Wall clock time and date at job start Tue Mar 31 2020 04:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46923 * 2 1 4 4 N 1.46896 * 109.47272 * 119.99907 * 2 1 3 5 5 C 1.47841 * 111.00036 * 49.88337 * 4 2 1 6 6 C 1.54903 * 104.79802 * 146.36354 * 5 4 2 7 7 C 1.55396 * 101.74323 * 323.02464 * 6 5 4 8 8 C 1.47441 * 111.00192 * 170.72945 * 4 2 1 9 9 H 1.09000 * 109.88751 * 117.17280 * 8 4 2 10 10 C 1.50695 * 109.88795 * 356.14635 * 8 4 2 11 11 O 1.21285 * 120.00487 * 297.67649 * 10 8 4 12 12 N 1.34785 * 119.99985 * 117.67573 * 10 8 4 13 13 C 1.46928 * 120.62783 * 354.72356 * 12 10 8 14 14 C 1.53191 * 108.77162 * 126.41463 * 13 12 10 15 15 C 1.53041 * 109.31125 * 54.63612 * 14 13 12 16 16 C 1.53041 * 109.53951 * 298.63241 * 15 14 13 17 17 H 1.09003 * 109.49468 * 301.38132 * 16 15 14 18 18 N 1.46498 * 109.49614 * 181.31638 * 16 15 14 19 19 C 1.36940 * 119.99735 * 85.27971 * 18 16 15 20 20 H 1.07997 * 120.00238 * 359.71906 * 19 18 16 21 21 C 1.38816 * 119.99801 * 179.72215 * 19 18 16 22 22 N 1.31622 * 120.00039 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99744 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47073 * 60.00512 * 23 21 19 25 25 H 1.48504 * 109.46818 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47359 * 300.00003 * 23 21 19 27 27 C 1.46921 * 120.63166 * 174.75183 * 12 10 8 28 28 H 1.08994 * 109.46988 * 299.99938 * 1 2 3 29 29 H 1.08998 * 109.46831 * 60.00576 * 1 2 3 30 30 H 1.09001 * 109.46533 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47316 * 240.00272 * 2 1 3 32 32 H 1.08998 * 109.46871 * 53.29525 * 3 2 1 33 33 H 1.09000 * 109.46996 * 173.30021 * 3 2 1 34 34 H 1.09003 * 109.47290 * 293.29646 * 3 2 1 35 35 H 1.08997 * 110.37886 * 265.19575 * 5 4 2 36 36 H 1.09002 * 110.37319 * 27.53514 * 5 4 2 37 37 H 1.09005 * 110.98881 * 81.02171 * 6 5 4 38 38 H 1.09004 * 110.99583 * 204.80236 * 6 5 4 39 39 H 1.09005 * 110.67865 * 277.17558 * 7 6 5 40 40 H 1.09003 * 110.85228 * 153.85953 * 7 6 5 41 41 H 1.08998 * 109.58769 * 6.62788 * 13 12 10 42 42 H 1.08996 * 109.70396 * 246.26967 * 13 12 10 43 43 H 1.09004 * 109.50102 * 294.68467 * 14 13 12 44 44 H 1.09004 * 109.49963 * 174.58644 * 14 13 12 45 45 H 1.09005 * 109.45942 * 178.61078 * 15 14 13 46 46 H 1.09001 * 109.45298 * 58.65086 * 15 14 13 47 47 H 0.96996 * 120.00552 * 264.99512 * 18 16 15 48 48 H 0.96994 * 119.99650 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.58813 * 113.79625 * 27 12 10 50 50 H 1.09003 * 109.58746 * 353.37139 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3579 -2.0045 1.3610 6 6 2.4384 -2.9176 1.9921 7 6 3.7270 -2.4224 1.2786 8 6 3.4766 -0.9072 1.1278 9 1 3.9711 -0.3675 1.9355 10 6 4.0002 -0.4309 -0.2026 11 8 3.6173 -0.9541 -1.2276 12 7 4.8941 0.5766 -0.2535 13 6 5.2806 1.2968 0.9675 14 6 6.8074 1.2755 1.0901 15 6 7.4260 1.8358 -0.1927 16 6 7.0245 0.9581 -1.3804 17 1 7.3617 -0.0640 -1.2078 18 7 7.6427 1.4771 -2.6029 19 6 8.9182 1.1062 -2.9359 20 1 9.4700 0.4347 -2.2949 21 6 9.5019 1.5934 -4.0973 22 7 8.8292 2.4115 -4.8787 23 14 11.2420 1.0880 -4.5510 24 1 11.3034 -0.3872 -4.7104 25 1 11.6297 1.7398 -5.8279 26 1 12.1760 1.5092 -3.4762 27 6 5.5002 0.9758 -1.5309 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.5820 1.9898 0.8239 33 1 3.1234 1.4449 0.1199 34 1 1.7779 1.9206 -0.9439 35 1 0.4991 -1.9171 2.0266 36 1 1.0493 -2.3959 0.3916 37 1 2.5046 -2.7578 3.0683 38 1 2.2440 -3.9662 1.7663 39 1 3.8318 -2.8947 0.3018 40 1 4.6072 -2.6083 1.8941 41 1 4.8374 0.8086 1.8354 42 1 4.9329 2.3283 0.9113 43 1 7.1462 0.2502 1.2396 44 1 7.1129 1.8875 1.9388 45 1 8.5120 1.8447 -0.0984 46 1 7.0674 2.8523 -0.3547 47 1 7.1472 2.0802 -3.1787 48 1 9.2372 2.7523 -5.6900 49 1 5.1706 1.9811 -1.7934 50 1 5.2019 0.2758 -2.3115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999143753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:06 Heat of formation + Delta-G solvation = 2.870277 kcal Electronic energy + Delta-G solvation = -27816.885097 eV Core-core repulsion = 24265.985776 eV Total energy + Delta-G solvation = -3550.899321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.26976 -38.61460 -36.96543 -34.58277 -34.55316 -32.31136 -31.33236 -30.11298 -29.29964 -28.15451 -26.98207 -25.27384 -24.02041 -22.54901 -22.08357 -21.41224 -20.77189 -19.71959 -18.51657 -17.44693 -17.20350 -16.61406 -16.09340 -15.25409 -15.10260 -14.79168 -14.22009 -14.13090 -14.05828 -13.76830 -13.53720 -13.16449 -13.11142 -12.92751 -12.74873 -12.44733 -12.36791 -12.22360 -12.04566 -11.78492 -11.35966 -11.32214 -11.14476 -11.01300 -10.95620 -10.90606 -10.85801 -10.81404 -10.52666 -10.39662 -10.34362 -10.14250 -9.88925 -9.68722 -8.92395 -8.54103 -8.12332 -7.00614 -5.79119 -3.08900 2.56049 3.06367 3.42805 3.47398 3.48254 3.80568 4.28234 4.44435 4.54826 4.58089 4.76034 4.90664 5.00459 5.01867 5.10709 5.19285 5.26763 5.33690 5.43551 5.50776 5.54360 5.55896 5.61944 5.64093 5.65930 5.71000 5.73204 5.74072 5.80112 5.81722 5.87249 5.93888 6.00132 6.04268 6.13044 6.15891 6.22228 6.30918 6.37808 6.53047 6.67371 6.76476 6.85554 6.92492 7.02676 7.52317 7.67086 8.22394 8.38908 9.49923 10.05143 10.40141 11.43288 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.022478 B = 0.003380 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.387951 B = 8281.870027 C = 8449.152975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.031 3.969 3 C -0.161 4.161 4 N -0.499 5.499 5 C 0.040 3.960 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.045 3.955 9 H 0.107 0.893 10 C 0.510 3.490 11 O -0.538 6.538 12 N -0.601 5.601 13 C 0.101 3.899 14 C -0.133 4.133 15 C -0.137 4.137 16 C 0.169 3.831 17 H 0.049 0.951 18 N -0.721 5.721 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.106 3.894 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.065 0.935 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.932 -5.570 17.214 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.219 4.219 4 N -0.225 5.225 5 C -0.087 4.087 6 C -0.165 4.165 7 C -0.168 4.168 8 C -0.066 4.066 9 H 0.124 0.876 10 C 0.299 3.701 11 O -0.416 6.416 12 N -0.334 5.334 13 C -0.022 4.022 14 C -0.172 4.172 15 C -0.178 4.178 16 C 0.058 3.942 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.017 4.017 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.218 0.782 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.074 -5.577 17.017 23.407 hybrid contribution 1.091 -0.295 -1.138 1.604 sum -13.982 -5.872 15.879 21.957 Atomic orbital electron populations 1.21877 0.94564 1.01649 1.01923 1.22532 0.95699 0.95849 0.93555 1.22200 1.03098 0.95035 1.01592 1.64178 1.01189 1.19318 1.37845 1.23087 0.97460 0.88166 1.00002 1.22738 0.94114 0.99315 1.00288 1.22804 0.98864 0.92957 1.02172 1.22808 0.90783 0.97619 0.95350 0.87554 1.20784 0.78763 0.79137 0.91443 1.90602 1.57401 1.57318 1.36286 1.48267 1.41987 1.33749 1.09398 1.21940 0.96288 0.97139 0.86796 1.21943 0.94097 1.01846 0.99311 1.22282 1.01120 1.00079 0.94288 1.20465 0.89598 0.96248 0.87859 0.93318 1.42302 1.14862 1.56054 1.22981 1.19158 0.90357 1.23096 1.04550 0.91228 1.24746 0.98516 0.99961 0.97501 1.69651 1.37125 1.36195 1.15001 0.86265 0.84447 0.77953 0.77494 1.21239 1.21657 1.21242 1.22004 0.94214 1.00744 0.84751 0.92296 0.92285 0.92768 0.89190 0.92427 0.90700 0.92485 0.89977 0.93026 0.90516 0.90559 0.90153 0.90152 0.89587 0.91140 0.91828 0.91264 0.91559 0.92465 0.78198 0.93390 0.91719 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.87 37.16 0.33 -1.14 16 2 C 0.03 0.39 2.07 -67.71 -0.14 0.25 16 3 C -0.16 -1.99 8.89 37.16 0.33 -1.66 16 4 N -0.50 -5.65 5.03 -216.82 -1.09 -6.74 16 5 C 0.04 0.39 5.31 -2.30 -0.01 0.38 16 6 C -0.13 -1.06 7.08 -24.46 -0.17 -1.24 16 7 C -0.13 -1.35 6.45 -24.77 -0.16 -1.51 16 8 C 0.05 0.52 3.24 -67.88 -0.22 0.30 16 9 H 0.11 1.08 5.16 -51.93 -0.27 0.81 16 10 C 0.51 7.54 3.78 -10.98 -0.04 7.50 16 11 O -0.54 -9.83 13.28 5.55 0.07 -9.76 16 12 N -0.60 -8.63 1.94 -172.77 -0.34 -8.96 16 13 C 0.10 1.15 5.21 -3.71 -0.02 1.13 16 14 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 15 C -0.14 -2.29 5.47 -26.69 -0.15 -2.44 16 16 C 0.17 3.33 2.92 -67.81 -0.20 3.13 16 17 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 18 N -0.72 -17.90 5.12 -53.31 -0.27 -18.18 16 19 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 23 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.11 1.86 5.89 -3.72 -0.02 1.84 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.52 6.51 -51.93 -0.34 0.18 16 31 H 0.09 1.41 4.93 -51.94 -0.26 1.15 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.96 3.01 -51.93 -0.16 0.81 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.55 7.07 -51.93 -0.37 0.18 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.01 7.45 -51.93 -0.39 0.62 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.79 5.05 -51.93 -0.26 0.53 16 42 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.09 1.82 7.04 -51.93 -0.37 1.46 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -31.04 368.04 -9.85 -40.89 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.59 Total: 9.64 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.88 Total: -2.45 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.97 Total: -61.19 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.04 -9.85 -40.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999143753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.755 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds