Wall clock time and date at job start Tue Mar 31 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46977 * 2 1 4 4 N 1.46899 * 109.47467 * 120.00005 * 2 1 3 5 5 C 1.47842 * 110.99527 * 47.83519 * 4 2 1 6 6 C 1.54910 * 104.79734 * 146.36100 * 5 4 2 7 7 C 1.55136 * 101.65059 * 322.93010 * 6 5 4 8 8 C 1.47449 * 110.99984 * 168.67195 * 4 2 1 9 9 H 1.08995 * 109.88310 * 117.17893 * 8 4 2 10 10 C 1.50694 * 109.88725 * 356.15515 * 8 4 2 11 11 O 1.21284 * 120.00449 * 296.94971 * 10 8 4 12 12 N 1.34779 * 120.00265 * 116.95305 * 10 8 4 13 13 C 1.46496 * 120.00248 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47153 * 179.97438 * 13 12 10 15 15 H 1.09003 * 110.77506 * 56.78608 * 14 13 12 16 16 C 1.55402 * 110.85223 * 180.08473 * 14 13 12 17 17 C 1.54909 * 101.66453 * 153.70335 * 16 14 13 18 18 N 1.47430 * 104.83252 * 323.07291 * 17 16 14 19 19 C 1.36933 * 125.65200 * 204.16354 * 18 17 16 20 20 H 1.08001 * 120.00302 * 179.97438 * 19 18 17 21 21 C 1.38815 * 119.99929 * 359.96362 * 19 18 17 22 22 N 1.31624 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47164 * 89.99732 * 23 21 19 25 25 H 1.48497 * 109.47463 * 209.99856 * 23 21 19 26 26 H 1.48496 * 109.47244 * 329.99934 * 23 21 19 27 27 C 1.47023 * 108.70071 * 24.13261 * 18 17 16 28 28 H 1.09002 * 109.46573 * 299.99541 * 1 2 3 29 29 H 1.08996 * 109.47120 * 59.99509 * 1 2 3 30 30 H 1.08993 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47064 * 240.00584 * 2 1 3 32 32 H 1.08994 * 109.47521 * 305.67447 * 3 2 1 33 33 H 1.09003 * 109.46940 * 65.67885 * 3 2 1 34 34 H 1.09004 * 109.46851 * 185.67172 * 3 2 1 35 35 H 1.08998 * 110.37381 * 265.18997 * 5 4 2 36 36 H 1.08999 * 110.38153 * 27.53287 * 5 4 2 37 37 H 1.09005 * 110.98596 * 81.01988 * 6 5 4 38 38 H 1.09001 * 110.99220 * 204.79647 * 6 5 4 39 39 H 1.08998 * 110.70447 * 277.26370 * 7 6 5 40 40 H 1.09003 * 110.70754 * 154.03573 * 7 6 5 41 41 H 0.96997 * 119.99857 * 359.97438 * 12 10 8 42 42 H 1.08996 * 109.47174 * 60.00228 * 13 12 10 43 43 H 1.09005 * 109.47353 * 300.00179 * 13 12 10 44 44 H 1.08992 * 110.89224 * 35.63118 * 16 14 13 45 45 H 1.09005 * 111.04064 * 271.83358 * 16 14 13 46 46 H 1.09007 * 110.36782 * 204.23739 * 17 16 14 47 47 H 1.08996 * 110.37308 * 81.91591 * 17 16 14 48 48 H 0.96994 * 119.99849 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.88524 * 118.35483 * 27 18 17 50 50 H 1.09007 * 109.88132 * 239.37158 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.3228 -1.9826 1.3879 6 6 2.3870 -2.9197 2.0118 7 6 3.6732 -2.4715 1.2691 8 6 3.4685 -0.9507 1.1059 9 1 3.9921 -0.4165 1.8986 10 6 3.9828 -0.5055 -0.2387 11 8 3.5770 -1.0380 -1.2500 12 7 4.8939 0.4846 -0.3176 13 6 5.3944 0.9171 -1.6247 14 6 6.4096 2.0458 -1.4342 15 1 7.2234 1.7279 -0.7824 16 6 6.9606 2.5312 -2.8038 17 6 7.3581 3.9932 -2.4810 18 7 6.3187 4.4703 -1.5506 19 6 5.9662 5.7783 -1.3503 20 1 5.1882 6.0257 -0.6434 21 6 6.6091 6.7862 -2.0559 22 7 7.5579 6.4847 -2.9170 23 14 6.1278 8.5704 -1.7833 24 1 6.9563 9.1457 -0.6934 25 1 6.3509 9.3399 -3.0335 26 1 4.6934 8.6441 -1.4061 27 6 5.7229 3.3091 -0.8738 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.5961 1.9849 -0.8347 33 1 1.7620 1.9262 0.9365 34 1 3.1253 1.4442 -0.1016 35 1 0.4785 -1.8622 2.0666 36 1 0.9865 -2.3761 0.4286 37 1 2.4762 -2.7494 3.0847 38 1 2.1583 -3.9646 1.8020 39 1 3.7454 -2.9573 0.2960 40 1 4.5579 -2.6789 1.8710 41 1 5.2183 0.9108 0.4911 42 1 4.5630 1.2754 -2.2317 43 1 5.8746 0.0767 -2.1262 44 1 6.1851 2.4970 -3.5689 45 1 7.8304 1.9473 -3.1049 46 1 7.3593 4.5955 -3.3896 47 1 8.3375 4.0236 -2.0036 48 1 8.0073 7.1890 -3.4096 49 1 5.8936 3.3781 0.2005 50 1 4.6527 3.2703 -1.0773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028537814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:07 Heat of formation + Delta-G solvation = -16.037255 kcal Electronic energy + Delta-G solvation = -27226.491865 eV Core-core repulsion = 23674.772652 eV Total energy + Delta-G solvation = -3551.719213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09223 -39.64799 -38.64334 -36.10670 -35.42493 -34.35479 -31.90832 -30.87883 -30.14333 -29.61668 -27.86827 -27.31241 -25.43819 -23.52874 -22.48443 -22.02227 -21.70585 -21.29610 -20.38977 -18.89402 -18.04737 -17.77808 -17.40182 -16.82131 -16.49788 -16.28317 -16.01665 -15.53458 -15.08246 -14.77865 -14.67895 -14.28528 -14.26321 -13.91910 -13.55331 -13.41148 -13.32510 -13.21647 -13.09975 -13.04626 -12.82484 -12.72581 -12.68524 -12.20044 -12.06554 -12.02079 -12.00832 -11.91820 -11.77644 -11.76119 -11.65900 -11.57898 -11.35312 -11.01343 -10.74186 -10.02214 -9.21893 -8.88001 -7.77814 -5.21710 1.45851 1.46274 1.47709 1.56470 2.14360 2.49323 2.92803 3.31844 3.49028 3.62157 3.70023 3.76979 3.85011 3.96763 4.06063 4.09042 4.10750 4.19053 4.37236 4.44109 4.48892 4.54377 4.63471 4.68466 4.71916 4.76575 4.78336 4.84643 4.88266 4.90691 4.91869 5.01822 5.03491 5.06030 5.08271 5.11824 5.21555 5.30140 5.31887 5.39232 5.43169 5.48133 5.65376 5.82432 5.91225 6.01033 6.31659 6.48128 7.11231 7.15185 7.79195 8.42474 9.24120 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.003192 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.594780 B = 8769.781529 C = 9546.239728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.033 3.967 3 C -0.159 4.159 4 N -0.500 5.500 5 C 0.035 3.965 6 C -0.118 4.118 7 C -0.127 4.127 8 C 0.051 3.949 9 H 0.119 0.881 10 C 0.509 3.491 11 O -0.574 6.574 12 N -0.714 5.714 13 C 0.145 3.855 14 C -0.094 4.094 15 H 0.097 0.903 16 C -0.122 4.122 17 C 0.152 3.848 18 N -0.628 5.628 19 C -0.238 4.238 20 H 0.079 0.921 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.978 3.022 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.271 1.271 27 C 0.140 3.860 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.413 0.587 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.070 0.930 47 H -0.009 1.009 48 H 0.247 0.753 49 H 0.027 0.973 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 -19.930 10.456 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 C -0.217 4.217 4 N -0.226 5.226 5 C -0.092 4.092 6 C -0.156 4.156 7 C -0.165 4.165 8 C -0.060 4.060 9 H 0.136 0.864 10 C 0.297 3.703 11 O -0.454 6.454 12 N -0.365 5.365 13 C 0.021 3.979 14 C -0.113 4.113 15 H 0.115 0.885 16 C -0.162 4.162 17 C 0.027 3.973 18 N -0.354 5.354 19 C -0.367 4.367 20 H 0.097 0.903 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.195 1.195 27 C 0.015 3.985 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.250 0.750 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.009 0.991 48 H 0.056 0.944 49 H 0.045 0.955 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.602 -19.762 10.090 24.177 hybrid contribution 0.308 1.228 -0.676 1.435 sum -9.295 -18.534 9.414 22.771 Atomic orbital electron populations 1.21860 0.93333 1.02314 1.02263 1.22439 0.96876 0.95224 0.92920 1.22139 1.02386 0.95376 1.01772 1.64252 1.00948 1.21095 1.36327 1.23220 0.98203 0.87894 0.99919 1.22709 0.92558 0.99597 1.00766 1.22770 1.00796 0.91476 1.01506 1.22803 0.91116 0.98820 0.93294 0.86359 1.21328 0.78094 0.78702 0.92219 1.90591 1.58272 1.57350 1.39166 1.46202 1.43097 1.37017 1.10231 1.21156 0.95851 0.96009 0.84884 1.22328 0.97610 0.93093 0.98270 0.88475 1.22887 1.00834 0.96612 0.95822 1.21723 0.88970 0.91733 0.94831 1.44813 1.41836 1.01647 1.47087 1.19440 1.15677 0.82610 1.19017 0.90311 1.25619 0.98906 1.02099 0.99374 1.70053 1.28141 1.31357 1.30310 0.85074 0.78014 0.79628 0.76607 1.21246 1.22011 1.19547 1.21467 0.95305 0.86639 0.95093 0.91649 0.92461 0.91779 0.91815 0.93404 0.91692 0.91708 0.88640 0.94124 0.88939 0.89199 0.92171 0.88035 0.75022 0.93241 0.90722 0.92150 0.89242 0.91195 0.99132 0.94360 0.95466 0.96244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.83 71.98 0.64 -2.22 16 2 C 0.03 0.81 2.11 44.92 0.09 0.91 16 3 C -0.16 -4.16 8.97 71.98 0.65 -3.51 16 4 N -0.50 -10.23 5.03 -839.85 -4.22 -14.45 16 5 C 0.03 0.57 5.30 86.77 0.46 1.03 16 6 C -0.12 -1.46 7.08 31.98 0.23 -1.23 16 7 C -0.13 -1.97 6.43 31.77 0.20 -1.77 16 8 C 0.05 0.97 3.63 44.51 0.16 1.13 16 9 H 0.12 1.84 7.94 -2.39 -0.02 1.82 16 10 C 0.51 12.63 3.93 87.65 0.34 12.97 16 11 O -0.57 -18.37 13.84 -3.04 -0.04 -18.42 16 12 N -0.71 -16.59 3.67 -463.06 -1.70 -18.28 16 13 C 0.15 3.95 5.00 86.38 0.43 4.38 16 14 C -0.09 -2.89 3.03 -9.52 -0.03 -2.92 16 15 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 16 C -0.12 -4.38 6.55 32.07 0.21 -4.17 16 17 C 0.15 7.44 5.89 86.85 0.51 7.95 16 18 N -0.63 -32.13 3.39 -691.96 -2.35 -34.48 16 19 C -0.24 -13.42 10.27 84.03 0.86 -12.56 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 21 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 22 N -0.95 -56.74 10.09 21.65 0.22 -56.52 16 23 Si 0.98 45.89 29.55 68.60 2.03 47.91 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.14 5.49 6.52 86.73 0.57 6.05 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.16 6.41 -2.39 -0.02 1.14 16 31 H 0.06 1.94 4.82 -3.01 -0.01 1.92 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.76 4.38 -2.38 -0.01 1.75 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 0.76 6.94 -2.39 -0.02 0.75 16 37 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.19 7.43 -2.39 -0.02 1.18 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.41 8.00 8.18 -92.71 -0.76 7.24 16 42 H 0.05 1.57 8.06 -2.39 -0.02 1.55 16 43 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 45 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 46 H 0.07 3.94 5.87 -2.38 -0.01 3.93 16 47 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 48 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 49 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.02 0.79 7.76 -2.38 -0.02 0.77 16 Total: -1.00 -69.13 373.74 -0.12 -69.26 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.15 Total: 22.31 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.79 Total: 2.67 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -8.05 Total: -123.73 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.04 Total: -18.42 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -69.13 -0.12 -69.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028537814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.218 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds