Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00455 * 2 1 4 4 C 1.46906 * 110.99820 * 123.95796 * 2 1 3 5 5 H 1.09009 * 109.46633 * 299.99538 * 4 2 1 6 6 C 1.52995 * 109.47074 * 59.99440 * 4 2 1 7 7 C 1.53000 * 109.47011 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46917 * 300.00130 * 7 6 4 9 9 C 1.52995 * 109.47386 * 60.00100 * 8 7 6 10 10 H 1.08999 * 109.47593 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47400 * 59.99784 * 9 8 7 12 12 O 1.21282 * 120.00134 * 240.00615 * 11 9 8 13 13 N 1.34783 * 119.99786 * 59.99740 * 11 9 8 14 14 C 1.46500 * 119.99942 * 180.02562 * 13 11 9 15 15 H 1.08992 * 112.85003 * 23.80610 * 14 13 11 16 16 C 1.53780 * 113.61488 * 155.00784 * 14 13 11 17 17 C 1.53775 * 87.08390 * 89.19800 * 16 14 13 18 18 H 1.09006 * 113.61778 * 270.80301 * 17 16 14 19 19 N 1.46499 * 113.61462 * 139.98289 * 17 16 14 20 20 C 1.36935 * 119.99938 * 154.99826 * 19 17 16 21 21 H 1.08000 * 120.00518 * 359.72965 * 20 19 17 22 22 C 1.38817 * 119.99990 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99869 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47028 * 60.00888 * 24 22 20 26 26 H 1.48503 * 109.46851 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47412 * 300.00497 * 24 22 20 28 28 C 1.53784 * 87.08300 * 25.43287 * 17 16 14 29 29 C 1.52992 * 109.47165 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47462 * 296.04976 * 1 2 3 31 31 H 1.09008 * 109.46460 * 56.04438 * 1 2 3 32 32 H 1.08998 * 109.47923 * 176.04230 * 1 2 3 33 33 H 1.09000 * 109.47106 * 183.94791 * 3 2 1 34 34 H 1.08994 * 109.47330 * 303.95335 * 3 2 1 35 35 H 1.08999 * 109.47061 * 63.95312 * 3 2 1 36 36 H 1.08999 * 109.47593 * 300.00038 * 6 4 2 37 37 H 1.08999 * 109.47422 * 60.00571 * 6 4 2 38 38 H 1.08997 * 109.47711 * 59.99798 * 7 6 4 39 39 H 1.09002 * 109.47463 * 180.02562 * 7 6 4 40 40 H 1.08999 * 109.47014 * 299.99637 * 8 7 6 41 41 H 1.09004 * 109.47178 * 179.97438 * 8 7 6 42 42 H 0.96995 * 119.99889 * 0.02562 * 13 11 9 43 43 H 1.09005 * 113.61262 * 334.64830 * 16 14 13 44 44 H 1.08999 * 113.69144 * 203.75806 * 16 14 13 45 45 H 0.96999 * 119.99984 * 334.99761 * 19 17 16 46 46 H 0.96996 * 119.99743 * 179.97438 * 23 22 20 47 47 H 1.08996 * 113.60949 * 89.11592 * 28 17 16 48 48 H 1.09001 * 113.61595 * 220.01845 * 28 17 16 49 49 H 1.09004 * 109.47261 * 59.99894 * 29 4 2 50 50 H 1.08997 * 109.47264 * 299.99816 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 1.6459 -0.3201 2.0688 6 6 1.5047 -2.2125 1.0491 7 6 2.0524 -3.0102 2.2343 8 6 3.5819 -2.9876 2.2010 9 6 4.0726 -1.5411 2.2894 10 1 5.1622 -1.5249 2.2653 11 6 3.5890 -0.9243 3.5766 12 8 2.8763 0.0566 3.5488 13 7 3.9483 -1.4630 4.7587 14 6 3.4778 -0.8638 6.0100 15 1 2.5608 -0.2881 5.8849 16 6 3.4287 -1.8529 7.1864 17 6 4.8836 -1.4521 7.4819 18 1 5.6195 -2.0593 6.9547 19 7 5.1763 -1.3167 8.9109 20 6 6.4584 -1.4749 9.3651 21 1 7.2531 -1.7038 8.6705 22 6 6.7359 -1.3461 10.7192 23 7 5.7667 -1.0724 11.5664 24 14 8.4848 -1.5627 11.3388 25 1 9.3664 -0.5561 10.6947 26 1 8.5145 -1.3769 12.8119 27 1 8.9637 -2.9275 11.0027 28 6 4.5737 -0.1155 6.7872 29 6 3.5248 -0.7439 1.1034 30 1 -0.3634 0.4513 0.9233 31 1 -0.3632 0.5741 -0.8525 32 1 -0.3635 -1.0251 -0.0709 33 1 3.0828 1.3430 -0.0708 34 1 1.5899 1.9163 -0.8524 35 1 1.7045 1.8723 0.9233 36 1 0.4151 -2.2287 1.0733 37 1 1.8542 -2.6585 0.1180 38 1 1.7027 -2.5642 3.1653 39 1 1.7032 -4.0409 2.1711 40 1 3.9317 -3.4337 1.2700 41 1 3.9722 -3.5555 3.0456 42 1 4.5185 -2.2473 4.7809 43 1 3.3161 -2.8924 6.8784 44 1 2.7287 -1.5657 7.9711 45 1 4.4620 -1.1149 9.5353 46 1 5.9605 -0.9827 12.5126 47 1 4.1866 0.6478 7.4621 48 1 5.3855 0.2476 6.1569 49 1 3.8747 0.2866 1.1662 50 1 3.8739 -1.1900 0.1723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020928124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = -8.985594 kcal Electronic energy + Delta-G solvation = -26635.425871 eV Core-core repulsion = 23084.012440 eV Total energy + Delta-G solvation = -3551.413430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82189 -38.98765 -37.60698 -35.76510 -34.05394 -32.63036 -31.35277 -30.08119 -29.54392 -27.74014 -25.14124 -24.84625 -24.33106 -23.47664 -22.10184 -21.75258 -20.60509 -19.57884 -18.94378 -17.16421 -16.72680 -16.60093 -15.79948 -15.23203 -15.08133 -14.88104 -14.80623 -14.45708 -14.16987 -13.87241 -13.75786 -13.53256 -13.38245 -12.68903 -12.66400 -12.52875 -12.29737 -12.12524 -11.96650 -11.87323 -11.65473 -11.61588 -11.56715 -11.34424 -11.00895 -10.90581 -10.79612 -10.53442 -10.32074 -10.26250 -10.16778 -9.93078 -9.59878 -9.54153 -8.92490 -8.78368 -8.34920 -7.00560 -5.81915 -3.11039 2.68551 3.23960 3.40627 3.45251 3.46259 3.75343 4.44947 4.50166 4.55680 4.58061 4.86504 4.97351 5.01620 5.02322 5.07662 5.18198 5.20216 5.28717 5.29779 5.33632 5.43005 5.43750 5.47982 5.50205 5.53916 5.63232 5.70140 5.75251 5.81823 5.84984 5.87845 5.92431 5.97941 5.98014 6.04779 6.12173 6.23536 6.27908 6.30970 6.52430 6.62006 6.69009 6.91287 6.96634 7.07330 7.62532 7.64634 8.32521 8.36488 9.47591 10.04999 10.39327 11.40354 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.029800 B = 0.002535 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.384820 B =11042.250939 C =11164.985406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.023 3.977 4 C 0.070 3.930 5 H 0.077 0.923 6 C -0.112 4.112 7 C -0.122 4.122 8 C -0.110 4.110 9 C -0.109 4.109 10 H 0.099 0.901 11 C 0.520 3.480 12 O -0.541 6.541 13 N -0.706 5.706 14 C 0.116 3.884 15 H 0.093 0.907 16 C -0.159 4.159 17 C 0.167 3.833 18 H 0.073 0.927 19 N -0.712 5.712 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.176 4.176 29 C -0.091 4.091 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.399 0.601 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.386 0.614 46 H 0.257 0.743 47 H 0.084 0.916 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 -2.652 -24.175 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.268 5.268 3 C -0.125 4.125 4 C -0.038 4.038 5 H 0.095 0.905 6 C -0.150 4.150 7 C -0.160 4.160 8 C -0.148 4.148 9 C -0.131 4.131 10 H 0.117 0.883 11 C 0.307 3.693 12 O -0.419 6.419 13 N -0.356 5.356 14 C 0.010 3.990 15 H 0.111 0.889 16 C -0.199 4.199 17 C 0.055 3.945 18 H 0.091 0.909 19 N -0.350 5.350 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.218 4.218 29 C -0.129 4.129 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.234 0.766 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.220 0.780 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.608 -2.205 -24.531 26.091 hybrid contribution 0.776 0.077 1.433 1.631 sum -7.832 -2.128 -23.099 24.483 Atomic orbital electron populations 1.22397 0.87912 1.02042 1.00271 1.62043 1.07487 1.13691 1.43610 1.22389 1.00962 0.88885 1.00308 1.21989 0.94685 0.93765 0.93337 0.90534 1.21624 1.00147 0.94709 0.98513 1.21559 0.95167 1.00321 0.98931 1.21549 0.96282 0.94041 1.02942 1.21409 1.01866 0.96642 0.93194 0.88289 1.20549 0.80009 0.83683 0.85089 1.90612 1.37475 1.26477 1.87295 1.45751 1.52198 1.32322 1.05306 1.21789 0.98422 0.96407 0.82333 0.88863 1.23852 1.00957 0.98298 0.96828 1.21607 0.92628 0.93419 0.86833 0.90910 1.42394 1.07878 1.83464 1.01265 1.19242 0.85998 1.40918 0.91561 0.91188 1.24773 0.97573 1.02430 0.96057 1.69646 1.30798 1.55103 1.02434 0.86261 0.84267 0.77904 0.77707 1.21215 1.21648 1.21221 1.24297 0.97719 1.00822 0.98979 1.21403 0.94964 1.00240 0.96302 0.95709 0.91765 0.91287 0.91165 0.91953 0.95287 0.92113 0.91372 0.91887 0.91411 0.90594 0.91270 0.76627 0.91821 0.89148 0.78021 0.93355 0.89700 0.92506 0.91174 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.21 60.06 0.55 0.75 16 2 N -0.54 -5.61 4.89 -243.19 -1.19 -6.80 16 3 C 0.02 0.22 9.11 60.06 0.55 0.77 16 4 C 0.07 0.75 1.65 -67.72 -0.11 0.64 16 5 H 0.08 1.06 5.51 -51.92 -0.29 0.78 16 6 C -0.11 -1.02 4.97 -26.73 -0.13 -1.15 16 7 C -0.12 -1.06 5.70 -26.73 -0.15 -1.21 16 8 C -0.11 -0.85 5.35 -26.73 -0.14 -0.99 16 9 C -0.11 -1.02 3.01 -91.75 -0.28 -1.30 16 10 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 11 C 0.52 6.58 5.64 -10.98 -0.06 6.52 16 12 O -0.54 -8.69 13.26 5.56 0.07 -8.62 16 13 N -0.71 -8.69 5.16 -53.02 -0.27 -8.97 16 14 C 0.12 1.72 4.32 -67.12 -0.29 1.43 16 15 H 0.09 1.48 7.46 -51.93 -0.39 1.09 16 16 C -0.16 -2.48 7.58 -25.92 -0.20 -2.68 16 17 C 0.17 3.17 4.36 -67.12 -0.29 2.87 16 18 H 0.07 1.34 8.10 -51.93 -0.42 0.91 16 19 N -0.71 -17.48 5.40 -52.64 -0.28 -17.77 16 20 C -0.25 -6.72 9.97 -15.06 -0.15 -6.87 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 24 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 C -0.18 -3.08 7.68 -25.91 -0.20 -3.28 16 29 C -0.09 -0.90 4.01 -26.71 -0.11 -1.01 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.50 8.12 -51.92 -0.42 0.08 16 32 H 0.07 0.57 6.30 -51.93 -0.33 0.24 16 33 H 0.07 0.66 6.24 -51.93 -0.32 0.34 16 34 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.55 6.40 -51.93 -0.33 0.21 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.67 7.22 -51.93 -0.37 0.30 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 42 H 0.40 4.12 8.12 -40.82 -0.33 3.79 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 45 H 0.39 10.08 7.92 -40.82 -0.32 9.75 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.07 0.77 6.30 -51.93 -0.33 0.44 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -31.26 379.76 -10.22 -41.48 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.87 Total: 10.96 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.11 Total: -5.95 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -1.02 Total: -60.69 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.26 -10.22 -41.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020928124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.496 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds