Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.50699 * 109.47498 * 239.99818 * 2 1 3 5 5 O 1.21286 * 119.99914 * 257.52460 * 4 2 1 6 6 N 1.34779 * 119.99917 * 77.51892 * 4 2 1 7 7 C 1.46918 * 120.63258 * 354.79876 * 6 4 2 8 8 C 1.53629 * 108.54460 * 126.36676 * 7 6 4 9 9 C 1.53040 * 109.23492 * 54.85813 * 8 7 6 10 10 C 1.53040 * 109.53966 * 298.50940 * 9 8 7 11 11 C 1.46930 * 120.62686 * 175.08178 * 6 4 2 12 12 N 1.46904 * 109.47056 * 119.99680 * 2 1 3 13 13 C 1.46958 * 111.00027 * 285.66404 * 12 2 1 14 14 C 1.53052 * 109.36484 * 183.18532 * 13 12 2 15 15 N 1.46956 * 109.36417 * 301.60346 * 14 13 12 16 16 C 1.46904 * 110.99712 * 183.18673 * 15 14 13 17 17 C 1.50693 * 109.46877 * 169.99580 * 16 15 14 18 18 H 1.07999 * 120.00613 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99822 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00465 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47386 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47291 * 119.99948 * 21 19 17 24 24 H 1.48501 * 109.47229 * 239.99937 * 21 19 17 25 25 C 1.46958 * 110.88417 * 59.31792 * 15 14 13 26 26 C 1.46960 * 110.99643 * 49.46277 * 12 2 1 27 27 H 1.09004 * 109.47013 * 174.37694 * 1 2 3 28 28 H 1.08994 * 109.47109 * 294.37402 * 1 2 3 29 29 H 1.08996 * 109.46706 * 54.38132 * 1 2 3 30 30 H 1.09003 * 109.59010 * 246.20647 * 7 6 4 31 31 H 1.09005 * 109.58530 * 6.62990 * 7 6 4 32 32 H 1.09002 * 109.63144 * 294.86995 * 8 7 6 33 33 H 1.09000 * 109.43067 * 174.72519 * 8 7 6 34 34 H 1.09004 * 109.45196 * 178.49349 * 9 8 7 35 35 H 1.09001 * 109.46252 * 58.53592 * 9 8 7 36 36 H 1.08999 * 109.49422 * 301.41703 * 10 9 8 37 37 H 1.08995 * 109.49643 * 181.32265 * 10 9 8 38 38 H 1.09000 * 109.58635 * 353.37094 * 11 6 4 39 39 H 1.09002 * 109.58355 * 113.80144 * 11 6 4 40 40 H 1.09006 * 109.48953 * 63.22138 * 13 12 2 41 41 H 1.08997 * 109.48855 * 303.15563 * 13 12 2 42 42 H 1.08997 * 109.48550 * 181.62898 * 14 13 12 43 43 H 1.08998 * 109.50148 * 61.57806 * 14 13 12 44 44 H 1.08996 * 109.46933 * 289.99945 * 16 15 14 45 45 H 1.09000 * 109.46769 * 50.00230 * 16 15 14 46 46 H 0.96994 * 120.00807 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.48360 * 60.64546 * 25 15 14 48 48 H 1.08997 * 109.48855 * 180.71137 * 25 15 14 49 49 H 1.09000 * 109.48951 * 296.77667 * 26 12 2 50 50 H 1.09000 * 109.49167 * 56.82727 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4485 -1.8466 -1.1472 6 7 2.0193 -0.0832 -2.4233 7 6 1.4147 1.2486 -2.5622 8 6 2.4480 2.1902 -3.1994 9 6 2.9393 1.5830 -4.5155 10 6 3.6187 0.2401 -4.2375 11 6 2.6038 -0.7211 -3.6108 12 7 2.0197 -0.6924 1.1995 13 6 1.8460 0.1416 2.3969 14 6 2.4390 -0.5807 3.6090 15 7 1.7739 -1.8806 3.7750 16 6 2.2635 -2.5730 4.9745 17 6 1.3968 -3.7746 5.2498 18 1 0.5656 -4.0015 4.5987 19 6 1.6649 -4.5843 6.3330 20 7 2.6767 -4.3079 7.1263 21 14 0.5909 -6.0743 6.6739 22 1 -0.4732 -6.1640 5.6420 23 1 1.4232 -7.3037 6.6357 24 1 -0.0314 -5.9394 8.0155 25 6 1.9476 -2.7147 2.5776 26 6 1.3545 -1.9923 1.3656 27 1 -0.3633 -1.0228 -0.1007 28 1 -0.3633 0.4241 0.9360 29 1 -0.3632 0.5985 -0.8354 30 1 0.5325 1.1849 -3.1991 31 1 1.1319 1.6258 -1.5793 32 1 3.2916 2.3207 -2.5216 33 1 1.9849 3.1573 -3.3953 34 1 3.6528 2.2609 -4.9840 35 1 2.0917 1.4297 -5.1835 36 1 4.4513 0.3892 -3.5500 37 1 3.9891 -0.1806 -5.1723 38 1 3.1057 -1.6439 -3.3202 39 1 1.8165 -0.9421 -4.3316 40 1 0.7839 0.3210 2.5643 41 1 2.3578 1.0934 2.2545 42 1 2.2855 0.0233 4.5032 43 1 3.5067 -0.7357 3.4537 44 1 3.2919 -2.8961 4.8131 45 1 2.2252 -1.8945 5.8267 46 1 2.8651 -4.8773 7.8886 47 1 3.0096 -2.8939 2.4103 48 1 1.4358 -3.6664 2.7200 49 1 0.2869 -1.8372 1.5212 50 1 1.5077 -2.5962 0.4712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161557021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = -20.316097 kcal Electronic energy + Delta-G solvation = -27023.733475 eV Core-core repulsion = 23471.828717 eV Total energy + Delta-G solvation = -3551.904758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66857 -38.75441 -37.32457 -35.38012 -33.32428 -32.54576 -31.57618 -30.46260 -30.14381 -27.35693 -26.17054 -25.01923 -23.85620 -23.10899 -22.89025 -21.37515 -20.74323 -19.18843 -18.72938 -17.33259 -16.31601 -16.22936 -15.67584 -15.26542 -14.98379 -14.63034 -14.56608 -14.38982 -14.26129 -14.01542 -13.98098 -13.50373 -13.39064 -13.27466 -12.84999 -12.71182 -12.38740 -12.12662 -11.93420 -11.69597 -11.63771 -11.54291 -11.31800 -11.11508 -11.01661 -10.92535 -10.76428 -10.64309 -10.50128 -10.39304 -10.16991 -9.80072 -9.32493 -9.09886 -8.82552 -8.38107 -8.01365 -7.13237 -5.96879 -3.97719 2.59888 2.75136 3.35104 3.42103 3.47461 4.08025 4.30386 4.37218 4.47848 4.48109 4.59052 4.73491 4.86049 4.91652 4.92754 5.06734 5.10934 5.14717 5.36511 5.38724 5.39840 5.41686 5.46505 5.48932 5.50293 5.58536 5.66758 5.69095 5.73458 5.77561 5.93936 5.94664 5.97796 6.10823 6.23753 6.29884 6.39160 6.52051 6.73230 6.87007 7.11180 7.26373 7.36679 7.43822 7.47954 7.87306 8.16396 8.18914 8.29565 8.63492 9.10323 9.66245 11.14182 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.002793 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.601279 B =10022.238527 C =10310.429139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.066 3.934 3 H 0.099 0.901 4 C 0.526 3.474 5 O -0.517 6.517 6 N -0.618 5.618 7 C 0.105 3.895 8 C -0.137 4.137 9 C -0.119 4.119 10 C -0.135 4.135 11 C 0.112 3.888 12 N -0.518 5.518 13 C 0.060 3.940 14 C 0.058 3.942 15 N -0.539 5.539 16 C 0.193 3.807 17 C -0.504 4.504 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.070 3.930 26 C 0.050 3.950 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.030 0.970 44 H -0.009 1.009 45 H 0.029 0.971 46 H 0.260 0.740 47 H 0.028 0.972 48 H 0.084 0.916 49 H 0.037 0.963 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 15.756 -23.695 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.047 4.047 3 H 0.116 0.884 4 C 0.314 3.686 5 O -0.391 6.391 6 N -0.354 5.354 7 C -0.019 4.019 8 C -0.175 4.175 9 C -0.157 4.157 10 C -0.173 4.173 11 C -0.010 4.010 12 N -0.243 5.243 13 C -0.067 4.067 14 C -0.072 4.072 15 N -0.265 5.265 16 C 0.068 3.932 17 C -0.543 4.543 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.058 4.058 26 C -0.077 4.077 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.009 0.991 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.103 0.897 49 H 0.055 0.945 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.850 15.041 -23.453 27.923 hybrid contribution -0.445 -0.630 0.275 0.819 sum -2.295 14.411 -23.177 27.388 Atomic orbital electron populations 1.22441 0.95153 1.03516 1.03050 1.21592 0.94353 0.98302 0.90429 0.88367 1.20609 0.77741 0.86556 0.83740 1.90659 1.45706 1.17837 1.84861 1.48103 1.59793 1.18679 1.08784 1.21915 0.95575 0.82354 1.02008 1.22019 0.99519 0.98454 0.97550 1.21508 1.00429 0.96676 0.97087 1.21919 0.98543 0.95772 1.01104 1.21541 0.96127 0.96912 0.86442 1.62123 1.57169 1.04089 1.00902 1.22217 0.99484 0.95407 0.89630 1.22034 0.96204 0.92974 0.95941 1.62310 1.57012 1.02891 1.04243 1.19695 0.93911 0.93452 0.86133 1.21201 1.13448 1.08876 1.10742 0.91889 1.24992 0.95477 0.98096 0.96129 1.69967 1.28767 1.38928 1.16261 0.86459 0.80428 0.82541 0.78093 1.19674 1.21125 1.21080 1.21964 0.98764 0.96759 0.88360 1.22523 0.95752 0.89587 0.99861 0.91290 0.90858 0.91867 0.91317 0.89394 0.91252 0.90736 0.91722 0.91812 0.91414 0.90812 0.88942 0.91837 0.94011 0.91364 0.91015 0.95171 0.99095 0.95309 0.93043 0.95342 0.89725 0.94492 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 7.91 37.16 0.29 -1.63 16 2 C 0.07 0.80 1.85 -68.86 -0.13 0.68 16 3 H 0.10 1.00 6.76 -51.93 -0.35 0.65 16 4 C 0.53 7.07 6.87 -10.98 -0.08 6.99 16 5 O -0.52 -9.08 13.52 5.55 0.08 -9.01 16 6 N -0.62 -6.15 2.97 -172.50 -0.51 -6.66 16 7 C 0.10 0.69 5.57 -3.49 -0.02 0.67 16 8 C -0.14 -0.77 6.10 -26.38 -0.16 -0.93 16 9 C -0.12 -0.66 5.88 -26.69 -0.16 -0.82 16 10 C -0.14 -0.94 6.08 -26.61 -0.16 -1.11 16 11 C 0.11 1.01 6.42 -3.71 -0.02 0.99 16 12 N -0.52 -8.31 4.46 -227.87 -1.02 -9.32 16 13 C 0.06 0.93 5.39 -3.77 -0.02 0.91 16 14 C 0.06 1.10 5.61 -3.77 -0.02 1.08 16 15 N -0.54 -12.31 4.70 -235.91 -1.11 -13.41 16 16 C 0.19 5.25 4.72 -4.98 -0.02 5.23 16 17 C -0.50 -14.60 8.47 -34.44 -0.29 -14.90 16 18 H 0.06 1.81 7.13 -52.49 -0.37 1.44 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 21 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 C 0.07 1.52 5.43 -3.77 -0.02 1.50 16 26 C 0.05 0.91 4.50 -3.76 -0.02 0.89 16 27 H 0.07 0.84 6.75 -51.93 -0.35 0.49 16 28 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16 29 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.53 4.74 -51.93 -0.25 0.28 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 1.04 7.04 -51.93 -0.37 0.67 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.04 0.63 6.83 -51.93 -0.35 0.28 16 41 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 42 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 45 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.08 1.95 6.79 -51.93 -0.35 1.60 16 49 H 0.04 0.66 6.53 -51.93 -0.34 0.32 16 50 H 0.09 1.75 5.68 -51.93 -0.30 1.45 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -33.45 369.47 -10.95 -44.41 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.75 Total: -3.10 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.92 Total: 1.03 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -1.90 Total: -56.08 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.45 -10.95 -44.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161557021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.089 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds