Wall clock time and date at job start Tue Mar 31 2020 05:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 C 1.46902 * 110.99573 * 123.95366 * 2 1 3 5 5 H 1.08990 * 109.47358 * 299.99539 * 4 2 1 6 6 C 1.52995 * 109.47407 * 60.00340 * 4 2 1 7 7 C 1.53004 * 109.47530 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.46680 * 299.99714 * 7 6 4 9 9 C 1.52998 * 109.47258 * 59.99914 * 8 7 6 10 10 H 1.09001 * 109.47204 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47225 * 59.99830 * 9 8 7 12 12 O 1.21284 * 120.00004 * 240.00285 * 11 9 8 13 13 N 1.34772 * 120.00335 * 59.99818 * 11 9 8 14 14 C 1.46507 * 120.00435 * 180.02562 * 13 11 9 15 15 H 1.08998 * 112.84814 * 25.33577 * 14 13 11 16 16 C 1.53780 * 113.61272 * 156.53109 * 14 13 11 17 17 C 1.53781 * 87.07962 * 139.98157 * 16 14 13 18 18 H 1.09002 * 113.61564 * 89.19935 * 17 16 14 19 19 N 1.46502 * 113.61416 * 220.01667 * 17 16 14 20 20 C 1.36935 * 119.99967 * 204.99656 * 19 17 16 21 21 H 1.08006 * 120.00143 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00186 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00219 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99890 * 359.97438 * 22 20 19 25 25 H 1.48510 * 109.46666 * 89.99949 * 24 22 20 26 26 H 1.48494 * 109.47381 * 210.00152 * 24 22 20 27 27 H 1.48499 * 109.47172 * 330.00726 * 24 22 20 28 28 C 1.53785 * 113.61311 * 254.13923 * 14 13 11 29 29 C 1.53004 * 109.47345 * 299.99678 * 9 8 7 30 30 H 1.09001 * 109.46544 * 60.00058 * 1 2 3 31 31 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47033 * 300.00113 * 1 2 3 33 33 H 1.08997 * 109.47009 * 63.95787 * 3 2 1 34 34 H 1.09005 * 109.46772 * 183.95248 * 3 2 1 35 35 H 1.08996 * 109.47125 * 303.94834 * 3 2 1 36 36 H 1.09001 * 109.46892 * 299.99943 * 6 4 2 37 37 H 1.09003 * 109.47841 * 59.99225 * 6 4 2 38 38 H 1.08994 * 109.46912 * 59.99695 * 7 6 4 39 39 H 1.08996 * 109.47018 * 180.02562 * 7 6 4 40 40 H 1.08999 * 109.47089 * 179.97438 * 8 7 6 41 41 H 1.09002 * 109.47288 * 299.99902 * 8 7 6 42 42 H 0.97009 * 119.99908 * 0.02562 * 13 11 9 43 43 H 1.08997 * 113.61435 * 254.52699 * 16 14 13 44 44 H 1.09005 * 113.61518 * 25.43553 * 16 14 13 45 45 H 0.96998 * 119.99948 * 25.00639 * 19 17 16 46 46 H 0.97004 * 120.00129 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.61159 * 334.56377 * 28 14 13 48 48 H 1.08996 * 113.61030 * 105.47147 * 28 14 13 49 49 H 1.09006 * 109.46807 * 300.00321 * 29 9 8 50 50 H 1.08995 * 109.47458 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6460 -0.3201 2.0687 6 6 1.5049 -2.2125 1.0492 7 6 2.0536 -3.0105 2.2338 8 6 3.5830 -2.9877 2.1993 9 6 4.0736 -1.5412 2.2877 10 1 5.1632 -1.5249 2.2626 11 6 3.5910 -0.9248 3.5753 12 8 2.8782 0.0561 3.5483 13 7 3.9513 -1.4636 4.7570 14 6 3.4815 -0.8647 6.0088 15 1 2.5501 -0.3112 5.8899 16 6 3.4688 -1.8448 7.1938 17 6 3.9886 -0.6838 8.0580 18 1 3.1963 -0.0807 8.5013 19 7 5.0084 -1.0864 9.0296 20 6 5.1962 -0.3512 10.1695 21 1 4.5921 0.5253 10.3524 22 6 6.1628 -0.7323 11.0899 23 7 6.3429 -0.0259 12.1858 24 14 7.2071 -2.2486 10.7739 25 1 8.4291 -1.8606 10.0245 26 1 7.5948 -2.8615 12.0697 27 1 6.4276 -3.2290 9.9761 28 6 4.5698 -0.0841 6.7646 29 6 3.5249 -0.7432 1.1031 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7045 1.8723 0.9233 34 1 3.0828 1.3432 -0.0708 35 1 1.5899 1.9163 -0.8525 36 1 0.4153 -2.2287 1.0733 37 1 1.8543 -2.6585 0.1180 38 1 1.7045 -2.5647 3.1651 39 1 1.7045 -4.0411 2.1705 40 1 3.9740 -3.5558 3.0434 41 1 3.9322 -3.4335 1.2679 42 1 4.5216 -2.2480 4.7786 43 1 2.4699 -2.1820 7.4707 44 1 4.1798 -2.6645 7.0902 45 1 5.5508 -1.8737 8.8655 46 1 7.0187 -0.2920 12.8288 47 1 5.5824 -0.4216 6.5435 48 1 4.4585 0.9980 6.6955 49 1 3.8741 -1.1891 0.1717 50 1 3.8740 0.2874 1.1663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022975862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:52 Heat of formation + Delta-G solvation = -6.208926 kcal Electronic energy + Delta-G solvation = -26614.079053 eV Core-core repulsion = 23062.786028 eV Total energy + Delta-G solvation = -3551.293025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84871 -39.00283 -37.70800 -35.80702 -34.22985 -32.75816 -31.42472 -30.52195 -29.75307 -27.77702 -25.27017 -24.99435 -24.36383 -23.37167 -21.99765 -21.39407 -20.49350 -20.01342 -19.16674 -17.48327 -16.80031 -16.58421 -16.23580 -15.29520 -15.06458 -14.92618 -14.77105 -14.51777 -14.34432 -13.99355 -13.74723 -13.59544 -13.24618 -12.75753 -12.69814 -12.55476 -12.38654 -12.19724 -12.08426 -12.00965 -11.80436 -11.65540 -11.59622 -11.40692 -11.13732 -11.00349 -10.79981 -10.58014 -10.45803 -10.31615 -10.20858 -10.16853 -9.66132 -9.52061 -8.97806 -8.83244 -8.37950 -7.32127 -5.82181 -3.18404 2.63627 3.22185 3.32014 3.34455 3.40845 3.72326 4.40111 4.44968 4.53094 4.53402 4.79702 4.90006 4.94333 4.97928 5.03453 5.09284 5.13520 5.19988 5.24791 5.25819 5.29750 5.38371 5.40516 5.45852 5.50829 5.57625 5.59763 5.67131 5.72077 5.73127 5.78046 5.84836 5.92650 5.93788 5.98905 6.01680 6.07160 6.15325 6.22531 6.38379 6.50580 6.63127 6.88430 6.91812 6.93758 7.56712 7.93862 8.26638 8.37256 9.14408 9.86693 10.06060 11.35961 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.028062 B = 0.002665 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.560375 B =10505.813527 C =10878.063391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.544 5.544 3 C 0.023 3.977 4 C 0.070 3.930 5 H 0.077 0.923 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.110 4.110 9 C -0.110 4.110 10 H 0.098 0.902 11 C 0.518 3.482 12 O -0.540 6.540 13 N -0.715 5.715 14 C 0.119 3.881 15 H 0.109 0.891 16 C -0.161 4.161 17 C 0.175 3.825 18 H 0.087 0.913 19 N -0.734 5.734 20 C -0.249 4.249 21 H 0.092 0.908 22 C 0.005 3.995 23 N -0.932 5.932 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.176 4.176 29 C -0.091 4.091 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.398 0.602 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 -6.157 -26.602 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.125 4.125 4 C -0.038 4.038 5 H 0.095 0.905 6 C -0.150 4.150 7 C -0.160 4.160 8 C -0.148 4.148 9 C -0.132 4.132 10 H 0.116 0.884 11 C 0.305 3.695 12 O -0.418 6.418 13 N -0.364 5.364 14 C 0.014 3.986 15 H 0.127 0.873 16 C -0.201 4.201 17 C 0.063 3.937 18 H 0.105 0.895 19 N -0.374 5.374 20 C -0.379 4.379 21 H 0.110 0.890 22 C -0.191 4.191 23 N -0.579 5.579 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.218 4.218 29 C -0.129 4.129 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.232 0.768 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.886 -5.496 -26.804 28.769 hybrid contribution 0.957 -1.020 0.654 1.544 sum -7.929 -6.516 -26.150 28.092 Atomic orbital electron populations 1.22413 0.87892 1.01984 1.00420 1.62048 1.07511 1.13725 1.43551 1.22391 1.00946 0.88856 1.00352 1.21977 0.94662 0.93737 0.93395 0.90544 1.21635 1.00173 0.94729 0.98500 1.21555 0.95129 1.00311 0.98960 1.21541 0.96312 0.94053 1.02852 1.21410 1.01799 0.96629 0.93361 0.88398 1.20575 0.80012 0.83719 0.85222 1.90617 1.37431 1.26414 1.87329 1.46086 1.52174 1.32423 1.05764 1.22441 0.98997 0.96228 0.80886 0.87313 1.23873 1.01768 0.98612 0.95877 1.21363 0.91701 0.93414 0.87238 0.89465 1.42699 1.41064 1.31524 1.22105 1.19144 1.16341 1.07312 0.95104 0.89046 1.24704 0.99249 0.98591 0.96562 1.69703 1.36581 1.40524 1.11100 0.86542 0.80909 0.83833 0.77163 1.21075 1.21666 1.20357 1.24317 0.98486 1.00149 0.98852 1.21399 0.94986 1.00245 0.96295 0.91718 0.91252 0.95690 0.95247 0.91176 0.91925 0.92046 0.91371 0.91895 0.91434 0.91400 0.90622 0.76817 0.91216 0.90231 0.80494 0.92982 0.90369 0.91859 0.90794 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 60.07 0.56 0.75 16 2 N -0.54 -5.49 4.89 -243.18 -1.19 -6.68 16 3 C 0.02 0.22 9.11 60.06 0.55 0.77 16 4 C 0.07 0.73 1.65 -67.71 -0.11 0.62 16 5 H 0.08 1.03 5.51 -51.93 -0.29 0.75 16 6 C -0.11 -0.99 4.98 -26.73 -0.13 -1.12 16 7 C -0.12 -1.00 5.70 -26.73 -0.15 -1.15 16 8 C -0.11 -0.79 5.36 -26.73 -0.14 -0.93 16 9 C -0.11 -0.98 3.01 -91.77 -0.28 -1.26 16 10 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 11 C 0.52 6.26 5.64 -10.99 -0.06 6.19 16 12 O -0.54 -8.40 13.28 5.55 0.07 -8.33 16 13 N -0.71 -8.19 5.25 -53.01 -0.28 -8.47 16 14 C 0.12 1.65 4.21 -67.11 -0.28 1.36 16 15 H 0.11 1.61 7.50 -51.93 -0.39 1.22 16 16 C -0.16 -2.31 7.58 -25.92 -0.20 -2.51 16 17 C 0.17 3.21 4.48 -67.02 -0.30 2.91 16 18 H 0.09 1.65 8.10 -51.93 -0.42 1.22 16 19 N -0.73 -16.83 5.21 -52.54 -0.27 -17.10 16 20 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 21 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16 24 Si 0.89 21.65 27.74 -169.99 -4.71 16.94 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 28 C -0.18 -2.89 7.69 -25.82 -0.20 -3.09 16 29 C -0.09 -0.87 4.01 -26.72 -0.11 -0.98 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.56 6.10 -51.93 -0.32 0.24 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.65 6.23 -51.93 -0.32 0.33 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.64 7.22 -51.93 -0.37 0.26 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.40 3.67 8.13 -40.82 -0.33 3.34 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 45 H 0.36 8.07 5.79 -40.82 -0.24 7.83 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 47 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.75 6.30 -51.93 -0.33 0.43 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -32.20 376.67 -9.85 -42.05 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.81 Total: 9.64 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.11 Total: -5.48 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.97 Total: -60.50 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.07 Total: -8.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.20 -9.85 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022975862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.840 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds