Wall clock time and date at job start Tue Mar 31 2020 05:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47190 * 2 1 4 4 C 1.46500 * 119.99743 * 270.00105 * 3 2 1 5 5 C 1.50697 * 109.47503 * 269.99829 * 4 3 2 6 6 H 1.08006 * 119.99690 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00675 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99544 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00362 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47521 * 59.99780 * 9 7 5 11 11 H 1.48507 * 109.47317 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47060 * 299.99807 * 9 7 5 13 13 C 1.34771 * 120.00030 * 89.99780 * 3 2 1 14 14 O 1.21289 * 120.00091 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00342 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47159 * 179.97438 * 15 13 3 17 17 C 1.48562 * 111.00344 * 69.87242 * 16 15 13 18 18 C 1.54379 * 104.69842 * 159.09785 * 17 16 15 19 19 C 1.54257 * 105.06256 * 336.08765 * 18 17 16 20 20 H 1.08997 * 110.32124 * 118.89793 * 19 18 17 21 21 N 1.46900 * 110.32571 * 241.10637 * 19 18 17 22 22 C 1.48527 * 111.00127 * 176.15109 * 21 19 18 23 23 C 1.54939 * 103.22875 * 159.71760 * 22 21 19 24 24 C 1.54595 * 102.92295 * 322.58816 * 23 22 21 25 25 C 1.47904 * 110.99759 * 293.54689 * 21 19 18 26 26 C 1.48856 * 111.13147 * 185.19362 * 16 15 13 27 27 H 1.08999 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47132 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47547 * 60.00173 * 1 2 3 30 30 H 1.08997 * 109.47132 * 239.99940 * 2 1 3 31 31 H 1.09006 * 109.47431 * 119.99922 * 2 1 3 32 32 H 1.08999 * 109.47181 * 29.99886 * 4 3 2 33 33 H 1.09005 * 109.46954 * 149.99511 * 4 3 2 34 34 H 0.96999 * 119.99704 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46872 * 59.99583 * 15 13 3 36 36 H 1.09003 * 109.46709 * 299.99472 * 15 13 3 37 37 H 1.09002 * 110.41176 * 40.25880 * 17 16 15 38 38 H 1.09002 * 110.41204 * 277.93787 * 17 16 15 39 39 H 1.08998 * 110.32365 * 94.98307 * 18 17 16 40 40 H 1.09002 * 110.32581 * 217.19029 * 18 17 16 41 41 H 1.09004 * 110.66708 * 278.15007 * 22 21 19 42 42 H 1.09005 * 110.67187 * 41.28307 * 22 21 19 43 43 H 1.08999 * 110.72985 * 204.22414 * 23 22 21 44 44 H 1.09002 * 110.87586 * 81.01010 * 23 22 21 45 45 H 1.09000 * 110.30739 * 263.04216 * 24 23 22 46 46 H 1.08996 * 110.31669 * 140.87127 * 24 23 22 47 47 H 1.09003 * 109.91960 * 333.50800 * 25 21 19 48 48 H 1.08997 * 109.91830 * 94.79893 * 25 21 19 49 49 H 1.09003 * 110.39541 * 82.21242 * 26 16 15 50 50 H 1.08998 * 110.39292 * 319.79096 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7039 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3904 -2.8775 8 7 3.3492 3.1265 -3.6177 9 14 5.9132 2.0963 -3.4172 10 1 6.1401 0.6396 -3.5955 11 1 6.1608 2.7964 -4.7032 12 1 6.8412 2.6187 -2.3821 13 6 2.2429 2.0166 1.1671 14 8 2.6468 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3109 2.2059 3.5888 17 6 1.3195 3.3082 3.6838 18 6 1.4402 3.8195 5.1355 19 6 2.0167 2.6312 5.9324 20 1 2.9783 2.8996 6.3698 21 7 1.0759 2.2159 6.9814 22 6 1.5744 1.0144 7.6983 23 6 0.7878 1.0459 9.0328 24 6 0.7211 2.5555 9.3593 25 6 0.9313 3.2683 8.0105 26 6 2.1958 1.5018 4.8952 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6876 -2.0284 33 1 2.0954 3.1410 -1.1384 34 1 3.6753 3.5169 -4.4436 35 1 2.6228 0.4188 2.5298 36 1 0.9443 1.0116 2.5302 37 1 0.3138 2.9323 3.4956 38 1 1.5655 4.1027 2.9793 39 1 2.1189 4.6711 5.1817 40 1 0.4592 4.0947 5.5228 41 1 1.3442 0.1086 7.1373 42 1 2.6461 1.0928 7.8816 43 1 1.3270 0.5063 9.8113 44 1 -0.2134 0.6348 8.9032 45 1 1.5126 2.8268 10.0579 46 1 -0.2542 2.8103 9.7739 47 1 1.8348 3.8768 8.0489 48 1 0.0684 3.8942 7.7829 49 1 3.1038 0.9355 5.1028 50 1 1.3273 0.8432 4.8965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170740887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:19 Heat of formation + Delta-G solvation = -17.983890 kcal Electronic energy + Delta-G solvation = -26501.440616 eV Core-core repulsion = 22949.636991 eV Total energy + Delta-G solvation = -3551.803626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.00256 -38.97888 -37.35752 -35.15336 -33.05860 -32.60806 -30.38877 -30.04693 -29.33789 -28.05614 -27.22555 -25.47043 -22.98821 -22.58627 -22.08156 -21.55092 -20.52102 -19.96358 -18.24382 -16.77002 -16.51888 -16.37670 -16.27374 -15.57809 -15.27019 -14.85433 -14.42553 -14.25181 -13.84862 -13.80033 -13.36585 -13.26164 -13.19044 -12.92898 -12.72146 -12.29192 -12.17844 -12.00079 -11.76736 -11.66612 -11.55245 -11.44097 -11.25400 -11.14133 -11.11722 -10.98473 -10.88231 -10.84526 -10.69519 -10.63872 -10.46830 -10.07709 -9.58799 -8.83415 -8.66545 -8.38522 -8.23949 -7.57948 -5.99546 -4.03821 3.35203 3.39407 3.41915 3.51267 3.55709 3.89657 4.28637 4.31561 4.41305 4.50740 4.60986 4.70927 4.74076 4.98245 5.09061 5.16991 5.20568 5.31750 5.32858 5.35012 5.36236 5.42703 5.45577 5.51094 5.55754 5.60659 5.65429 5.66946 5.69551 5.70984 5.80767 5.82979 5.88416 5.96929 6.03872 6.07426 6.25833 6.32501 6.50214 6.62168 6.73877 6.96733 7.04807 7.19845 7.50315 7.62795 7.97674 8.29425 8.50886 8.96485 9.21118 9.61199 11.08491 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.002750 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.458188 B =10179.587061 C =10552.703936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.524 6.524 15 C 0.028 3.972 16 N -0.489 5.489 17 C 0.039 3.961 18 C -0.114 4.114 19 C 0.073 3.927 20 H 0.054 0.946 21 N -0.512 5.512 22 C 0.033 3.967 23 C -0.124 4.124 24 C -0.132 4.132 25 C 0.036 3.964 26 C 0.040 3.960 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 -6.055 23.355 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.104 4.104 16 N -0.213 5.213 17 C -0.089 4.089 18 C -0.153 4.153 19 C -0.036 4.036 20 H 0.072 0.928 21 N -0.237 5.237 22 C -0.095 4.095 23 C -0.162 4.162 24 C -0.170 4.170 25 C -0.092 4.092 26 C -0.089 4.089 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.513 -5.223 22.769 24.539 hybrid contribution 0.955 -0.452 0.026 1.057 sum -6.558 -5.675 22.795 24.389 Atomic orbital electron populations 1.22220 0.96938 1.01317 1.02223 1.21389 0.93380 0.84415 1.02545 1.48252 1.64231 1.13204 1.07691 1.19226 0.96150 0.93586 0.78108 1.21411 0.96960 1.31767 1.06140 0.92558 1.24932 0.97800 0.94974 0.96436 1.69928 1.35697 1.33541 1.14380 0.86568 0.84929 0.78190 0.77778 1.20306 1.21232 1.20162 1.20071 0.78829 0.87123 0.84631 1.90651 1.44621 1.17853 1.86853 1.22247 1.00367 0.96458 0.91326 1.65248 1.47084 1.08479 1.00477 1.23141 0.93231 0.95691 0.96862 1.22355 1.01364 0.96965 0.94577 1.22542 0.93591 0.95450 0.92053 0.92848 1.64897 1.44474 1.04206 1.10137 1.23230 0.97355 0.94613 0.94290 1.22473 1.01005 0.96123 0.96559 1.22406 1.02172 0.95515 0.96891 1.22835 1.01259 0.94517 0.90562 1.23183 1.00852 0.95672 0.89158 0.92235 0.93273 0.92019 0.89972 0.91959 0.95145 0.93987 0.92736 0.88627 0.92390 0.94240 0.88445 0.91010 0.90606 0.89975 0.93638 0.91182 0.90766 0.91615 0.91056 0.93632 0.90338 0.90413 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.89 2.46 -175.06 -0.43 -13.32 16 4 C 0.25 6.59 5.16 -5.20 -0.03 6.56 16 5 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 9 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.51 10.83 7.48 -10.99 -0.08 10.75 16 14 O -0.52 -13.48 14.42 5.55 0.08 -13.40 16 15 C 0.03 0.44 3.86 -4.98 -0.02 0.42 16 16 N -0.49 -7.68 5.07 -231.15 -1.17 -8.85 16 17 C 0.04 0.58 5.79 -2.18 -0.01 0.57 16 18 C -0.11 -1.39 6.34 -25.35 -0.16 -1.55 16 19 C 0.07 0.82 2.47 -66.33 -0.16 0.65 16 20 H 0.05 0.62 8.01 -51.93 -0.42 0.20 16 21 N -0.51 -5.02 5.00 -220.85 -1.10 -6.13 16 22 C 0.03 0.27 5.82 -1.90 -0.01 0.26 16 23 C -0.12 -0.84 7.06 -24.87 -0.18 -1.01 16 24 C -0.13 -0.89 6.93 -25.37 -0.18 -1.06 16 25 C 0.04 0.30 5.88 -2.75 -0.02 0.29 16 26 C 0.04 0.48 5.31 -2.01 -0.01 0.47 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.10 1.37 7.39 -51.93 -0.38 0.99 16 36 H 0.06 0.81 6.93 -51.93 -0.36 0.45 16 37 H 0.04 0.57 7.82 -51.93 -0.41 0.17 16 38 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.85 7.37 -51.93 -0.38 0.46 16 41 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 42 H 0.05 0.37 8.02 -51.93 -0.42 -0.04 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.39 7.68 -51.93 -0.40 -0.01 16 48 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.05 0.63 7.77 -51.93 -0.40 0.22 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -33.25 386.44 -11.22 -44.46 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -9.21 Total: -1.92 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.92 Total: 2.37 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -1.97 Total: -54.57 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.25 -11.22 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170740887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.478 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds