Wall clock time and date at job start Tue Mar 31 2020 05:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47190 * 2 1 4 4 C 1.46500 * 119.99743 * 270.00105 * 3 2 1 5 5 C 1.50697 * 109.47503 * 269.99829 * 4 3 2 6 6 H 1.08006 * 119.99690 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00675 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99544 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00362 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47521 * 59.99780 * 9 7 5 11 11 H 1.48507 * 109.47317 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47060 * 299.99807 * 9 7 5 13 13 C 1.34771 * 120.00030 * 89.99780 * 3 2 1 14 14 O 1.21289 * 120.00091 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00342 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47159 * 179.97438 * 15 13 3 17 17 C 1.48562 * 111.00344 * 69.87242 * 16 15 13 18 18 C 1.54379 * 104.69842 * 159.09785 * 17 16 15 19 19 C 1.54257 * 105.06256 * 336.08765 * 18 17 16 20 20 H 1.08997 * 110.32124 * 118.89793 * 19 18 17 21 21 N 1.46900 * 110.32571 * 241.10637 * 19 18 17 22 22 C 1.48527 * 111.00127 * 176.15109 * 21 19 18 23 23 C 1.54939 * 103.22875 * 159.71760 * 22 21 19 24 24 C 1.54595 * 102.92295 * 322.58816 * 23 22 21 25 25 C 1.47904 * 110.99759 * 293.54689 * 21 19 18 26 26 C 1.48856 * 111.13147 * 185.19362 * 16 15 13 27 27 H 1.08999 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47132 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47547 * 60.00173 * 1 2 3 30 30 H 1.08997 * 109.47132 * 239.99940 * 2 1 3 31 31 H 1.09006 * 109.47431 * 119.99922 * 2 1 3 32 32 H 1.08999 * 109.47181 * 29.99886 * 4 3 2 33 33 H 1.09005 * 109.46954 * 149.99511 * 4 3 2 34 34 H 0.96999 * 119.99704 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46872 * 59.99583 * 15 13 3 36 36 H 1.09003 * 109.46709 * 299.99472 * 15 13 3 37 37 H 1.09002 * 110.41176 * 40.25880 * 17 16 15 38 38 H 1.09002 * 110.41204 * 277.93787 * 17 16 15 39 39 H 1.08998 * 110.32365 * 94.98307 * 18 17 16 40 40 H 1.09002 * 110.32581 * 217.19029 * 18 17 16 41 41 H 1.09004 * 110.66708 * 278.15007 * 22 21 19 42 42 H 1.09005 * 110.67187 * 41.28307 * 22 21 19 43 43 H 1.08999 * 110.72985 * 204.22414 * 23 22 21 44 44 H 1.09002 * 110.87586 * 81.01010 * 23 22 21 45 45 H 1.09000 * 110.30739 * 263.04216 * 24 23 22 46 46 H 1.08996 * 110.31669 * 140.87127 * 24 23 22 47 47 H 1.09003 * 109.91960 * 333.50800 * 25 21 19 48 48 H 1.08997 * 109.91830 * 94.79893 * 25 21 19 49 49 H 1.09003 * 110.39541 * 82.21242 * 26 16 15 50 50 H 1.08998 * 110.39292 * 319.79096 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7039 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3904 -2.8775 8 7 3.3492 3.1265 -3.6177 9 14 5.9132 2.0963 -3.4172 10 1 6.1401 0.6396 -3.5955 11 1 6.1608 2.7964 -4.7032 12 1 6.8412 2.6187 -2.3821 13 6 2.2429 2.0166 1.1671 14 8 2.6468 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3109 2.2059 3.5888 17 6 1.3195 3.3082 3.6838 18 6 1.4402 3.8195 5.1355 19 6 2.0167 2.6312 5.9324 20 1 2.9783 2.8996 6.3698 21 7 1.0759 2.2159 6.9814 22 6 1.5744 1.0144 7.6983 23 6 0.7878 1.0459 9.0328 24 6 0.7211 2.5555 9.3593 25 6 0.9313 3.2683 8.0105 26 6 2.1958 1.5018 4.8952 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6876 -2.0284 33 1 2.0954 3.1410 -1.1384 34 1 3.6753 3.5169 -4.4436 35 1 2.6228 0.4188 2.5298 36 1 0.9443 1.0116 2.5302 37 1 0.3138 2.9323 3.4956 38 1 1.5655 4.1027 2.9793 39 1 2.1189 4.6711 5.1817 40 1 0.4592 4.0947 5.5228 41 1 1.3442 0.1086 7.1373 42 1 2.6461 1.0928 7.8816 43 1 1.3270 0.5063 9.8113 44 1 -0.2134 0.6348 8.9032 45 1 1.5126 2.8268 10.0579 46 1 -0.2542 2.8103 9.7739 47 1 1.8348 3.8768 8.0489 48 1 0.0684 3.8942 7.7829 49 1 3.1038 0.9355 5.1028 50 1 1.3273 0.8432 4.8965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170740887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:18 Heat of formation + Delta-G solvation = -41.408695 kcal Electronic energy + Delta-G solvation = -26502.456392 eV Core-core repulsion = 22949.636991 eV Total energy + Delta-G solvation = -3552.819401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13834 -40.26000 -38.39300 -36.85000 -34.94077 -33.83459 -31.65007 -31.29590 -30.15342 -29.32854 -28.57270 -26.91838 -24.74237 -24.01877 -22.84515 -22.57210 -21.32302 -20.84429 -19.81931 -18.60307 -17.91306 -17.66693 -17.34773 -16.87418 -16.52179 -16.21631 -16.14445 -15.20595 -15.07632 -14.83537 -14.71809 -14.50114 -14.21334 -14.08773 -13.87723 -13.55352 -13.51462 -13.24768 -13.17421 -13.06144 -12.78432 -12.64365 -12.53462 -12.47311 -12.19692 -12.13284 -12.02011 -11.98942 -11.92177 -11.82368 -11.73088 -11.65757 -11.38952 -10.63888 -10.50775 -9.49823 -9.39473 -9.34734 -8.21732 -6.36526 1.35713 1.40581 1.47707 1.88175 2.22803 2.40927 2.83929 3.07356 3.26972 3.48986 3.59655 3.76420 3.83898 3.99790 4.09479 4.10808 4.15584 4.24057 4.30834 4.38966 4.39966 4.44606 4.58535 4.62811 4.64165 4.68995 4.74195 4.85816 4.92040 4.93369 4.97776 4.98738 5.00833 5.02833 5.05501 5.10943 5.12193 5.22169 5.25205 5.34629 5.37728 5.58857 5.74391 5.82512 5.91767 5.99881 6.08043 6.15202 6.71576 6.84478 7.29714 7.55605 8.85091 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.002750 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.458188 B =10179.587061 C =10552.703936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.497 3.503 14 O -0.581 6.581 15 C 0.044 3.956 16 N -0.516 5.516 17 C 0.041 3.959 18 C -0.106 4.106 19 C 0.080 3.920 20 H 0.050 0.950 21 N -0.519 5.519 22 C 0.029 3.971 23 C -0.120 4.120 24 C -0.129 4.129 25 C 0.032 3.968 26 C 0.047 3.953 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.021 0.979 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.041 0.959 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 -8.631 25.520 28.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.285 3.715 14 O -0.460 6.460 15 C -0.087 4.087 16 N -0.241 5.241 17 C -0.087 4.087 18 C -0.145 4.145 19 C -0.029 4.029 20 H 0.068 0.932 21 N -0.244 5.244 22 C -0.098 4.098 23 C -0.158 4.158 24 C -0.167 4.167 25 C -0.096 4.096 26 C -0.081 4.081 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.039 0.961 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.106 0.894 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.470 -7.856 24.960 27.212 hybrid contribution 0.887 0.375 -0.635 1.154 sum -6.583 -7.481 24.325 26.287 Atomic orbital electron populations 1.22144 0.94698 1.03487 1.01464 1.21737 0.95196 0.81406 1.03907 1.48289 1.64275 1.15147 1.06143 1.18651 0.95217 0.91370 0.80438 1.21683 0.97891 1.31945 1.06450 0.92961 1.25875 1.02445 0.94494 0.96460 1.70053 1.37823 1.34250 1.14816 0.85472 0.78976 0.79083 0.77300 1.18322 1.20294 1.20450 1.21133 0.77399 0.86708 0.86229 1.90624 1.47093 1.20510 1.87809 1.22131 1.02402 0.96118 0.88082 1.65165 1.47728 1.09226 1.01957 1.23005 0.93218 0.94834 0.97661 1.22274 1.01962 0.97284 0.92951 1.22401 0.93681 0.94544 0.92281 0.93216 1.64897 1.43926 1.05120 1.10496 1.23310 0.97596 0.93942 0.94940 1.22472 1.00977 0.96180 0.96136 1.22406 1.02929 0.95355 0.95999 1.22894 1.01038 0.94414 0.91204 1.23195 1.01881 0.95769 0.87207 0.88495 0.92512 0.94339 0.90920 0.88242 0.96106 0.98849 0.92436 0.86185 0.89691 0.93785 0.92492 0.91589 0.89537 0.89592 0.93619 0.89773 0.90747 0.90863 0.90289 0.94011 0.90468 0.89365 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.29 16 2 C 0.10 3.09 5.93 86.38 0.51 3.60 16 3 N -0.61 -26.46 2.46 -826.15 -2.03 -28.49 16 4 C 0.26 14.76 5.16 85.63 0.44 15.20 16 5 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 9 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.50 21.57 7.48 87.66 0.66 22.23 16 14 O -0.58 -31.52 14.42 -3.06 -0.04 -31.56 16 15 C 0.04 1.32 3.86 85.56 0.33 1.65 16 16 N -0.52 -15.75 5.07 -885.21 -4.49 -20.24 16 17 C 0.04 1.25 5.79 86.45 0.50 1.75 16 18 C -0.11 -2.54 6.34 31.49 0.20 -2.34 16 19 C 0.08 1.68 2.47 45.81 0.11 1.79 16 20 H 0.05 1.08 8.01 -2.39 -0.02 1.06 16 21 N -0.52 -9.05 5.00 -852.64 -4.26 -13.32 16 22 C 0.03 0.41 5.82 86.65 0.50 0.91 16 23 C -0.12 -1.28 7.06 31.80 0.22 -1.06 16 24 C -0.13 -1.42 6.93 31.47 0.22 -1.20 16 25 C 0.03 0.48 5.88 86.45 0.51 0.99 16 26 C 0.05 1.03 5.31 86.39 0.46 1.49 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.10 2.35 6.44 -2.38 -0.02 2.33 16 32 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 33 H -0.01 -0.43 7.42 -2.38 -0.02 -0.45 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.12 3.03 7.39 -2.39 -0.02 3.01 16 36 H 0.09 2.11 6.93 -2.39 -0.02 2.10 16 37 H 0.04 1.27 7.82 -2.39 -0.02 1.25 16 38 H 0.06 2.19 6.91 -2.39 -0.02 2.18 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 1.86 7.37 -2.39 -0.02 1.84 16 41 H 0.09 1.12 7.92 -2.39 -0.02 1.10 16 42 H 0.05 0.64 8.02 -2.38 -0.02 0.62 16 43 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.04 0.65 7.68 -2.39 -0.02 0.64 16 48 H 0.08 1.16 7.94 -2.39 -0.02 1.14 16 49 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.07 1.31 7.77 -2.39 -0.02 1.29 16 Total: -1.00 -76.30 386.44 -1.52 -77.82 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.88 Total: 14.42 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 6.11 Total: 10.66 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -10.50 Total: -119.39 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.04 Total: -31.56 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.30 -1.52 -77.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170740887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.412 kcal (2) G-P(sol) polarization free energy of solvation -76.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds