Wall clock time and date at job start Tue Mar 31 2020 04:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46977 * 2 1 4 4 N 1.46899 * 109.47467 * 120.00005 * 2 1 3 5 5 C 1.47842 * 110.99527 * 47.83519 * 4 2 1 6 6 C 1.54910 * 104.79734 * 146.36100 * 5 4 2 7 7 C 1.55136 * 101.65059 * 322.93010 * 6 5 4 8 8 C 1.47449 * 110.99984 * 168.67195 * 4 2 1 9 9 H 1.08995 * 109.88310 * 117.17893 * 8 4 2 10 10 C 1.50694 * 109.88725 * 356.15515 * 8 4 2 11 11 O 1.21284 * 120.00449 * 296.94971 * 10 8 4 12 12 N 1.34779 * 120.00265 * 116.95305 * 10 8 4 13 13 C 1.46496 * 120.00248 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47153 * 179.97438 * 13 12 10 15 15 H 1.09003 * 110.77506 * 56.78608 * 14 13 12 16 16 C 1.55402 * 110.85223 * 180.08473 * 14 13 12 17 17 C 1.54909 * 101.66453 * 153.70335 * 16 14 13 18 18 N 1.47430 * 104.83252 * 323.07291 * 17 16 14 19 19 C 1.36933 * 125.65200 * 204.16354 * 18 17 16 20 20 H 1.08001 * 120.00302 * 179.97438 * 19 18 17 21 21 C 1.38815 * 119.99929 * 359.96362 * 19 18 17 22 22 N 1.31624 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47164 * 89.99732 * 23 21 19 25 25 H 1.48497 * 109.47463 * 209.99856 * 23 21 19 26 26 H 1.48496 * 109.47244 * 329.99934 * 23 21 19 27 27 C 1.47023 * 108.70071 * 24.13261 * 18 17 16 28 28 H 1.09002 * 109.46573 * 299.99541 * 1 2 3 29 29 H 1.08996 * 109.47120 * 59.99509 * 1 2 3 30 30 H 1.08993 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47064 * 240.00584 * 2 1 3 32 32 H 1.08994 * 109.47521 * 305.67447 * 3 2 1 33 33 H 1.09003 * 109.46940 * 65.67885 * 3 2 1 34 34 H 1.09004 * 109.46851 * 185.67172 * 3 2 1 35 35 H 1.08998 * 110.37381 * 265.18997 * 5 4 2 36 36 H 1.08999 * 110.38153 * 27.53287 * 5 4 2 37 37 H 1.09005 * 110.98596 * 81.01988 * 6 5 4 38 38 H 1.09001 * 110.99220 * 204.79647 * 6 5 4 39 39 H 1.08998 * 110.70447 * 277.26370 * 7 6 5 40 40 H 1.09003 * 110.70754 * 154.03573 * 7 6 5 41 41 H 0.96997 * 119.99857 * 359.97438 * 12 10 8 42 42 H 1.08996 * 109.47174 * 60.00228 * 13 12 10 43 43 H 1.09005 * 109.47353 * 300.00179 * 13 12 10 44 44 H 1.08992 * 110.89224 * 35.63118 * 16 14 13 45 45 H 1.09005 * 111.04064 * 271.83358 * 16 14 13 46 46 H 1.09007 * 110.36782 * 204.23739 * 17 16 14 47 47 H 1.08996 * 110.37308 * 81.91591 * 17 16 14 48 48 H 0.96994 * 119.99849 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.88524 * 118.35483 * 27 18 17 50 50 H 1.09007 * 109.88132 * 239.37158 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.3228 -1.9826 1.3879 6 6 2.3870 -2.9197 2.0118 7 6 3.6732 -2.4715 1.2691 8 6 3.4685 -0.9507 1.1059 9 1 3.9921 -0.4165 1.8986 10 6 3.9828 -0.5055 -0.2387 11 8 3.5770 -1.0380 -1.2500 12 7 4.8939 0.4846 -0.3176 13 6 5.3944 0.9171 -1.6247 14 6 6.4096 2.0458 -1.4342 15 1 7.2234 1.7279 -0.7824 16 6 6.9606 2.5312 -2.8038 17 6 7.3581 3.9932 -2.4810 18 7 6.3187 4.4703 -1.5506 19 6 5.9662 5.7783 -1.3503 20 1 5.1882 6.0257 -0.6434 21 6 6.6091 6.7862 -2.0559 22 7 7.5579 6.4847 -2.9170 23 14 6.1278 8.5704 -1.7833 24 1 6.9563 9.1457 -0.6934 25 1 6.3509 9.3399 -3.0335 26 1 4.6934 8.6441 -1.4061 27 6 5.7229 3.3091 -0.8738 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.5961 1.9849 -0.8347 33 1 1.7620 1.9262 0.9365 34 1 3.1253 1.4442 -0.1016 35 1 0.4785 -1.8622 2.0666 36 1 0.9865 -2.3761 0.4286 37 1 2.4762 -2.7494 3.0847 38 1 2.1583 -3.9646 1.8020 39 1 3.7454 -2.9573 0.2960 40 1 4.5579 -2.6789 1.8710 41 1 5.2183 0.9108 0.4911 42 1 4.5630 1.2754 -2.2317 43 1 5.8746 0.0767 -2.1262 44 1 6.1851 2.4970 -3.5689 45 1 7.8304 1.9473 -3.1049 46 1 7.3593 4.5955 -3.3896 47 1 8.3375 4.0236 -2.0036 48 1 8.0073 7.1890 -3.4096 49 1 5.8936 3.3781 0.2005 50 1 4.6527 3.2703 -1.0773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028537814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:08 Heat of formation + Delta-G solvation = 4.300860 kcal Electronic energy + Delta-G solvation = -27225.609939 eV Core-core repulsion = 23674.772652 eV Total energy + Delta-G solvation = -3550.837286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13269 -38.36323 -37.36738 -34.74176 -34.57045 -32.57379 -30.50690 -29.54351 -29.28379 -28.12533 -26.93517 -25.60664 -23.88755 -22.51444 -21.53853 -20.96935 -20.32799 -19.85360 -19.21969 -17.22807 -16.86117 -16.74946 -16.19718 -15.58778 -15.32263 -14.86350 -14.63772 -14.17600 -13.83554 -13.70294 -13.57078 -13.27971 -12.78632 -12.52450 -12.50781 -12.24308 -12.13714 -11.92408 -11.78600 -11.73720 -11.53745 -11.38946 -11.29750 -11.05260 -10.98411 -10.91079 -10.85026 -10.79951 -10.47760 -10.16481 -10.03523 -9.98341 -9.79627 -9.53163 -8.94763 -8.65952 -8.29204 -6.84505 -5.66437 -3.08047 2.45620 3.16884 3.39464 3.44578 3.46528 3.77850 4.27769 4.40653 4.47879 4.64301 4.86563 4.99497 5.03875 5.10684 5.11629 5.21289 5.23544 5.37863 5.44503 5.48043 5.51078 5.55112 5.59887 5.67265 5.69234 5.71189 5.84075 5.85928 5.90118 5.92172 5.96803 6.04306 6.08269 6.16423 6.31839 6.37051 6.43805 6.54091 6.56490 6.69712 6.74220 6.89136 6.91289 7.47419 7.49879 7.61893 7.84309 8.15120 8.35296 9.21218 9.82203 10.46850 11.37593 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.003192 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.594780 B = 8769.781529 C = 9546.239728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.030 3.970 3 C -0.161 4.161 4 N -0.498 5.498 5 C 0.040 3.960 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.053 3.947 9 H 0.100 0.900 10 C 0.508 3.492 11 O -0.541 6.541 12 N -0.720 5.720 13 C 0.131 3.869 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.142 3.858 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.403 0.597 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.012 0.988 48 H 0.252 0.748 49 H 0.017 0.983 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.667 -18.431 8.451 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.219 4.219 4 N -0.224 5.224 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.167 4.167 8 C -0.059 4.059 9 H 0.118 0.882 10 C 0.294 3.706 11 O -0.419 6.419 12 N -0.371 5.371 13 C 0.008 3.992 14 C -0.134 4.134 15 H 0.094 0.906 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.330 5.330 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.016 3.984 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.238 0.762 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.125 0.875 47 H 0.030 0.970 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.002 -18.239 8.048 21.873 hybrid contribution 0.147 0.776 -0.060 0.792 sum -8.855 -17.462 7.988 21.146 Atomic orbital electron populations 1.21899 0.94576 1.01581 1.02140 1.22588 0.95815 0.96040 0.93281 1.22167 1.02916 0.94660 1.02119 1.64187 1.00560 1.20090 1.37597 1.23105 0.97309 0.88361 0.99980 1.22700 0.94232 0.99290 1.00297 1.22755 0.99048 0.93030 1.01907 1.22623 0.91304 0.97391 0.94547 0.88198 1.20876 0.78754 0.79325 0.91622 1.90596 1.57302 1.56241 1.37733 1.46312 1.43165 1.37068 1.10589 1.21457 0.97092 0.96605 0.84075 1.22487 0.97059 0.94279 0.99625 0.90585 1.23050 0.99678 1.00021 0.94664 1.21933 0.89811 0.88755 0.96786 1.44495 1.41353 1.01020 1.46127 1.19076 1.15783 0.80990 1.19233 0.90530 1.24788 0.98534 0.98153 0.99215 1.69794 1.27155 1.30695 1.29475 0.86074 0.77901 0.84493 0.77055 1.21633 1.21644 1.20678 1.21313 0.95556 0.86689 0.94841 0.92206 0.92186 0.92796 0.89235 0.92253 0.92078 0.91018 0.89921 0.93008 0.90440 0.90572 0.90204 0.90200 0.76189 0.91251 0.91702 0.91906 0.92154 0.87534 0.97022 0.93731 0.96479 0.95783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.83 37.16 0.33 -1.21 16 2 C 0.03 0.38 2.11 -67.71 -0.14 0.23 16 3 C -0.16 -2.14 8.97 37.16 0.33 -1.81 16 4 N -0.50 -5.55 5.03 -216.81 -1.09 -6.64 16 5 C 0.04 0.37 5.30 -2.30 -0.01 0.36 16 6 C -0.13 -0.98 7.08 -24.59 -0.17 -1.15 16 7 C -0.13 -1.16 6.43 -24.91 -0.16 -1.32 16 8 C 0.05 0.56 3.63 -67.88 -0.25 0.31 16 9 H 0.10 0.93 7.94 -51.93 -0.41 0.52 16 10 C 0.51 6.61 3.93 -10.99 -0.04 6.57 16 11 O -0.54 -8.74 13.84 5.55 0.08 -8.66 16 12 N -0.72 -8.97 3.67 -60.30 -0.22 -9.19 16 13 C 0.13 1.88 5.00 -4.04 -0.02 1.86 16 14 C -0.12 -1.87 3.03 -88.65 -0.27 -2.14 16 15 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 16 C -0.13 -2.47 6.55 -24.45 -0.16 -2.63 16 17 C 0.15 3.64 5.89 -2.53 -0.01 3.62 16 18 N -0.60 -15.29 3.39 -170.06 -0.58 -15.87 16 19 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 23 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.14 2.84 6.52 -3.06 -0.02 2.82 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.52 6.41 -51.93 -0.33 0.19 16 31 H 0.09 1.35 4.82 -51.97 -0.25 1.10 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.00 4.38 -51.93 -0.23 0.77 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.52 6.94 -51.93 -0.36 0.16 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.85 7.43 -51.93 -0.39 0.46 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.40 4.38 8.18 -40.82 -0.33 4.05 16 42 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.11 2.89 5.87 -51.92 -0.31 2.58 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -31.14 373.74 -10.38 -41.52 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.89 Total: 3.66 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.85 Total: -1.24 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -1.33 Total: -57.95 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.14 -10.38 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028537814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.824 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds