Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99385 * 2 1 4 4 C 1.50693 * 109.47433 * 270.00345 * 3 2 1 5 5 H 1.08003 * 119.99795 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00072 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99866 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00086 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47342 * 90.00062 * 8 6 4 10 10 H 1.48497 * 109.47325 * 210.00798 * 8 6 4 11 11 H 1.48510 * 109.47024 * 330.00081 * 8 6 4 12 12 C 1.34776 * 120.00347 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99764 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99623 * 0.26712 * 12 2 1 15 15 C 1.53009 * 109.46975 * 179.72467 * 14 12 2 16 16 N 1.46894 * 109.47148 * 180.02562 * 15 14 12 17 17 C 1.46962 * 111.00109 * 293.80187 * 16 15 14 18 18 C 1.53055 * 109.36238 * 176.81084 * 17 16 15 19 19 N 1.46954 * 109.36180 * 58.40452 * 18 17 16 20 20 C 1.46903 * 110.99844 * 176.80813 * 19 18 17 21 21 C 1.53003 * 109.46790 * 55.99451 * 20 19 18 22 22 C 1.53005 * 117.49810 * 243.44959 * 21 20 19 23 23 C 1.53000 * 60.00353 * 252.51324 * 22 21 20 24 24 C 1.46961 * 110.88363 * 300.67305 * 19 18 17 25 25 C 1.46956 * 111.00175 * 170.00373 * 16 15 14 26 26 H 1.09006 * 109.46802 * 269.99571 * 1 2 3 27 27 H 1.08998 * 109.47747 * 29.99277 * 1 2 3 28 28 H 1.08997 * 109.46936 * 149.99910 * 1 2 3 29 29 H 1.08995 * 109.47310 * 30.00762 * 3 2 1 30 30 H 1.09005 * 109.46716 * 150.00309 * 3 2 1 31 31 H 0.96999 * 120.00293 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47504 * 299.72834 * 14 12 2 33 33 H 1.09010 * 109.47005 * 59.73103 * 14 12 2 34 34 H 1.08994 * 109.47304 * 300.00490 * 15 14 12 35 35 H 1.09003 * 109.46518 * 60.00815 * 15 14 12 36 36 H 1.08998 * 109.49055 * 296.77775 * 17 16 15 37 37 H 1.08998 * 109.48503 * 56.84831 * 17 16 15 38 38 H 1.08998 * 109.48925 * 298.43504 * 18 17 16 39 39 H 1.09005 * 109.50239 * 178.38279 * 18 17 16 40 40 H 1.08997 * 109.47365 * 175.99009 * 20 19 18 41 41 H 1.08996 * 109.47334 * 295.99474 * 20 19 18 42 42 H 1.08998 * 115.55773 * 29.16336 * 21 20 19 43 43 H 1.09001 * 117.49830 * 0.02562 * 22 21 20 44 44 H 1.09001 * 117.49428 * 145.01924 * 22 21 20 45 45 H 1.09000 * 117.49731 * 252.50943 * 23 22 21 46 46 H 1.08999 * 117.49591 * 107.48779 * 23 22 21 47 47 H 1.09005 * 109.48676 * 299.36052 * 24 19 18 48 48 H 1.08993 * 109.48726 * 179.29241 * 24 19 18 49 49 H 1.09002 * 109.48722 * 303.15968 * 25 16 15 50 50 H 1.09005 * 109.48621 * 63.19664 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7040 -1.4207 5 1 2.0980 1.0960 -2.2416 6 6 3.1266 2.8778 -1.6726 7 7 3.3453 3.2578 -2.9125 8 14 3.7335 3.9290 -0.2528 9 1 5.1066 3.5073 0.1238 10 1 3.7491 5.3557 -0.6645 11 1 2.8269 3.7597 0.9113 12 6 2.1390 -1.1672 -0.0005 13 8 3.3518 -1.1670 -0.0010 14 6 1.3855 -2.4722 -0.0072 15 6 2.3799 -3.6351 -0.0133 16 7 1.6454 -4.9073 -0.0205 17 6 0.9023 -5.0935 1.2337 18 6 0.0898 -6.3881 1.1547 19 7 0.9967 -7.5184 0.9106 20 6 0.2623 -8.7906 0.9034 21 6 -0.8603 -8.7256 -0.1341 22 6 -2.2995 -8.8299 0.3747 23 6 -1.6686 -10.0010 -0.3813 24 6 1.7399 -7.3323 -0.3436 25 6 2.5523 -6.0376 -0.2646 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1385 0.5138 31 1 3.8220 4.0837 -3.0898 32 1 0.7589 -2.5346 0.8825 33 1 0.7588 -2.5254 -0.8975 34 1 3.0064 -3.5727 -0.9030 35 1 3.0065 -3.5820 0.8770 36 1 1.6032 -5.1542 2.0662 37 1 0.2287 -4.2501 1.3858 38 1 -0.6299 -6.3166 0.3392 39 1 -0.4399 -6.5433 2.0947 40 1 0.9442 -9.6024 0.6505 41 1 -0.1649 -8.9691 1.8902 42 1 -0.6741 -8.0744 -0.9882 43 1 -2.4465 -8.9445 1.4486 44 1 -3.0603 -8.2470 -0.1445 45 1 -2.0145 -10.1886 -1.3978 46 1 -1.4006 -10.8863 0.1954 47 1 1.0388 -7.2715 -1.1761 48 1 2.4134 -8.1756 -0.4957 49 1 3.0817 -5.8826 -1.2047 50 1 3.2723 -6.1088 0.5507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048993513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = 7.199667 kcal Electronic energy + Delta-G solvation = -25905.928069 eV Core-core repulsion = 22355.216484 eV Total energy + Delta-G solvation = -3550.711585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.94832 -39.05541 -37.65665 -35.31570 -34.81529 -32.57458 -31.44359 -30.96895 -28.76451 -27.60723 -25.87625 -24.74079 -23.80544 -22.95341 -22.69625 -21.62051 -21.05887 -19.41075 -18.34557 -16.98041 -16.94010 -16.38649 -15.69150 -15.44114 -15.32651 -15.23076 -15.09453 -14.79187 -14.50302 -13.99635 -13.93378 -13.40317 -13.02359 -12.95055 -12.72005 -12.33719 -12.29272 -12.14645 -12.01979 -11.96061 -11.92453 -11.69390 -11.46016 -11.40502 -11.20085 -11.00181 -10.88776 -10.67905 -10.58112 -10.48159 -10.27394 -10.13168 -9.52921 -8.98496 -8.61465 -8.57696 -8.35814 -7.68084 -6.07391 -4.05959 3.30019 3.34800 3.35830 3.37587 3.37789 3.61329 3.70231 4.09121 4.28662 4.40743 4.51747 4.59310 4.72689 4.82942 4.88399 4.97912 5.09967 5.16192 5.23262 5.24802 5.27257 5.28656 5.34137 5.38606 5.39058 5.43239 5.50117 5.57138 5.63051 5.71951 5.72991 5.76628 5.82920 5.84359 5.88735 5.91347 6.10385 6.14100 6.20396 6.71136 6.72895 6.75635 6.95323 7.01610 7.03076 7.35849 7.62653 8.27286 8.48702 8.94548 9.01246 9.52953 11.06032 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.030879 B = 0.002318 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.536984 B =12077.898823 C =12313.987367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.544 6.544 14 C -0.133 4.133 15 C 0.073 3.927 16 N -0.541 5.541 17 C 0.051 3.949 18 C 0.059 3.941 19 N -0.536 5.536 20 C 0.086 3.914 21 C -0.191 4.191 22 C -0.177 4.177 23 C -0.177 4.177 24 C 0.056 3.944 25 C 0.057 3.943 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.045 0.955 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 -24.804 8.707 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.422 6.422 14 C -0.174 4.174 15 C -0.055 4.055 16 N -0.266 5.266 17 C -0.077 4.077 18 C -0.069 4.069 19 N -0.259 5.259 20 C -0.042 4.042 21 C -0.211 4.211 22 C -0.214 4.214 23 C -0.215 4.215 24 C -0.072 4.072 25 C -0.071 4.071 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.419 -24.616 8.611 28.083 hybrid contribution 0.145 0.737 0.445 0.873 sum -10.273 -23.879 9.056 27.528 Atomic orbital electron populations 1.21662 0.80940 1.03071 1.00361 1.47845 1.06295 1.07161 1.71813 1.19655 0.92448 0.80143 0.98339 1.21332 1.36884 1.07099 0.91288 0.90786 1.24872 0.95282 0.97386 0.95596 1.69898 1.41534 1.23560 1.18643 0.86835 0.80111 0.79714 0.82921 1.19923 1.21080 1.19098 1.20341 0.88050 0.85168 0.77086 1.90664 1.14032 1.87365 1.50162 1.21626 0.99291 0.92450 1.04000 1.21789 0.94496 0.86648 1.02525 1.62140 1.27963 1.02258 1.34269 1.22242 0.97424 0.97163 0.90885 1.22130 0.94090 0.89552 1.01093 1.62419 1.26893 1.02123 1.34431 1.21823 0.93009 0.92046 0.97302 1.23128 0.93650 1.01659 1.02617 1.23008 0.95698 1.02269 1.00398 1.22907 1.04452 0.92502 1.01612 1.22187 0.96939 0.97335 0.90726 1.22135 0.94019 0.89533 1.01428 0.93758 0.90638 0.91981 0.95303 0.94613 0.92583 0.89797 0.88567 0.89767 0.93903 0.94049 0.90046 0.93378 0.90629 0.90446 0.90588 0.87614 0.88790 0.88975 0.88971 0.88780 0.93657 0.90425 0.90073 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.25 59.85 0.61 1.90 16 2 N -0.60 -12.47 2.86 -182.95 -0.52 -12.99 16 3 C 0.21 5.34 4.23 -5.19 -0.02 5.32 16 4 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 5 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 8 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 12 C 0.51 10.34 7.67 -10.99 -0.08 10.26 16 13 O -0.54 -13.45 15.56 5.56 0.09 -13.36 16 14 C -0.13 -1.94 4.18 -27.88 -0.12 -2.06 16 15 C 0.07 1.04 4.25 -3.82 -0.02 1.03 16 16 N -0.54 -6.40 4.71 -234.46 -1.10 -7.51 16 17 C 0.05 0.53 5.41 -3.76 -0.02 0.51 16 18 C 0.06 0.53 5.20 -3.77 -0.02 0.51 16 19 N -0.54 -4.79 4.92 -234.46 -1.15 -5.94 16 20 C 0.09 0.62 5.67 -3.82 -0.02 0.60 16 21 C -0.19 -1.34 4.18 -90.61 -0.38 -1.72 16 22 C -0.18 -1.13 10.18 -26.73 -0.27 -1.40 16 23 C -0.18 -1.08 10.25 -26.73 -0.27 -1.35 16 24 C 0.06 0.51 5.36 -3.77 -0.02 0.49 16 25 C 0.06 0.61 5.61 -3.77 -0.02 0.59 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.08 1.02 6.46 -51.93 -0.34 0.69 16 33 H 0.10 1.33 7.40 -51.92 -0.38 0.95 16 34 H 0.08 1.33 7.98 -51.93 -0.41 0.91 16 35 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.79 6.34 -51.93 -0.33 0.46 16 38 H 0.05 0.46 6.93 -51.93 -0.36 0.10 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.52 8.07 -51.93 -0.42 0.11 16 41 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 42 H 0.11 0.88 6.27 -51.93 -0.33 0.56 16 43 H 0.09 0.55 8.03 -51.93 -0.42 0.13 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.43 6.54 -51.93 -0.34 0.09 16 48 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 49 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 50 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -33.82 386.04 -10.88 -44.70 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -9.02 Total: -1.65 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.09 Total: 0.96 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -2.01 Total: -53.61 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.82 -10.88 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048993513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.902 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds