.42039 1.44509 1.52104 1.54215 1.85175 2.47758 2.63286 2.83975 3.31985 3.34054 3.55929 3.62264 3.71392 3.77559 3.80443 3.89148 4.01779 4.14413 4.22546 4.24406 4.40834 4.43546 4.46082 4.51937 4.55563 4.58500 4.62047 4.72153 4.79438 4.84616 4.89040 4.93420 4.96402 5.11899 5.16696 5.28031 5.36656 5.43736 5.56731 5.71555 5.84828 5.91541 5.96928 6.19854 6.57390 7.06739 7.19493 7.78769 8.40586 9.23296 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.004807 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.962394 B = 5823.744445 C = 6667.450127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.051 3.949 5 O -0.384 6.384 6 C 0.084 3.916 7 C 0.054 3.946 8 H 0.093 0.907 9 C 0.526 3.474 10 O -0.563 6.563 11 N -0.603 5.603 12 C 0.089 3.911 13 C -0.104 4.104 14 C -0.097 4.097 15 H 0.119 0.881 16 C 0.134 3.866 17 N -0.622 5.622 18 C -0.242 4.242 19 H 0.088 0.912 20 C -0.070 4.070 21 N -0.950 5.950 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.299 1.299 25 H -0.262 1.262 26 C 0.187 3.813 27 C 0.120 3.880 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.135 0.865 36 H 0.036 0.964 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.045 0.955 43 H 0.030 0.970 44 H 0.242 0.758 45 H -0.017 1.017 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 18.716 -8.580 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.275 5.275 3 C -0.103 4.103 4 C -0.026 4.026 5 O -0.302 6.302 6 C 0.006 3.994 7 C -0.058 4.058 8 H 0.110 0.890 9 C 0.314 3.686 10 O -0.441 6.441 11 N -0.336 5.336 12 C -0.032 4.032 13 C -0.142 4.142 14 C -0.116 4.116 15 H 0.137 0.863 16 C 0.010 3.990 17 N -0.348 5.348 18 C -0.371 4.371 19 H 0.106 0.894 20 C -0.263 4.263 21 N -0.599 5.599 22 Si 0.806 3.194 23 H -0.214 1.214 24 H -0.226 1.226 25 H -0.186 1.186 26 C 0.061 3.939 27 C 0.015 3.985 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.153 0.847 36 H 0.054 0.946 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.001 0.999 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.772 18.258 -7.514 20.873 hybrid contribution 0.349 -1.150 0.595 1.341 sum -6.422 17.108 -6.920 19.540 Atomic orbital electron populations 1.22404 0.85540 1.02401 1.01648 1.61862 1.09705 1.14631 1.41273 1.22939 0.96003 0.87766 1.03642 1.23022 0.92854 0.97522 0.89157 1.87992 1.69944 1.22799 1.49474 1.22313 0.90009 0.84635 1.02412 1.22141 0.97154 0.91162 0.95331 0.88965 1.20353 0.77997 0.87780 0.82469 1.90711 1.51166 1.71685 1.30501 1.48512 1.63820 1.13938 1.07373 1.22707 1.00191 1.00153 0.80138 1.22786 1.01231 0.91345 0.98832 1.23143 0.98365 0.98578 0.91534 0.86269 1.21599 0.93388 0.95971 0.88085 1.44520 1.40665 1.47199 1.02420 1.19478 1.11540 1.13352 0.92746 0.89391 1.25752 1.02434 1.02597 0.95481 1.70297 1.48979 1.42955 0.97623 0.85078 0.78228 0.78973 0.77169 1.21367 1.22571 1.18592 1.20849 0.91164 0.92106 0.89769 1.22265 0.96177 0.81737 0.98280 0.90765 0.93374 0.89039 0.93970 0.87004 0.92239 0.93177 0.84722 0.94584 0.87745 0.91805 0.87741 0.86819 0.88195 0.93634 0.95233 0.94900 0.99937 0.96043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.12 127.69 1.17 1.83 16 2 N -0.55 -14.96 4.53 -900.45 -4.08 -19.04 16 3 C 0.02 0.44 5.65 86.31 0.49 0.93 16 4 C 0.05 1.02 7.01 72.02 0.50 1.53 16 5 O -0.38 -10.22 10.83 -148.98 -1.61 -11.83 16 6 C 0.08 2.62 6.27 72.02 0.45 3.07 16 7 C 0.05 1.58 1.93 44.18 0.09 1.67 16 8 H 0.09 2.16 6.58 -2.38 -0.02 2.14 16 9 C 0.53 20.05 5.65 87.66 0.49 20.55 16 10 O -0.56 -27.46 15.23 -3.04 -0.05 -27.51 16 11 N -0.60 -20.86 2.98 -786.06 -2.35 -23.20 16 12 C 0.09 2.13 6.21 86.83 0.54 2.67 16 13 C -0.10 -2.01 6.34 31.95 0.20 -1.80 16 14 C -0.10 -2.88 4.33 -8.93 -0.04 -2.92 16 15 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 16 C 0.13 5.10 6.45 86.69 0.56 5.66 16 17 N -0.62 -32.63 3.38 -698.21 -2.36 -34.98 16 18 C -0.24 -13.92 10.23 84.03 0.86 -13.06 16 19 H 0.09 4.73 7.84 -2.91 -0.02 4.71 16 20 C -0.07 -4.17 5.45 84.86 0.46 -3.71 16 21 N -0.95 -62.02 10.41 21.65 0.23 -61.80 16 22 Si 0.98 47.82 29.56 68.60 2.03 49.84 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 25 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 26 C 0.19 10.09 4.96 86.51 0.43 10.52 16 27 C 0.12 4.73 3.59 45.89 0.16 4.89 16 28 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 29 H 0.05 1.51 6.39 -2.38 -0.02 1.49 16 30 H 0.09 1.76 8.05 -2.38 -0.02 1.74 16 31 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.11 1.60 8.09 -2.38 -0.02 1.58 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.06 1.67 7.18 -2.38 -0.02 1.65 16 39 H 0.10 1.77 6.75 -2.38 -0.02 1.75 16 40 H 0.11 1.63 8.08 -2.39 -0.02 1.61 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.03 1.08 6.53 -2.38 -0.02 1.07 16 44 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 45 H -0.02 -1.09 7.87 -2.38 -0.02 -1.11 16 46 H 0.02 1.37 6.15 -2.39 -0.01 1.35 16 Total: -1.00 -83.27 350.65 -0.86 -84.13 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.96 Total: 12.55 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 6.37 Total: 31.84 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -8.56 Total: -139.03 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.66 Total: -39.34 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.84 kcal Total: -83.27 -0.86 -84.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075707421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.161 kcal (2) G-P(sol) polarization free energy of solvation -83.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds