Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46909 * 110.99366 * 2 1 4 4 C 1.46896 * 111.00306 * 123.95101 * 2 1 3 5 5 H 1.09000 * 109.46698 * 55.00419 * 4 2 1 6 6 C 1.52997 * 109.47244 * 295.00582 * 4 2 1 7 7 C 1.53006 * 109.47164 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46626 * 59.99702 * 7 6 4 9 9 C 1.52997 * 109.47592 * 300.00035 * 8 7 6 10 10 H 1.09000 * 109.47140 * 300.00346 * 9 8 7 11 11 C 1.50699 * 109.47265 * 180.02562 * 9 8 7 12 12 O 1.21282 * 120.00041 * 240.00247 * 11 9 8 13 13 N 1.34779 * 120.00033 * 60.00305 * 11 9 8 14 14 C 1.46500 * 120.00165 * 179.97438 * 13 11 9 15 15 H 1.08995 * 112.85197 * 334.66840 * 14 13 11 16 16 C 1.53784 * 113.61402 * 105.85869 * 14 13 11 17 17 C 1.54055 * 86.98507 * 89.16209 * 16 14 13 18 18 H 1.08998 * 113.61775 * 139.97360 * 17 16 14 19 19 N 1.46496 * 113.69116 * 270.87405 * 17 16 14 20 20 C 1.36935 * 120.00168 * 252.53104 * 19 17 16 21 21 H 1.08004 * 119.99758 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00327 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99919 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00167 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47139 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47048 * 119.99602 * 24 22 20 27 27 H 1.48499 * 109.47264 * 239.99562 * 24 22 20 28 28 C 1.53781 * 87.07665 * 25.43197 * 17 16 14 29 29 C 1.52996 * 109.47165 * 60.00300 * 9 8 7 30 30 H 1.08996 * 109.47384 * 296.04354 * 1 2 3 31 31 H 1.09002 * 109.46891 * 56.04623 * 1 2 3 32 32 H 1.08999 * 109.46509 * 176.04247 * 1 2 3 33 33 H 1.09006 * 109.46589 * 183.95362 * 3 2 1 34 34 H 1.08998 * 109.47210 * 303.95555 * 3 2 1 35 35 H 1.08997 * 109.47158 * 63.95781 * 3 2 1 36 36 H 1.09001 * 109.46922 * 59.99866 * 6 4 2 37 37 H 1.09000 * 109.47140 * 299.99566 * 6 4 2 38 38 H 1.08993 * 109.46955 * 180.02562 * 7 6 4 39 39 H 1.09000 * 109.47050 * 300.00004 * 7 6 4 40 40 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 41 41 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 42 42 H 0.96996 * 119.99850 * 359.97438 * 13 11 9 43 43 H 1.08999 * 113.61718 * 203.66501 * 16 14 13 44 44 H 1.08996 * 113.61547 * 334.57313 * 16 14 13 45 45 H 0.97007 * 119.99917 * 72.52670 * 19 17 16 46 46 H 0.97003 * 120.00070 * 180.02562 * 23 22 20 47 47 H 1.09006 * 113.61744 * 220.02812 * 28 17 16 48 48 H 1.08998 * 113.69687 * 89.12812 * 28 17 16 49 49 H 1.08992 * 109.47534 * 180.02562 * 29 9 8 50 50 H 1.08996 * 109.47134 * 59.99508 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.9956 -0.7659 1.1376 5 1 1.5755 -1.7716 1.1239 6 6 1.6091 -0.0695 2.4439 7 6 2.1570 -0.8676 3.6288 8 6 3.6813 -0.9505 3.5265 9 6 4.0677 -1.6470 2.2202 10 1 3.6474 -2.6526 2.2064 11 6 5.5691 -1.7292 2.1198 12 8 6.1447 -1.2012 1.1919 13 7 6.2723 -2.3896 3.0611 14 6 7.7318 -2.4700 2.9632 15 1 8.0935 -2.3710 1.9398 16 6 8.4673 -1.5659 3.9666 17 6 8.4145 -2.7513 4.9491 18 1 9.3285 -2.8786 5.5292 19 7 7.2067 -2.7757 5.7777 20 6 7.2821 -2.4580 7.1076 21 1 8.2321 -2.1897 7.5456 22 6 6.1377 -2.4816 7.8928 23 7 4.9799 -2.8090 7.3591 24 14 6.2407 -2.0488 9.7071 25 1 7.6455 -1.7199 10.0585 26 1 5.3727 -0.8767 9.9864 27 1 5.7859 -3.2062 10.5187 28 6 8.3347 -3.6675 3.7166 29 6 3.5199 -0.8489 1.0353 30 1 -0.3634 0.4512 0.9233 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3632 -1.0252 -0.0709 33 1 3.0828 1.3434 -0.0709 34 1 1.5897 1.9164 -0.8524 35 1 1.7043 1.8724 0.9233 36 1 0.5232 -0.0107 2.5168 37 1 2.0292 0.9363 2.4575 38 1 1.8813 -0.3717 4.5594 39 1 1.7366 -1.8732 3.6150 40 1 4.1017 0.0550 3.5403 41 1 4.0716 -1.5195 4.3704 42 1 5.8120 -2.8115 3.8033 43 1 9.4779 -1.3008 3.6561 44 1 7.8824 -0.7042 4.2881 45 1 6.3534 -3.0169 5.3843 46 1 4.1802 -2.8251 7.9078 47 1 7.6427 -4.5012 3.8363 48 1 9.3084 -3.9768 3.3369 49 1 3.7948 -1.3452 0.1047 50 1 3.9402 0.1567 1.0492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022975863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = -8.880071 kcal Electronic energy + Delta-G solvation = -27210.266617 eV Core-core repulsion = 23658.857763 eV Total energy + Delta-G solvation = -3551.408854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31101 -39.16891 -37.76695 -35.45579 -33.64609 -32.56332 -30.89838 -29.98145 -29.41500 -27.73437 -25.11687 -24.78896 -24.40122 -23.62263 -22.08928 -21.39787 -19.82387 -19.36150 -18.85535 -17.43149 -16.77155 -15.93624 -15.33738 -15.20473 -14.85688 -14.77152 -14.62716 -14.48393 -14.31685 -13.82613 -13.68467 -13.31453 -13.07218 -12.95215 -12.40927 -12.25456 -12.13949 -12.03322 -11.88251 -11.80412 -11.71755 -11.44879 -11.22256 -10.94835 -10.89347 -10.83071 -10.50274 -10.38885 -10.24840 -10.21489 -10.14968 -9.88353 -9.59396 -9.28361 -8.96689 -8.49050 -8.33637 -7.09663 -5.90663 -3.18761 3.00806 3.36265 3.43151 3.44419 3.50996 3.90619 4.49017 4.67805 4.76311 4.93283 5.06092 5.08045 5.11072 5.19748 5.25601 5.28824 5.33575 5.39463 5.41139 5.42718 5.52648 5.53283 5.57176 5.59555 5.70206 5.76309 5.84440 5.87522 5.95032 6.07073 6.09239 6.11687 6.14383 6.24325 6.28283 6.32689 6.38996 6.48785 6.54279 6.59197 6.71373 6.84618 6.94496 6.97921 7.16255 7.63178 7.97704 8.29164 8.64608 9.39825 9.94192 10.27958 11.32132 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.004032 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.599597 B = 6942.475350 C = 8524.193497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.540 5.540 3 C 0.015 3.985 4 C 0.084 3.916 5 H 0.082 0.918 6 C -0.154 4.154 7 C -0.109 4.109 8 C -0.113 4.113 9 C -0.103 4.103 10 H 0.095 0.905 11 C 0.521 3.479 12 O -0.554 6.554 13 N -0.700 5.700 14 C 0.123 3.877 15 H 0.089 0.911 16 C -0.187 4.187 17 C 0.164 3.836 18 H 0.065 0.935 19 N -0.704 5.704 20 C -0.241 4.241 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.168 4.168 29 C -0.087 4.087 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.407 0.593 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.378 0.622 46 H 0.256 0.744 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 3.055 -12.214 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.133 4.133 4 C -0.024 4.024 5 H 0.100 0.900 6 C -0.193 4.193 7 C -0.147 4.147 8 C -0.151 4.151 9 C -0.125 4.125 10 H 0.113 0.887 11 C 0.308 3.692 12 O -0.432 6.432 13 N -0.353 5.353 14 C 0.018 3.982 15 H 0.107 0.893 16 C -0.229 4.229 17 C 0.052 3.948 18 H 0.084 0.916 19 N -0.344 5.344 20 C -0.372 4.372 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.208 4.208 29 C -0.125 4.125 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.246 0.754 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.214 0.786 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.585 3.228 -13.109 14.610 hybrid contribution -0.825 0.434 2.043 2.245 sum -6.410 3.662 -11.067 13.303 Atomic orbital electron populations 1.22398 0.87785 1.02119 1.00386 1.62234 1.07533 1.14032 1.42455 1.22493 1.01519 0.88997 1.00266 1.21771 0.95608 0.97465 0.87568 0.89951 1.22260 1.00475 1.00391 0.96173 1.21394 0.95297 1.00414 0.97567 1.21560 0.96107 1.01364 0.96093 1.21291 0.91967 1.01726 0.97548 0.88704 1.20560 0.89560 0.77560 0.81550 1.90639 1.72083 1.46667 1.33822 1.45897 1.06901 1.55188 1.27286 1.21746 0.80000 0.97547 0.98943 0.89316 1.24316 0.99432 1.00207 0.98927 1.21250 0.91685 0.92171 0.89670 0.91643 1.42213 1.04379 1.81094 1.06728 1.19330 0.94342 1.38537 0.85006 0.90850 1.24708 0.95451 1.02150 0.98270 1.69618 0.98334 1.54845 1.35265 0.86105 0.77294 0.77573 0.85122 1.20543 1.21864 1.21832 1.23856 1.00954 0.97261 0.98702 1.21340 0.92809 1.01055 0.97317 0.95312 0.91685 0.91493 0.90732 0.91832 0.95163 0.92119 0.91662 0.91476 0.91673 0.91814 0.89345 0.75445 0.90580 0.91174 0.78604 0.93437 0.91143 0.89233 0.90697 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.31 60.07 0.56 0.75 16 2 N -0.54 -5.96 5.01 -243.17 -1.22 -7.17 16 3 C 0.02 0.16 8.82 60.07 0.53 0.69 16 4 C 0.08 0.97 2.23 -67.72 -0.15 0.81 16 5 H 0.08 0.93 8.13 -51.93 -0.42 0.50 16 6 C -0.15 -1.73 4.51 -26.73 -0.12 -1.85 16 7 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 8 C -0.11 -1.67 5.10 -26.73 -0.14 -1.80 16 9 C -0.10 -1.46 2.52 -91.78 -0.23 -1.70 16 10 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 11 C 0.52 8.93 7.15 -10.99 -0.08 8.85 16 12 O -0.55 -10.95 15.60 5.56 0.09 -10.86 16 13 N -0.70 -12.02 5.01 -53.02 -0.27 -12.29 16 14 C 0.12 2.08 4.30 -67.12 -0.29 1.79 16 15 H 0.09 1.50 7.50 -51.93 -0.39 1.11 16 16 C -0.19 -3.31 7.70 -25.77 -0.20 -3.51 16 17 C 0.16 3.13 4.57 -66.98 -0.31 2.83 16 18 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 19 N -0.70 -16.33 5.18 -52.50 -0.27 -16.60 16 20 C -0.24 -6.32 9.97 -15.06 -0.15 -6.47 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.93 -25.71 13.06 55.49 0.72 -24.98 16 24 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 C -0.17 -2.67 7.58 -25.92 -0.20 -2.87 16 29 C -0.09 -1.16 3.57 -26.73 -0.10 -1.26 16 30 H 0.03 0.25 6.44 -51.93 -0.33 -0.08 16 31 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.83 6.33 -51.93 -0.33 0.51 16 34 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.03 0.30 6.28 -51.93 -0.33 -0.02 16 36 H 0.06 0.63 6.52 -51.93 -0.34 0.29 16 37 H 0.06 0.77 6.39 -51.93 -0.33 0.44 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.53 7.56 -51.93 -0.39 1.14 16 42 H 0.41 7.28 5.59 -40.82 -0.23 7.05 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.38 8.92 5.35 -40.82 -0.22 8.70 16 46 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 50 H 0.07 1.02 6.39 -51.93 -0.33 0.68 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -28.89 377.81 -10.07 -38.96 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -8.68 Total: 16.46 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.12 Total: -5.61 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -1.03 Total: -61.05 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.89 -10.07 -38.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022975863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.077 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds