Wall clock time and date at job start Tue Mar 31 2020 04:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45754 * 117.94664 * 2 1 4 4 C 1.52907 * 110.49369 * 160.94008 * 3 2 1 5 5 C 1.53341 * 108.68507 * 50.72668 * 4 3 2 6 6 H 1.08996 * 109.70663 * 52.22691 * 5 4 3 7 7 C 1.50698 * 109.67200 * 172.74767 * 5 4 3 8 8 O 1.21281 * 120.00164 * 358.96353 * 7 5 4 9 9 N 1.34777 * 119.99720 * 178.96262 * 7 5 4 10 10 C 1.46508 * 120.00013 * 180.02562 * 9 7 5 11 11 C 1.52991 * 109.47429 * 180.02562 * 10 9 7 12 12 H 1.08999 * 112.90686 * 316.25260 * 11 10 9 13 13 C 1.53781 * 113.61611 * 87.50116 * 11 10 9 14 14 C 1.54049 * 87.08031 * 139.97702 * 13 11 10 15 15 H 1.09000 * 113.61076 * 89.06984 * 14 13 11 16 16 N 1.46494 * 113.69866 * 220.05561 * 14 13 11 17 17 C 1.36939 * 119.99621 * 252.42359 * 16 14 13 18 18 H 1.07999 * 120.00346 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99701 * 180.02562 * 17 16 14 20 20 N 1.31611 * 120.00114 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47060 * 59.99584 * 21 19 17 23 23 H 1.48498 * 109.47184 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47150 * 300.00138 * 21 19 17 25 25 C 1.53781 * 113.61529 * 184.99923 * 11 10 9 26 26 C 1.53073 * 108.42387 * 292.47928 * 5 4 3 27 27 C 1.33355 * 117.94325 * 179.97438 * 2 1 3 28 28 O 1.21281 * 118.25051 * 2.19656 * 27 2 1 29 29 H 1.08998 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46857 * 300.02175 * 1 2 3 31 31 H 1.09003 * 109.47229 * 60.01749 * 1 2 3 32 32 H 1.08997 * 109.29815 * 281.23839 * 3 2 1 33 33 H 1.08995 * 109.30049 * 40.81941 * 3 2 1 34 34 H 1.08994 * 109.58382 * 290.96902 * 4 3 2 35 35 H 1.08998 * 109.60489 * 170.48895 * 4 3 2 36 36 H 0.96996 * 120.00851 * 359.97438 * 9 7 5 37 37 H 1.08997 * 109.46666 * 59.99730 * 10 9 7 38 38 H 1.09002 * 109.46731 * 300.00370 * 10 9 7 39 39 H 1.09005 * 113.61471 * 254.53285 * 13 11 10 40 40 H 1.08996 * 113.61178 * 25.34627 * 13 11 10 41 41 H 0.97000 * 120.00537 * 72.42383 * 16 14 13 42 42 H 0.97002 * 120.00116 * 180.02562 * 20 19 17 43 43 H 1.09002 * 113.61445 * 334.56787 * 25 11 10 44 44 H 1.09002 * 113.61408 * 105.38518 * 25 11 10 45 45 H 1.08997 * 109.39966 * 169.03289 * 26 5 4 46 46 H 1.09003 * 109.40225 * 288.77378 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1260 0.4677 5 6 4.2493 -0.0014 -0.3397 6 1 4.1092 0.1805 -1.4052 7 6 5.7217 -0.0625 -0.0247 8 8 6.2087 0.7299 0.7537 9 7 6.4973 -0.9977 -0.6079 10 6 7.9287 -1.0575 -0.3012 11 6 8.5721 -2.1996 -1.0900 12 1 7.9762 -3.1122 -1.0776 13 6 9.0414 -1.7896 -2.4959 14 6 10.2864 -2.6626 -2.2491 15 1 10.1583 -3.7015 -2.5529 16 7 11.5292 -2.0709 -2.7505 17 6 12.1332 -2.5888 -3.8650 18 1 11.6935 -3.4338 -4.3741 19 6 13.3111 -2.0285 -4.3398 20 7 13.8472 -0.9991 -3.7192 21 14 14.1354 -2.7355 -5.8598 22 1 13.2052 -2.6468 -7.0139 23 1 15.3687 -1.9640 -6.1582 24 1 14.4874 -4.1574 -5.6159 25 6 10.0539 -2.4268 -0.7473 26 6 3.5838 -1.3240 0.0490 27 6 2.0899 -1.1781 0.0005 28 8 1.4159 -2.1855 -0.0400 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5136 -0.8902 32 1 2.1398 1.6997 -1.0090 33 1 1.6293 1.9707 0.6724 34 1 3.6101 0.8731 1.5278 35 1 4.1384 2.0564 0.3035 36 1 6.1079 -1.6317 -1.2302 37 1 8.0646 -1.2310 0.7663 38 1 8.3994 -0.1144 -0.5788 39 1 8.3999 -2.1598 -3.2957 40 1 9.2634 -0.7266 -2.5893 41 1 11.9243 -1.3122 -2.2931 42 1 14.6701 -0.6074 -4.0512 43 1 10.5542 -1.5382 -0.3622 44 1 10.2297 -3.3107 -0.1342 45 1 3.8943 -2.1037 -0.6465 46 1 3.8880 -1.5994 1.0588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086124521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:48 Heat of formation + Delta-G solvation = -47.263347 kcal Electronic energy + Delta-G solvation = -25092.437631 eV Core-core repulsion = 21403.531259 eV Total energy + Delta-G solvation = -3688.906373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16222 -39.78763 -38.52264 -36.73608 -34.79629 -34.50539 -33.29105 -30.48562 -30.07957 -28.26087 -27.01967 -25.12148 -25.05977 -23.99642 -23.07599 -21.09428 -20.53260 -19.15470 -19.08723 -17.61620 -17.08310 -17.05174 -16.68115 -16.19568 -15.94158 -15.49724 -14.88470 -14.81436 -14.67901 -14.30016 -13.94734 -13.76097 -13.55480 -13.26217 -13.02817 -12.94123 -12.69997 -12.24505 -12.10551 -11.94058 -11.85004 -11.49643 -11.48248 -11.40845 -11.25605 -10.84166 -10.60934 -10.48274 -10.23277 -10.15352 -9.85538 -9.77054 -9.49577 -9.20022 -9.11038 -8.88192 -6.98424 -5.79973 -3.08967 2.20152 2.41261 2.55486 2.97757 3.41962 3.46502 3.47561 3.99790 4.10754 4.22416 4.26042 4.56659 4.71135 4.74988 4.78354 4.93252 4.95097 4.97251 5.05633 5.07458 5.18255 5.22348 5.28992 5.44398 5.46028 5.47677 5.48913 5.69271 5.78406 5.81055 5.89100 5.90047 6.06777 6.20496 6.28346 6.32813 6.40148 6.56327 6.79817 6.95956 7.08454 7.34466 7.66904 7.71133 8.04105 8.38568 9.49531 10.07721 10.41809 11.42259 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.002104 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.344717 B =13303.859761 C =13524.988975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.113 3.887 4 C -0.117 4.117 5 C -0.113 4.113 6 H 0.107 0.893 7 C 0.516 3.484 8 O -0.538 6.538 9 N -0.722 5.722 10 C 0.131 3.869 11 C -0.128 4.128 12 H 0.088 0.912 13 C -0.161 4.161 14 C 0.166 3.834 15 H 0.075 0.925 16 N -0.712 5.712 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.142 4.142 26 C -0.125 4.125 27 C 0.521 3.479 28 O -0.552 6.552 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.108 0.892 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.022 3.690 8.913 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.342 5.342 3 C -0.010 4.010 4 C -0.155 4.155 5 C -0.134 4.134 6 H 0.125 0.875 7 C 0.302 3.698 8 O -0.415 6.415 9 N -0.373 5.373 10 C 0.008 3.992 11 C -0.147 4.147 12 H 0.107 0.893 13 C -0.203 4.203 14 C 0.054 3.946 15 H 0.093 0.907 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.182 4.182 26 C -0.165 4.165 27 C 0.309 3.691 28 O -0.431 6.431 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.235 0.765 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.126 0.874 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.855 3.654 9.286 27.714 hybrid contribution 0.451 -0.236 -1.045 1.162 sum -25.404 3.418 8.241 26.925 Atomic orbital electron populations 1.21795 0.79428 1.04789 1.01422 1.47237 1.07680 1.06187 1.73067 1.21486 0.93002 0.84388 1.02130 1.21731 0.93503 0.99603 1.00619 1.21477 0.92480 0.96487 1.02984 0.87518 1.20328 0.88041 0.80787 0.80691 1.90726 1.75199 1.40332 1.35210 1.46093 1.09985 1.34345 1.46881 1.21470 0.78821 0.99389 0.99507 1.22640 0.96671 0.97335 0.98060 0.89335 1.24000 1.00488 1.01933 0.93835 1.21560 0.86478 0.95686 0.90908 0.90655 1.42400 1.23840 1.37164 1.31601 1.19258 1.04002 1.11403 1.02989 0.91145 1.24777 0.98237 0.98381 0.99534 1.69647 1.21647 1.25038 1.41668 0.86260 0.78800 0.78196 0.82868 1.21248 1.21681 1.21222 1.23450 0.93347 1.01624 0.99789 1.21657 0.91125 0.97972 1.05726 1.19984 0.90569 0.82868 0.75630 1.90725 1.66080 1.35770 1.50497 0.88973 0.92100 0.92062 0.91162 0.90004 0.90135 0.88352 0.76519 0.91673 0.91118 0.92793 0.90383 0.78061 0.93384 0.90122 0.92004 0.87397 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 10.48 59.85 0.63 1.04 16 2 N -0.61 -4.38 3.21 -182.86 -0.59 -4.97 16 3 C 0.11 0.55 6.40 -4.49 -0.03 0.52 16 4 C -0.12 -0.74 4.71 -26.60 -0.13 -0.87 16 5 C -0.11 -0.79 2.60 -91.56 -0.24 -1.03 16 6 H 0.11 0.61 8.13 -51.93 -0.42 0.19 16 7 C 0.52 5.38 7.14 -10.99 -0.08 5.30 16 8 O -0.54 -7.72 15.89 5.56 0.09 -7.64 16 9 N -0.72 -7.06 5.46 -60.29 -0.33 -7.39 16 10 C 0.13 1.58 5.51 -4.04 -0.02 1.56 16 11 C -0.13 -1.61 3.76 -89.81 -0.34 -1.94 16 12 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.16 -2.56 7.44 -25.78 -0.19 -2.75 16 14 C 0.17 3.13 4.49 -66.98 -0.30 2.83 16 15 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 16 N -0.71 -17.54 5.41 -52.50 -0.28 -17.82 16 17 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.14 -2.19 7.39 -25.92 -0.19 -2.38 16 26 C -0.12 -0.90 5.18 -28.10 -0.15 -1.05 16 27 C 0.52 4.88 7.47 -11.87 -0.09 4.80 16 28 O -0.55 -7.26 15.95 5.56 0.09 -7.17 16 29 H 0.09 0.73 6.59 -51.93 -0.34 0.39 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 34 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.10 0.66 7.89 -51.93 -0.41 0.25 16 36 H 0.40 2.99 8.16 -40.82 -0.33 2.66 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.37 7.89 -51.93 -0.41 0.96 16 41 H 0.39 10.12 7.92 -40.82 -0.32 9.79 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.11 0.67 7.92 -51.93 -0.41 0.26 16 46 H 0.11 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -34.48 373.87 -8.72 -43.20 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.67 Total: 7.56 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.37 Total: -1.32 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.48 Total: -57.42 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.18 Total: -14.81 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.48 -8.72 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086124521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.063 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds