Wall clock time and date at job start Tue Mar 31 2020 03:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00190 * 2 1 4 4 C 1.50706 * 109.47215 * 293.96235 * 3 2 1 5 5 H 1.08001 * 119.99317 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00441 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99819 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00249 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47053 * 90.00045 * 8 6 4 10 10 H 1.48496 * 109.47474 * 209.99665 * 8 6 4 11 11 H 1.48501 * 109.47332 * 330.00431 * 8 6 4 12 12 C 1.46898 * 111.00349 * 123.95495 * 2 1 3 13 13 C 1.53005 * 109.47292 * 164.01276 * 12 2 1 14 14 H 1.08996 * 109.47096 * 58.50431 * 13 12 2 15 15 O 1.42909 * 109.46562 * 298.50770 * 13 12 2 16 16 C 1.52992 * 109.47232 * 178.50961 * 13 12 2 17 17 N 1.46900 * 109.47086 * 184.99403 * 16 13 12 18 18 C 1.46907 * 111.00067 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.46880 * 180.02562 * 18 17 16 20 20 N 1.30831 * 125.96164 * 275.30505 * 19 18 17 21 21 C 1.33242 * 109.82963 * 180.12890 * 20 19 18 22 22 C 1.50701 * 125.52724 * 179.85950 * 21 20 19 23 23 C 1.52994 * 117.50276 * 119.71387 * 22 21 20 24 24 C 1.52999 * 60.03196 * 107.50072 * 23 22 21 25 25 N 1.30711 * 108.94787 * 359.58913 * 21 20 19 26 26 N 1.34432 * 125.96346 * 94.97845 * 19 18 17 27 27 H 0.96995 * 126.81640 * 0.02562 * 26 19 18 28 28 H 1.09004 * 109.46522 * 301.52764 * 1 2 3 29 29 H 1.08997 * 109.47400 * 61.52829 * 1 2 3 30 30 H 1.09003 * 109.46746 * 181.53515 * 1 2 3 31 31 H 1.09005 * 109.46763 * 53.95267 * 3 2 1 32 32 H 1.08992 * 109.47827 * 173.95922 * 3 2 1 33 33 H 0.96993 * 120.00070 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47298 * 44.00849 * 12 2 1 35 35 H 1.09002 * 109.47093 * 284.01050 * 12 2 1 36 36 H 0.96689 * 114.00183 * 299.99962 * 15 13 12 37 37 H 1.08999 * 109.47259 * 64.99861 * 16 13 12 38 38 H 1.08995 * 109.46994 * 304.99839 * 16 13 12 39 39 H 1.00907 * 110.99803 * 56.04603 * 17 16 13 40 40 H 1.08998 * 109.46487 * 60.00375 * 18 17 16 41 41 H 1.08997 * 109.46908 * 300.00334 * 18 17 16 42 42 H 1.09001 * 115.55029 * 334.04143 * 22 21 20 43 43 H 1.08994 * 117.50402 * 215.00117 * 23 22 21 44 44 H 1.09004 * 117.49540 * 359.97438 * 23 22 21 45 45 H 1.09005 * 117.50053 * 107.50589 * 24 23 22 46 46 H 1.09007 * 117.49862 * 252.52075 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6368 2.0473 -1.2984 5 1 1.0744 1.5113 -2.0486 6 6 2.0266 3.3496 -1.5285 7 7 2.7111 4.0023 -0.6146 8 14 1.5826 4.1869 -3.1381 9 1 0.2700 4.8669 -2.9968 10 1 2.6246 5.1886 -3.4790 11 1 1.5001 3.1712 -4.2183 12 6 1.9955 -0.7660 1.1375 13 6 3.4729 -1.0839 0.8983 14 1 4.0282 -0.1549 0.7696 15 8 3.6034 -1.8838 -0.2787 16 6 4.0309 -1.8494 2.0997 17 7 5.4755 -2.0501 1.9244 18 6 6.0471 -2.7831 3.0620 19 6 7.5271 -2.9690 2.8473 20 7 8.0889 -3.9287 2.1581 21 6 9.4134 -3.7858 2.1807 22 6 10.4043 -4.6974 1.5038 23 6 11.3197 -4.0827 0.4432 24 6 11.8885 -4.4784 1.8073 25 7 9.7138 -2.7234 2.8805 26 7 8.5001 -2.1741 3.3253 27 1 8.3865 -1.3792 3.8694 28 1 -0.3632 0.5374 0.8760 29 1 -0.3634 0.4899 -0.9033 30 1 -0.3633 -1.0273 0.0275 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3445 0.1081 33 1 2.9856 4.9184 -0.7766 34 1 1.4357 -1.6956 1.2399 35 1 1.8935 -0.1782 2.0498 36 1 3.1335 -2.7277 -0.2348 37 1 3.5362 -2.8177 2.1752 38 1 3.8513 -1.2777 3.0101 39 1 5.9489 -1.1696 1.7874 40 1 5.5663 -3.7579 3.1445 41 1 5.8815 -2.2175 3.9788 42 1 10.0685 -5.7223 1.3459 43 1 11.5863 -4.7031 -0.4124 44 1 11.2050 -3.0189 0.2347 45 1 12.5293 -5.3593 1.8491 46 1 12.1480 -3.6749 2.4967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582355893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:20 Heat of formation + Delta-G solvation = 70.996551 kcal Electronic energy + Delta-G solvation = -24781.287238 eV Core-core repulsion = 21129.801750 eV Total energy + Delta-G solvation = -3651.485487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.38913 -38.27924 -37.47297 -36.17565 -35.01293 -32.64008 -32.48689 -31.73296 -29.68683 -27.41617 -26.88474 -24.82754 -24.62642 -23.21522 -22.64552 -21.72512 -21.12897 -20.08715 -20.01794 -18.25609 -16.69660 -16.54544 -16.09289 -15.78888 -15.52754 -15.32225 -14.90909 -14.67712 -14.60613 -14.24522 -13.94007 -13.46191 -13.23695 -13.07533 -12.56140 -12.39565 -12.04952 -11.98412 -11.84842 -11.76886 -11.40914 -11.39573 -11.15916 -10.93036 -10.81293 -10.72397 -10.66666 -10.35619 -10.19399 -10.12878 -9.76556 -9.63883 -9.50091 -9.13444 -8.64234 -8.42166 -7.21443 -6.02403 -4.02400 1.28582 2.33409 2.51881 3.32864 3.39167 3.44716 3.47273 3.72134 3.95191 4.26563 4.40116 4.44280 4.58782 4.68265 4.75643 4.80574 4.88468 5.15967 5.22059 5.29115 5.32645 5.36531 5.37441 5.50993 5.54964 5.62745 5.69324 5.79403 5.85263 6.00650 6.03747 6.08445 6.17402 6.31986 6.43976 6.61230 6.71476 6.79902 7.04724 7.25922 7.29391 7.80685 7.90121 8.07879 8.17136 8.26667 8.55685 9.04868 9.61581 11.08854 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.002395 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.882668 B =11689.996757 C =12617.592771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.902 5.902 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.101 0.899 15 O -0.529 6.529 16 C 0.030 3.970 17 N -0.668 5.668 18 C 0.137 3.863 19 C 0.293 3.707 20 N -0.514 5.514 21 C 0.257 3.743 22 C -0.073 4.073 23 C -0.157 4.157 24 C -0.162 4.162 25 N -0.314 5.314 26 N -0.481 5.481 27 H 0.440 0.560 28 H 0.009 0.991 29 H 0.074 0.926 30 H 0.043 0.957 31 H -0.012 1.012 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.362 0.638 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.346 0.654 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.132 0.868 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.983 -16.582 11.003 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.542 5.542 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.118 0.882 15 O -0.332 6.332 16 C -0.100 4.100 17 N -0.301 5.301 18 C 0.005 3.995 19 C 0.014 3.986 20 N -0.242 5.242 21 C -0.025 4.025 22 C -0.094 4.094 23 C -0.196 4.196 24 C -0.200 4.200 25 N -0.143 5.143 26 N -0.200 5.200 27 H 0.285 0.715 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.005 0.995 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.207 0.793 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.164 0.836 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.150 0.850 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.064 -16.741 9.950 22.908 hybrid contribution -1.135 1.932 1.375 2.629 sum 10.929 -14.809 11.325 21.610 Atomic orbital electron populations 1.22197 0.88791 0.98928 1.00922 1.62021 1.06538 1.17808 1.39120 1.19773 0.95427 0.81485 0.96548 1.21159 1.34516 0.96748 1.01695 0.91843 1.24985 0.95330 0.97393 0.97015 1.69950 1.38658 1.11408 1.34166 0.86493 0.77896 0.79208 0.83827 1.20814 1.21276 1.19684 1.22675 0.95814 0.98297 0.93585 1.21859 0.94619 0.94007 0.83761 0.88163 1.86710 1.75444 1.33161 1.37866 1.22786 0.87502 1.01088 0.98634 1.60267 1.03750 1.26373 1.39697 1.20417 0.84108 1.01995 0.92931 1.24206 0.93934 0.88031 0.92423 1.70308 1.06263 1.25569 1.22108 1.23204 0.90569 0.92961 0.95726 1.20080 0.88368 0.97795 1.03107 1.23044 1.01545 1.02113 0.92883 1.23054 0.93546 1.03954 0.99439 1.77915 1.03125 1.13307 1.19975 1.48014 1.04092 1.25047 1.42818 0.71474 0.97200 0.90775 0.93805 0.99470 0.95138 0.93011 0.91961 0.95315 0.79274 0.90249 0.94208 0.83576 0.87136 0.92885 0.85045 0.87621 0.88428 0.87862 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.32 60.06 0.56 1.33 16 2 N -0.53 -11.27 4.60 -244.36 -1.12 -12.40 16 3 C 0.19 4.98 4.57 -4.97 -0.02 4.96 16 4 C -0.50 -14.27 8.54 -34.44 -0.29 -14.56 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.03 0.43 4.63 -3.82 -0.02 0.41 16 13 C 0.12 1.83 3.17 -26.73 -0.08 1.74 16 14 H 0.10 1.86 6.55 -51.93 -0.34 1.52 16 15 O -0.53 -9.05 13.18 -35.23 -0.46 -9.51 16 16 C 0.03 0.33 5.32 -3.83 -0.02 0.31 16 17 N -0.67 -7.57 6.44 -115.06 -0.74 -8.32 16 18 C 0.14 1.22 6.31 -4.97 -0.03 1.19 16 19 C 0.29 3.30 7.75 -155.69 -1.21 2.09 16 20 N -0.51 -7.03 11.19 -8.16 -0.09 -7.12 16 21 C 0.26 3.29 7.69 -156.85 -1.21 2.09 16 22 C -0.07 -0.72 6.33 -91.74 -0.58 -1.30 16 23 C -0.16 -1.33 10.23 -26.73 -0.27 -1.60 16 24 C -0.16 -1.26 10.14 -26.70 -0.27 -1.53 16 25 N -0.31 -3.94 12.34 32.42 0.40 -3.54 16 26 N -0.48 -4.94 7.45 32.62 0.24 -4.70 16 27 H 0.44 3.05 8.96 -182.34 -1.63 1.41 16 28 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 29 H 0.07 1.53 6.90 -51.93 -0.36 1.17 16 30 H 0.04 0.70 7.97 -51.93 -0.41 0.28 16 31 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 32 H 0.03 0.84 6.38 -51.93 -0.33 0.51 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 35 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 36 H 0.36 4.77 9.04 45.56 0.41 5.19 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.35 4.09 8.72 -39.29 -0.34 3.74 16 40 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.89 7.88 -51.92 -0.41 0.48 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -35.07 383.92 -11.80 -46.87 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.98 Total: 5.55 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.55 Total: -3.44 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.58 Total: -62.18 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.46 Total: -9.51 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.07 -11.80 -46.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582355893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.870 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds