Wall clock time and date at job start Tue Mar 31 2020 04:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45754 * 117.94664 * 2 1 4 4 C 1.52907 * 110.49369 * 160.94008 * 3 2 1 5 5 C 1.53341 * 108.68507 * 50.72668 * 4 3 2 6 6 H 1.08996 * 109.70663 * 52.22691 * 5 4 3 7 7 C 1.50698 * 109.67200 * 172.74767 * 5 4 3 8 8 O 1.21281 * 120.00164 * 358.96353 * 7 5 4 9 9 N 1.34777 * 119.99720 * 178.96262 * 7 5 4 10 10 C 1.46508 * 120.00013 * 180.02562 * 9 7 5 11 11 C 1.52991 * 109.47429 * 180.02562 * 10 9 7 12 12 H 1.08999 * 112.90686 * 316.25260 * 11 10 9 13 13 C 1.53781 * 113.61611 * 87.50116 * 11 10 9 14 14 C 1.54049 * 87.08031 * 139.97702 * 13 11 10 15 15 H 1.09000 * 113.61076 * 89.06984 * 14 13 11 16 16 N 1.46494 * 113.69866 * 220.05561 * 14 13 11 17 17 C 1.36939 * 119.99621 * 252.42359 * 16 14 13 18 18 H 1.07999 * 120.00346 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99701 * 180.02562 * 17 16 14 20 20 N 1.31611 * 120.00114 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47060 * 59.99584 * 21 19 17 23 23 H 1.48498 * 109.47184 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47150 * 300.00138 * 21 19 17 25 25 C 1.53781 * 113.61529 * 184.99923 * 11 10 9 26 26 C 1.53073 * 108.42387 * 292.47928 * 5 4 3 27 27 C 1.33355 * 117.94325 * 179.97438 * 2 1 3 28 28 O 1.21281 * 118.25051 * 2.19656 * 27 2 1 29 29 H 1.08998 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46857 * 300.02175 * 1 2 3 31 31 H 1.09003 * 109.47229 * 60.01749 * 1 2 3 32 32 H 1.08997 * 109.29815 * 281.23839 * 3 2 1 33 33 H 1.08995 * 109.30049 * 40.81941 * 3 2 1 34 34 H 1.08994 * 109.58382 * 290.96902 * 4 3 2 35 35 H 1.08998 * 109.60489 * 170.48895 * 4 3 2 36 36 H 0.96996 * 120.00851 * 359.97438 * 9 7 5 37 37 H 1.08997 * 109.46666 * 59.99730 * 10 9 7 38 38 H 1.09002 * 109.46731 * 300.00370 * 10 9 7 39 39 H 1.09005 * 113.61471 * 254.53285 * 13 11 10 40 40 H 1.08996 * 113.61178 * 25.34627 * 13 11 10 41 41 H 0.97000 * 120.00537 * 72.42383 * 16 14 13 42 42 H 0.97002 * 120.00116 * 180.02562 * 20 19 17 43 43 H 1.09002 * 113.61445 * 334.56787 * 25 11 10 44 44 H 1.09002 * 113.61408 * 105.38518 * 25 11 10 45 45 H 1.08997 * 109.39966 * 169.03289 * 26 5 4 46 46 H 1.09003 * 109.40225 * 288.77378 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1260 0.4677 5 6 4.2493 -0.0014 -0.3397 6 1 4.1092 0.1805 -1.4052 7 6 5.7217 -0.0625 -0.0247 8 8 6.2087 0.7299 0.7537 9 7 6.4973 -0.9977 -0.6079 10 6 7.9287 -1.0575 -0.3012 11 6 8.5721 -2.1996 -1.0900 12 1 7.9762 -3.1122 -1.0776 13 6 9.0414 -1.7896 -2.4959 14 6 10.2864 -2.6626 -2.2491 15 1 10.1583 -3.7015 -2.5529 16 7 11.5292 -2.0709 -2.7505 17 6 12.1332 -2.5888 -3.8650 18 1 11.6935 -3.4338 -4.3741 19 6 13.3111 -2.0285 -4.3398 20 7 13.8472 -0.9991 -3.7192 21 14 14.1354 -2.7355 -5.8598 22 1 13.2052 -2.6468 -7.0139 23 1 15.3687 -1.9640 -6.1582 24 1 14.4874 -4.1574 -5.6159 25 6 10.0539 -2.4268 -0.7473 26 6 3.5838 -1.3240 0.0490 27 6 2.0899 -1.1781 0.0005 28 8 1.4159 -2.1855 -0.0400 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5136 -0.8902 32 1 2.1398 1.6997 -1.0090 33 1 1.6293 1.9707 0.6724 34 1 3.6101 0.8731 1.5278 35 1 4.1384 2.0564 0.3035 36 1 6.1079 -1.6317 -1.2302 37 1 8.0646 -1.2310 0.7663 38 1 8.3994 -0.1144 -0.5788 39 1 8.3999 -2.1598 -3.2957 40 1 9.2634 -0.7266 -2.5893 41 1 11.9243 -1.3122 -2.2931 42 1 14.6701 -0.6074 -4.0512 43 1 10.5542 -1.5382 -0.3622 44 1 10.2297 -3.3107 -0.1342 45 1 3.8943 -2.1037 -0.6465 46 1 3.8880 -1.5994 1.0588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086124521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:47 Heat of formation + Delta-G solvation = -71.938613 kcal Electronic energy + Delta-G solvation = -25093.507631 eV Core-core repulsion = 21403.531259 eV Total energy + Delta-G solvation = -3689.976372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83826 -40.68965 -39.76619 -37.42683 -36.04263 -35.23836 -34.85798 -32.18855 -30.80420 -29.16493 -27.90387 -26.43343 -25.93437 -25.48106 -23.86495 -22.37356 -21.44253 -20.42097 -19.71803 -19.05235 -18.35323 -17.72951 -17.31822 -17.09393 -16.79359 -16.45549 -16.33325 -16.01929 -15.45911 -15.27703 -15.18463 -14.97224 -14.54856 -14.33238 -14.12297 -13.61941 -13.39091 -13.22541 -13.21276 -13.01410 -12.90226 -12.77660 -12.66592 -12.59771 -12.24614 -12.08726 -12.02407 -12.00160 -11.57988 -11.54710 -11.28112 -11.05490 -10.80291 -10.55222 -10.04885 -9.75206 -8.96485 -7.93773 -5.21960 1.47731 1.50574 1.51860 1.56669 1.60065 2.02426 2.16663 2.57422 3.36706 3.39387 3.56660 3.64060 3.71435 3.76649 3.77657 3.94066 4.17948 4.22901 4.27558 4.35788 4.37482 4.44773 4.48416 4.58148 4.61908 4.65332 4.72912 4.77746 4.84421 4.98675 4.99414 5.00095 5.00997 5.07995 5.19584 5.24665 5.38206 5.38879 5.45414 5.54511 5.75133 6.28507 6.37702 6.56294 7.06717 7.24498 7.33972 8.12877 8.34276 9.29437 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.002104 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.344717 B =13303.859761 C =13524.988975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.606 5.606 3 C 0.115 3.885 4 C -0.115 4.115 5 C -0.101 4.101 6 H 0.128 0.872 7 C 0.517 3.483 8 O -0.580 6.580 9 N -0.713 5.713 10 C 0.138 3.862 11 C -0.095 4.095 12 H 0.121 0.879 13 C -0.153 4.153 14 C 0.141 3.859 15 H 0.080 0.920 16 N -0.730 5.730 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.973 3.027 22 H -0.277 1.277 23 H -0.298 1.298 24 H -0.277 1.277 25 C -0.137 4.137 26 C -0.118 4.118 27 C 0.515 3.485 28 O -0.598 6.598 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.095 3.199 8.471 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.338 5.338 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.122 4.122 6 H 0.145 0.855 7 C 0.304 3.696 8 O -0.460 6.460 9 N -0.365 5.365 10 C 0.014 3.986 11 C -0.114 4.114 12 H 0.139 0.861 13 C -0.193 4.193 14 C 0.032 3.968 15 H 0.098 0.902 16 N -0.367 5.367 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.272 4.272 20 N -0.622 5.622 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.225 1.225 24 H -0.203 1.203 25 C -0.177 4.177 26 C -0.158 4.158 27 C 0.305 3.695 28 O -0.481 6.481 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.252 0.748 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.139 0.861 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -28.002 3.144 8.837 29.531 hybrid contribution 1.016 -0.068 -0.849 1.326 sum -26.986 3.075 7.988 28.311 Atomic orbital electron populations 1.21889 0.78776 1.03828 1.03226 1.47394 1.08361 1.06426 1.71604 1.21632 0.91852 0.83498 1.03710 1.21709 0.94481 0.99169 0.99971 1.21439 0.89753 0.96738 1.04267 0.85457 1.20868 0.89249 0.79855 0.79674 1.90715 1.76218 1.41942 1.37077 1.45975 1.08946 1.34589 1.46964 1.21212 0.80087 0.97997 0.99317 1.22463 0.95327 0.98530 0.95115 0.86094 1.23762 0.99057 0.99978 0.96529 1.22016 0.85325 0.96104 0.93365 0.90243 1.42622 1.25708 1.37145 1.31249 1.19694 1.03689 1.10803 1.03279 0.90347 1.25603 0.99471 0.99317 1.02852 1.69813 1.22041 1.26868 1.43512 0.85210 0.77414 0.77542 0.79595 1.20358 1.22451 1.20315 1.23331 0.95293 1.01725 0.97352 1.21613 0.89816 0.98319 1.06053 1.20295 0.91174 0.82885 0.75186 1.90709 1.67039 1.37347 1.52956 0.91293 0.90325 0.90202 0.89321 0.87982 0.91210 0.88552 0.74785 0.91643 0.93399 0.91392 0.92542 0.79648 0.94123 0.91500 0.90480 0.86137 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.48 127.77 1.34 2.00 16 2 N -0.61 -7.45 3.21 -851.63 -2.73 -10.18 16 3 C 0.11 0.78 6.40 86.49 0.55 1.34 16 4 C -0.12 -1.24 4.71 30.68 0.14 -1.09 16 5 C -0.10 -1.18 2.60 -11.40 -0.03 -1.21 16 6 H 0.13 1.03 8.13 -2.39 -0.02 1.01 16 7 C 0.52 9.89 7.14 87.66 0.63 10.51 16 8 O -0.58 -16.25 15.89 -3.03 -0.05 -16.30 16 9 N -0.71 -12.29 5.46 -463.06 -2.53 -14.82 16 10 C 0.14 3.11 5.51 86.37 0.48 3.59 16 11 C -0.10 -2.16 3.76 -10.27 -0.04 -2.20 16 12 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 13 C -0.15 -4.61 7.44 31.21 0.23 -4.38 16 14 C 0.14 5.21 4.49 45.61 0.20 5.41 16 15 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 16 N -0.73 -36.35 5.41 -320.01 -1.73 -38.08 16 17 C -0.24 -13.34 9.97 84.03 0.84 -12.50 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 20 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 21 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 C -0.14 -4.06 7.39 31.12 0.23 -3.83 16 26 C -0.12 -1.47 5.18 29.71 0.15 -1.32 16 27 C 0.52 8.95 7.47 87.71 0.66 9.60 16 28 O -0.60 -15.51 15.95 -3.03 -0.05 -15.56 16 29 H 0.07 1.07 6.59 -2.39 -0.02 1.05 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 0.35 8.10 -2.39 -0.02 0.33 16 34 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 35 H 0.10 1.12 7.89 -2.39 -0.02 1.10 16 36 H 0.42 4.79 8.16 -92.71 -0.76 4.03 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.33 7.84 -2.39 -0.02 1.31 16 39 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.06 1.97 7.89 -2.39 -0.02 1.95 16 41 H 0.37 20.15 7.92 -92.71 -0.73 19.42 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 45 H 0.12 1.19 7.92 -2.39 -0.02 1.17 16 46 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 Total: -1.00 -76.85 373.87 0.56 -76.29 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -0.51 Total: 28.42 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.85 Total: 1.78 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -6.71 Total: -122.58 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.10 Total: -31.86 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.85 0.56 -76.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086124521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.353 kcal (2) G-P(sol) polarization free energy of solvation -76.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds